Wall clock time and date at job start Sat Apr 11 2020 06:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47304 * 2 1 4 4 C 1.53007 * 109.46872 * 240.00188 * 2 1 3 5 5 C 1.52998 * 109.47342 * 120.00229 * 2 1 3 6 6 H 1.08997 * 109.47135 * 300.00183 * 5 2 1 7 7 C 1.53001 * 109.47355 * 179.97438 * 5 2 1 8 8 N 1.46500 * 109.47214 * 184.99817 * 7 5 2 9 9 C 1.36940 * 120.00089 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.38808 * 120.00145 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99852 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00024 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46741 * 90.00292 * 13 11 9 15 15 H 1.48496 * 109.47149 * 210.00067 * 13 11 9 16 16 H 1.48504 * 109.47222 * 330.00665 * 13 11 9 17 17 N 1.46506 * 109.47098 * 59.99908 * 5 2 1 18 18 C 1.34776 * 119.99838 * 275.00459 * 17 5 2 19 19 O 1.21551 * 120.00053 * 359.97438 * 18 17 5 20 20 C 1.47839 * 119.99918 * 180.02562 * 18 17 5 21 21 C 1.40026 * 120.56196 * 179.97438 * 20 18 17 22 22 C 1.38354 * 118.28920 * 180.27122 * 21 20 18 23 23 C 1.38358 * 119.30623 * 359.50032 * 22 21 20 24 24 C 1.50692 * 119.46060 * 180.23343 * 23 22 21 25 25 F 1.39902 * 109.47142 * 300.27174 * 24 23 22 26 26 F 1.39893 * 109.47504 * 60.27473 * 24 23 22 27 27 N 1.31929 * 121.07394 * 0.51174 * 23 22 21 28 28 C 1.31694 * 121.88054 * 359.73889 * 27 23 22 29 29 H 1.08997 * 109.47154 * 299.99599 * 1 2 3 30 30 H 1.09000 * 109.47434 * 59.99796 * 1 2 3 31 31 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47534 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47486 * 300.00184 * 3 2 1 34 34 H 1.09004 * 109.47299 * 59.99974 * 3 2 1 35 35 H 1.08991 * 109.47171 * 299.99892 * 4 2 1 36 36 H 1.08993 * 109.46938 * 60.00477 * 4 2 1 37 37 H 1.09002 * 109.47055 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47273 * 305.00217 * 7 5 2 39 39 H 1.08996 * 109.46906 * 65.00070 * 7 5 2 40 40 H 0.96998 * 120.00334 * 0.02562 * 8 7 5 41 41 H 0.97006 * 119.99952 * 180.02562 * 12 11 9 42 42 H 0.97003 * 120.00057 * 94.99664 * 17 5 2 43 43 H 1.08002 * 120.85035 * 359.97438 * 21 20 18 44 44 H 1.07999 * 120.34858 * 179.72549 * 22 21 20 45 45 H 1.09009 * 109.46813 * 180.27254 * 24 23 22 46 46 H 1.08004 * 119.71616 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7218 1.2489 8 7 4.0583 -1.5141 2.3803 9 6 5.4046 -1.6585 2.5847 10 1 6.1065 -1.1880 1.9120 11 6 5.8673 -2.4096 3.6564 12 7 7.1613 -2.5480 3.8531 13 14 4.6534 -3.2228 4.8203 14 1 4.3302 -4.5852 4.3256 15 1 5.2541 -3.3177 6.1750 16 1 3.4109 -2.4121 4.8853 17 7 1.5517 -2.1026 1.2491 18 6 0.3297 -2.3853 1.7424 19 8 -0.3670 -1.4943 2.1877 20 6 -0.1629 -3.7792 1.7429 21 6 -1.4303 -4.0862 2.2529 22 6 -1.8418 -5.4071 2.2354 23 6 -1.0003 -6.3716 1.7100 24 6 -1.4471 -7.8105 1.6844 25 9 -1.7023 -8.2429 2.9902 26 9 -2.6130 -7.9233 0.9196 27 7 0.1889 -6.0528 1.2362 28 6 0.6273 -4.8110 1.2354 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 3.9330 -1.1563 0.3175 39 1 3.9337 0.3018 1.3382 40 1 3.4280 -1.9370 2.9842 41 1 7.4847 -3.0732 4.6019 42 1 2.1078 -2.8136 0.8940 43 1 -2.0682 -3.3126 2.6541 44 1 -2.8111 -5.6819 2.6244 45 1 -0.6629 -8.4267 1.2443 46 1 1.6069 -4.5893 0.8383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284596923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:27 Heat of formation + Delta-G solvation = -110.715142 kcal Electronic energy + Delta-G solvation = -30505.454581 eV Core-core repulsion = 26065.344832 eV Total energy + Delta-G solvation = -4440.109749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.14928 -48.13659 -42.04908 -40.84146 -38.72487 -36.34897 -34.97189 -33.99392 -33.52255 -32.99830 -29.86524 -28.51188 -28.14835 -27.59955 -25.52126 -25.08746 -24.14439 -23.00544 -21.89903 -20.14340 -19.82211 -19.13602 -18.79446 -18.38675 -18.36838 -17.56934 -17.08170 -16.75138 -16.41536 -16.20209 -15.96214 -15.46160 -15.37281 -15.09859 -14.86281 -14.80024 -14.58142 -14.50771 -14.49700 -14.44020 -14.37363 -13.82679 -13.60993 -13.34363 -13.12591 -12.99759 -12.80353 -12.56128 -12.42279 -12.37012 -12.21338 -12.06441 -11.84619 -11.66329 -11.39246 -11.32203 -11.21754 -10.99338 -10.76380 -10.58507 -10.03038 -9.30402 -8.04132 -5.36654 -0.80981 -0.07232 1.32605 1.34876 1.41245 1.57146 1.95623 2.13105 2.43827 2.48755 3.07491 3.18889 3.28303 3.41239 3.49401 3.54633 3.63197 3.78116 3.82014 3.89307 4.01462 4.03129 4.08186 4.27756 4.36216 4.42194 4.59711 4.65505 4.79628 4.82963 4.85036 4.87448 4.96919 5.05665 5.09048 5.13393 5.16961 5.23922 5.30079 5.38778 5.53633 5.58234 5.77092 6.19569 6.36381 6.41902 7.03450 7.06283 7.81667 7.99014 9.17292 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.008805 B = 0.003993 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.299291 B = 7010.208915 C = 9351.014248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.155 3.845 6 H 0.070 0.930 7 C 0.145 3.855 8 N -0.757 5.757 9 C -0.227 4.227 10 H 0.066 0.934 11 C -0.053 4.053 12 N -0.979 5.979 13 Si 0.941 3.059 14 H -0.273 1.273 15 H -0.299 1.299 16 H -0.266 1.266 17 N -0.702 5.702 18 C 0.562 3.438 19 O -0.553 6.553 20 C -0.174 4.174 21 C -0.017 4.017 22 C -0.137 4.137 23 C 0.058 3.942 24 C 0.328 3.672 25 F -0.198 7.198 26 F -0.195 7.195 27 N -0.470 5.470 28 C 0.135 3.865 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.409 0.591 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.158 0.842 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.061 -4.633 -10.179 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.050 3.950 6 H 0.088 0.912 7 C 0.019 3.981 8 N -0.402 5.402 9 C -0.358 4.358 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.630 5.630 13 Si 0.769 3.231 14 H -0.199 1.199 15 H -0.226 1.226 16 H -0.192 1.192 17 N -0.353 5.353 18 C 0.349 3.651 19 O -0.432 6.432 20 C -0.179 4.179 21 C -0.044 4.044 22 C -0.157 4.157 23 C -0.081 4.081 24 C 0.273 3.727 25 F -0.179 7.179 26 F -0.176 7.176 27 N -0.179 5.179 28 C -0.024 4.024 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.195 0.805 41 H 0.066 0.934 42 H 0.246 0.754 43 H 0.182 0.818 44 H 0.189 0.811 45 H 0.175 0.825 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.821 -4.629 -10.247 23.663 hybrid contribution -0.443 -0.123 1.440 1.511 sum -21.264 -4.751 -8.807 23.501 Atomic orbital electron populations 1.21790 0.93838 1.01104 1.01180 1.20846 0.96039 0.96022 0.94187 1.21900 1.01451 0.94173 1.02385 1.21909 1.01397 1.00168 0.96292 1.21247 0.93136 0.81614 0.99017 0.91224 1.21259 0.90697 0.95594 0.90561 1.42719 1.03023 1.62267 1.32241 1.19032 0.83320 1.24812 1.08596 0.91620 1.25307 0.96821 1.01931 1.00481 1.69848 1.13503 1.46626 1.33020 0.85634 0.79213 0.79300 0.78930 1.19925 1.22582 1.19165 1.45906 1.16753 1.10775 1.61850 1.18054 0.81741 0.87703 0.77639 1.90775 1.57006 1.48002 1.47426 1.21184 0.97698 0.94600 1.04409 1.21941 0.93661 0.97217 0.91542 1.22163 1.02218 0.92394 0.98889 1.22069 0.91782 0.96971 0.97244 1.20267 0.85623 0.91383 0.75398 1.93034 1.95168 1.90453 1.39252 1.93029 1.52499 1.96707 1.75371 1.67280 1.13997 1.21297 1.15281 1.23240 0.99534 0.86418 0.93244 0.93632 0.92001 0.93918 0.92108 0.90807 0.93061 0.92643 0.91342 0.92053 0.92960 0.93647 0.80457 0.93382 0.75367 0.81823 0.81133 0.82484 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 7.00 71.98 0.50 -2.27 16 2 C -0.07 -1.54 0.62 -52.18 -0.03 -1.58 16 3 C -0.14 -2.93 8.12 71.98 0.58 -2.35 16 4 C -0.14 -2.71 7.97 71.98 0.57 -2.13 16 5 C 0.15 4.31 1.69 44.99 0.08 4.38 16 6 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 7 C 0.14 4.82 5.10 86.38 0.44 5.26 16 8 N -0.76 -32.76 5.24 -343.46 -1.80 -34.56 16 9 C -0.23 -12.23 10.47 84.03 0.88 -11.35 16 10 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 11 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 12 N -0.98 -61.19 13.97 21.65 0.30 -60.89 16 13 Si 0.94 45.08 27.73 68.60 1.90 46.98 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 16 H -0.27 -12.06 6.52 99.48 0.65 -11.41 16 17 N -0.70 -18.11 3.59 -445.41 -1.60 -19.71 16 18 C 0.56 15.05 6.13 86.78 0.53 15.58 16 19 O -0.55 -17.37 13.54 -3.88 -0.05 -17.42 16 20 C -0.17 -3.99 5.89 -19.99 -0.12 -4.11 16 21 C -0.02 -0.34 9.72 22.73 0.22 -0.12 16 22 C -0.14 -2.40 9.60 22.33 0.21 -2.18 16 23 C 0.06 1.11 6.28 42.57 0.27 1.38 16 24 C 0.33 5.10 5.53 71.23 0.39 5.50 16 25 F -0.20 -3.60 17.24 44.97 0.78 -2.82 16 26 F -0.19 -3.26 17.25 44.97 0.78 -2.49 16 27 N -0.47 -10.29 10.23 -182.82 -1.87 -12.16 16 28 C 0.13 2.92 10.71 85.02 0.91 3.84 16 29 H 0.04 1.19 7.53 -2.39 -0.02 1.17 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.03 5.77 -2.39 -0.01 1.02 16 32 H 0.06 1.31 6.54 -2.39 -0.02 1.29 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 1.04 7.60 -2.39 -0.02 1.02 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.24 6.32 -2.39 -0.02 1.23 16 38 H 0.05 1.65 6.17 -2.39 -0.01 1.64 16 39 H 0.05 1.56 6.71 -2.39 -0.02 1.54 16 40 H 0.36 15.61 5.20 -92.71 -0.48 15.13 16 41 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 42 H 0.41 9.55 6.67 -92.71 -0.62 8.94 16 43 H 0.16 2.95 7.74 -2.91 -0.02 2.93 16 44 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.16 1.74 8.10 -2.38 -0.02 1.72 16 46 H 0.18 3.34 6.42 -2.91 -0.02 3.32 16 Total: -1.00 -68.93 375.22 4.23 -64.71 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.12 Total: 31.10 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.92 Total: 7.26 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -4.97 Total: -127.31 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.55 Total: -5.31 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -68.93 4.23 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284596923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.008 kcal (2) G-P(sol) polarization free energy of solvation -68.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds