Wall clock time and date at job start Sat Apr 11 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47240 * 240.00187 * 3 2 1 5 5 H 1.48505 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47048 * 119.99943 * 3 2 1 7 7 C 1.38945 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00430 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00226 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00010 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00117 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47216 * 180.02562 * 12 10 9 14 14 C 1.48535 * 110.99651 * 59.04278 * 13 12 10 15 15 C 1.54941 * 103.22286 * 159.72013 * 14 13 12 16 16 C 1.54597 * 102.92133 * 322.58727 * 15 14 13 17 17 C 1.47905 * 110.99908 * 176.44037 * 13 12 10 18 18 H 1.08997 * 110.07782 * 333.60312 * 17 13 12 19 19 C 1.52994 * 109.91564 * 94.80292 * 17 13 12 20 20 N 1.46507 * 109.47422 * 296.62910 * 19 17 13 21 21 C 1.34771 * 119.99823 * 173.60250 * 20 19 17 22 22 O 1.21274 * 120.00467 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99498 * 180.27223 * 21 20 19 24 24 H 1.09004 * 109.52537 * 54.60103 * 23 21 20 25 25 C 1.53136 * 109.52899 * 294.40059 * 23 21 20 26 26 O 1.43074 * 109.15486 * 184.78785 * 25 23 21 27 27 C 1.43072 * 113.59273 * 57.95003 * 26 25 23 28 28 C 1.53143 * 109.15096 * 302.04591 * 27 26 25 29 29 O 1.43078 * 109.15053 * 55.31687 * 28 27 26 30 30 H 0.97000 * 119.99638 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99619 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47151 * 59.99741 * 12 10 9 33 33 H 1.09001 * 109.46763 * 300.00133 * 12 10 9 34 34 H 1.08998 * 110.66695 * 41.29157 * 14 13 12 35 35 H 1.08999 * 110.81279 * 278.22161 * 14 13 12 36 36 H 1.09001 * 110.72521 * 204.22409 * 15 14 13 37 37 H 1.09004 * 110.87240 * 81.01573 * 15 14 13 38 38 H 1.09000 * 110.30944 * 263.03784 * 16 15 14 39 39 H 1.09004 * 110.38792 * 140.91578 * 16 15 14 40 40 H 1.09000 * 109.47049 * 176.62925 * 19 17 13 41 41 H 1.09004 * 109.47571 * 56.62820 * 19 17 13 42 42 H 0.97003 * 119.99684 * 353.60103 * 20 19 17 43 43 H 1.09001 * 109.52136 * 304.69043 * 25 23 21 44 44 H 1.09001 * 109.52442 * 64.87893 * 25 23 21 45 45 H 1.09002 * 109.52192 * 182.15365 * 27 26 25 46 46 H 1.08996 * 109.58266 * 61.98302 * 27 26 25 47 47 H 1.08999 * 109.52690 * 295.41594 * 28 27 26 48 48 H 1.09007 * 109.57755 * 175.24535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 3.0855 -5.9205 1.1895 15 6 3.6167 -7.3712 1.3078 16 6 2.3891 -8.2224 0.9095 17 6 1.4953 -7.2779 0.0848 18 1 0.5329 -7.1505 0.5804 19 6 1.2868 -7.8508 -1.3185 20 7 0.4169 -6.9566 -2.0867 21 6 0.1970 -7.1910 -3.3956 22 8 0.7195 -8.1418 -3.9375 23 6 -0.6928 -6.2677 -4.1872 24 1 -0.3350 -5.2429 -4.0877 25 6 -2.1276 -6.3636 -3.6608 26 8 -2.9850 -5.5707 -4.4875 27 6 -2.9644 -5.9526 -5.8661 28 6 -1.5295 -5.8565 -6.3926 29 8 -0.6721 -6.6495 -5.5660 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6175 -4.9205 -0.8914 33 1 0.6168 -4.9208 0.8886 34 1 2.5187 -5.6447 2.0787 35 1 3.9065 -5.2224 1.0263 36 1 3.9208 -7.5883 2.3318 37 1 4.4433 -7.5397 0.6175 38 1 1.8600 -8.5629 1.7996 39 1 2.6983 -9.0749 0.3046 40 1 0.8223 -8.8340 -1.2442 41 1 2.2498 -7.9409 -1.8210 42 1 -0.0007 -6.1959 -1.6533 43 1 -2.4562 -7.4026 -3.6861 44 1 -2.1653 -5.9935 -2.6362 45 1 -3.6079 -5.2847 -6.4388 46 1 -3.3215 -6.9775 -5.9667 47 1 -1.2009 -4.8176 -6.3673 48 1 -1.4910 -6.2260 -7.4175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317493516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:41 Heat of formation + Delta-G solvation = -142.094947 kcal Electronic energy + Delta-G solvation = -31048.112326 eV Core-core repulsion = 26717.729363 eV Total energy + Delta-G solvation = -4330.382963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67259 -39.69821 -38.75171 -37.63098 -36.23811 -34.65049 -34.00353 -32.20131 -32.07774 -31.21981 -29.98620 -28.27879 -26.83093 -25.60247 -24.70205 -23.99882 -22.07747 -21.27273 -20.74279 -20.04301 -19.28617 -17.95335 -17.80297 -17.26772 -16.76791 -16.41090 -16.03019 -15.97160 -15.69025 -15.33723 -15.20180 -14.90281 -14.53126 -14.43436 -14.22765 -13.88904 -13.80401 -13.58723 -13.14470 -12.93040 -12.62305 -12.47035 -12.26557 -12.10404 -11.84903 -11.68984 -11.53165 -11.44626 -11.20923 -11.07538 -10.99964 -10.85866 -10.76956 -10.54028 -10.46031 -10.26484 -9.82946 -9.53398 -9.44566 -9.11680 -8.51029 -8.09718 -7.98988 -6.47185 -3.88174 2.46768 2.67367 3.16318 3.22990 3.27004 3.38801 3.70218 3.81651 3.91877 4.18208 4.23568 4.47605 4.60786 4.64100 4.66924 4.69169 4.83478 4.91255 4.94416 5.02111 5.14084 5.17314 5.20274 5.27115 5.28721 5.44743 5.48480 5.49903 5.57106 5.62130 5.72326 5.77403 5.84583 5.96073 6.04575 6.17943 6.27595 6.34185 6.56816 6.62124 6.65880 7.10520 7.18116 7.36391 7.50112 7.99524 8.11230 8.54785 9.12239 9.46710 9.98151 10.70224 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007359 B = 0.003909 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3803.963111 B = 7161.119615 C =10290.932873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.576 6.576 12 C 0.036 3.964 13 N -0.487 5.487 14 C 0.040 3.960 15 C -0.125 4.125 16 C -0.121 4.121 17 C 0.047 3.953 18 H 0.057 0.943 19 C 0.139 3.861 20 N -0.720 5.720 21 C 0.525 3.475 22 O -0.519 6.519 23 C 0.034 3.966 24 H 0.099 0.901 25 C 0.039 3.961 26 O -0.370 6.370 27 C 0.021 3.979 28 C 0.022 3.978 29 O -0.350 6.350 30 H 0.273 0.727 31 H 0.391 0.609 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.399 0.601 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -14.669 -3.660 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.460 6.460 12 C -0.096 4.096 13 N -0.212 5.212 14 C -0.087 4.087 15 C -0.163 4.163 16 C -0.159 4.159 17 C -0.062 4.062 18 H 0.075 0.925 19 C 0.015 3.985 20 N -0.376 5.376 21 C 0.309 3.691 22 O -0.394 6.394 23 C -0.027 4.027 24 H 0.117 0.883 25 C -0.039 4.039 26 O -0.288 6.288 27 C -0.056 4.056 28 C -0.055 4.055 29 O -0.269 6.269 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.085 0.915 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.432 -15.148 -4.550 16.723 hybrid contribution -1.064 1.362 0.847 1.925 sum -6.496 -13.785 -3.703 15.683 Atomic orbital electron populations 1.69599 1.05923 1.28359 1.50278 1.25251 0.95626 0.99712 0.97159 0.85925 0.78796 0.80452 0.79113 1.19854 1.20942 1.19903 1.19642 0.93341 0.82143 1.47865 0.87941 1.41837 1.09124 1.04561 1.64220 1.19594 0.88401 0.84421 0.84918 1.90485 1.13594 1.86720 1.55217 1.22172 0.94597 0.92160 1.00661 1.64509 1.16739 0.99154 1.40787 1.23367 0.98121 0.97037 0.90167 1.22529 0.97585 0.94959 1.01217 1.22329 0.96417 0.97985 0.99183 1.22710 0.97180 0.91656 0.94671 0.92463 1.21494 0.94892 0.91772 0.90348 1.46082 1.50305 1.31710 1.09464 1.19834 0.81727 0.85480 0.82091 1.90715 1.49438 1.29786 1.69475 1.22624 0.96112 0.99427 0.84568 0.88299 1.23128 0.88077 0.96972 0.95689 1.88159 1.64341 1.58010 1.18319 1.23317 0.97401 1.01706 0.83174 1.23365 0.89871 0.96819 0.95455 1.88215 1.65037 1.57654 1.15949 0.91755 0.77541 0.90234 0.93129 0.94473 0.87033 0.91284 0.90701 0.91229 0.90677 0.91396 0.90068 0.76362 0.91452 0.87093 0.87371 0.91913 0.91531 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 13.05 55.50 0.72 -23.03 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 9 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.44 9.86 7.51 -10.98 -0.08 9.77 16 11 O -0.58 -14.79 13.58 5.55 0.08 -14.72 16 12 C 0.04 0.59 5.04 -4.98 -0.03 0.56 16 13 N -0.49 -7.49 4.73 -224.00 -1.06 -8.55 16 14 C 0.04 0.62 5.54 -1.89 -0.01 0.61 16 15 C -0.12 -1.45 7.06 -24.87 -0.18 -1.63 16 16 C -0.12 -1.20 6.57 -25.38 -0.17 -1.37 16 17 C 0.05 0.55 2.69 -66.65 -0.18 0.37 16 18 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 19 C 0.14 1.66 5.12 -4.04 -0.02 1.64 16 20 N -0.72 -8.80 5.29 -60.29 -0.32 -9.12 16 21 C 0.52 7.50 7.18 -10.99 -0.08 7.42 16 22 O -0.52 -9.37 16.49 -14.25 -0.24 -9.60 16 23 C 0.03 0.43 3.25 -27.81 -0.09 0.34 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 C 0.04 0.41 6.30 37.23 0.23 0.64 16 26 O -0.37 -4.20 10.85 -48.80 -0.53 -4.73 16 27 C 0.02 0.18 7.05 37.23 0.26 0.45 16 28 C 0.02 0.21 7.05 37.23 0.26 0.48 16 29 O -0.35 -4.81 10.03 -62.50 -0.63 -5.43 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.39 8.99 7.90 -40.82 -0.32 8.66 16 32 H 0.08 1.14 5.40 -51.93 -0.28 0.86 16 33 H 0.05 0.74 7.99 -51.93 -0.41 0.33 16 34 H 0.04 0.57 8.01 -51.93 -0.42 0.15 16 35 H 0.11 2.11 6.26 -51.93 -0.33 1.79 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 42 H 0.40 4.35 5.54 -40.82 -0.23 4.12 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -34.02 385.29 -8.92 -42.94 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.36 Total: 12.87 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.31 Total: 11.57 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.71 Total: -54.30 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.32 Total: -34.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.02 -8.92 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317493516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.156 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds