Wall clock time and date at job start Sat Apr 11 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47240 * 240.00187 * 3 2 1 5 5 H 1.48505 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47048 * 119.99943 * 3 2 1 7 7 C 1.38945 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00430 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00226 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00010 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00117 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47216 * 180.02562 * 12 10 9 14 14 C 1.48535 * 110.99651 * 59.04278 * 13 12 10 15 15 C 1.54941 * 103.22286 * 159.72013 * 14 13 12 16 16 C 1.54597 * 102.92133 * 322.58727 * 15 14 13 17 17 C 1.47905 * 110.99908 * 176.44037 * 13 12 10 18 18 H 1.08997 * 110.07782 * 333.60312 * 17 13 12 19 19 C 1.52994 * 109.91564 * 94.80292 * 17 13 12 20 20 N 1.46507 * 109.47422 * 296.62910 * 19 17 13 21 21 C 1.34771 * 119.99823 * 173.60250 * 20 19 17 22 22 O 1.21274 * 120.00467 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99498 * 180.27223 * 21 20 19 24 24 H 1.09004 * 109.52537 * 54.60103 * 23 21 20 25 25 C 1.53136 * 109.52899 * 294.40059 * 23 21 20 26 26 O 1.43074 * 109.15486 * 184.78785 * 25 23 21 27 27 C 1.43072 * 113.59273 * 57.95003 * 26 25 23 28 28 C 1.53143 * 109.15096 * 302.04591 * 27 26 25 29 29 O 1.43078 * 109.15053 * 55.31687 * 28 27 26 30 30 H 0.97000 * 119.99638 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99619 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47151 * 59.99741 * 12 10 9 33 33 H 1.09001 * 109.46763 * 300.00133 * 12 10 9 34 34 H 1.08998 * 110.66695 * 41.29157 * 14 13 12 35 35 H 1.08999 * 110.81279 * 278.22161 * 14 13 12 36 36 H 1.09001 * 110.72521 * 204.22409 * 15 14 13 37 37 H 1.09004 * 110.87240 * 81.01573 * 15 14 13 38 38 H 1.09000 * 110.30944 * 263.03784 * 16 15 14 39 39 H 1.09004 * 110.38792 * 140.91578 * 16 15 14 40 40 H 1.09000 * 109.47049 * 176.62925 * 19 17 13 41 41 H 1.09004 * 109.47571 * 56.62820 * 19 17 13 42 42 H 0.97003 * 119.99684 * 353.60103 * 20 19 17 43 43 H 1.09001 * 109.52136 * 304.69043 * 25 23 21 44 44 H 1.09001 * 109.52442 * 64.87893 * 25 23 21 45 45 H 1.09002 * 109.52192 * 182.15365 * 27 26 25 46 46 H 1.08996 * 109.58266 * 61.98302 * 27 26 25 47 47 H 1.08999 * 109.52690 * 295.41594 * 28 27 26 48 48 H 1.09007 * 109.57755 * 175.24535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 3.0855 -5.9205 1.1895 15 6 3.6167 -7.3712 1.3078 16 6 2.3891 -8.2224 0.9095 17 6 1.4953 -7.2779 0.0848 18 1 0.5329 -7.1505 0.5804 19 6 1.2868 -7.8508 -1.3185 20 7 0.4169 -6.9566 -2.0867 21 6 0.1970 -7.1910 -3.3956 22 8 0.7195 -8.1418 -3.9375 23 6 -0.6928 -6.2677 -4.1872 24 1 -0.3350 -5.2429 -4.0877 25 6 -2.1276 -6.3636 -3.6608 26 8 -2.9850 -5.5707 -4.4875 27 6 -2.9644 -5.9526 -5.8661 28 6 -1.5295 -5.8565 -6.3926 29 8 -0.6721 -6.6495 -5.5660 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6175 -4.9205 -0.8914 33 1 0.6168 -4.9208 0.8886 34 1 2.5187 -5.6447 2.0787 35 1 3.9065 -5.2224 1.0263 36 1 3.9208 -7.5883 2.3318 37 1 4.4433 -7.5397 0.6175 38 1 1.8600 -8.5629 1.7996 39 1 2.6983 -9.0749 0.3046 40 1 0.8223 -8.8340 -1.2442 41 1 2.2498 -7.9409 -1.8210 42 1 -0.0007 -6.1959 -1.6533 43 1 -2.4562 -7.4026 -3.6861 44 1 -2.1653 -5.9935 -2.6362 45 1 -3.6079 -5.2847 -6.4388 46 1 -3.3215 -6.9775 -5.9667 47 1 -1.2009 -4.8176 -6.3673 48 1 -1.4910 -6.2260 -7.4175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317493516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:41 Heat of formation + Delta-G solvation = -169.369805 kcal Electronic energy + Delta-G solvation = -31049.295053 eV Core-core repulsion = 26717.729363 eV Total energy + Delta-G solvation = -4331.565690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65711 -40.87099 -39.95612 -39.13633 -37.12298 -36.01892 -35.67171 -33.49848 -33.09546 -32.93838 -30.95390 -29.14865 -28.32287 -26.59396 -26.07501 -25.25187 -22.96382 -22.32515 -21.81132 -21.09194 -20.93978 -19.87510 -18.78773 -18.21239 -17.68471 -17.63695 -17.28580 -16.98061 -16.67878 -16.46848 -16.42241 -16.25031 -15.91221 -15.79894 -15.57881 -15.25744 -14.97710 -14.51400 -14.34445 -14.12119 -13.94767 -13.56081 -13.46823 -13.26903 -13.11397 -12.92314 -12.77852 -12.65712 -12.42832 -12.42147 -12.23815 -12.12778 -11.94607 -11.88304 -11.64348 -11.45272 -11.42832 -10.90769 -10.34368 -10.26385 -10.11278 -9.99660 -9.32678 -8.46065 -5.93991 1.37579 1.39284 1.41955 1.51797 1.71204 2.04728 2.28233 2.62595 2.77169 2.84501 3.20432 3.28661 3.38421 3.55876 3.72531 3.79857 3.80465 3.93772 3.98417 4.10789 4.16627 4.22871 4.28690 4.33079 4.41700 4.44210 4.46997 4.49898 4.63687 4.64512 4.75659 4.77736 4.82048 4.96144 5.03372 5.14397 5.28871 5.31380 5.37977 5.42383 5.79762 5.87234 5.87807 5.97766 6.12759 6.35401 6.61543 7.05118 7.14135 7.56650 8.13022 8.70773 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007359 B = 0.003909 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3803.963111 B = 7161.119615 C =10290.932873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.987 3.013 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.438 3.562 11 O -0.614 6.614 12 C 0.048 3.952 13 N -0.510 5.510 14 C 0.038 3.962 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.052 3.948 18 H 0.082 0.918 19 C 0.139 3.861 20 N -0.710 5.710 21 C 0.523 3.477 22 O -0.563 6.563 23 C 0.034 3.966 24 H 0.097 0.903 25 C 0.044 3.956 26 O -0.386 6.386 27 C 0.019 3.981 28 C 0.016 3.984 29 O -0.381 6.381 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.406 0.594 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -15.562 -3.087 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.208 4.208 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.226 3.774 11 O -0.500 6.500 12 C -0.084 4.084 13 N -0.235 5.235 14 C -0.089 4.089 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.057 4.057 18 H 0.100 0.900 19 C 0.016 3.984 20 N -0.364 5.364 21 C 0.309 3.691 22 O -0.441 6.441 23 C -0.028 4.028 24 H 0.114 0.886 25 C -0.034 4.034 26 O -0.305 6.305 27 C -0.057 4.057 28 C -0.060 4.060 29 O -0.300 6.300 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.245 0.755 43 H 0.090 0.910 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.245 -16.037 -3.957 18.037 hybrid contribution -0.461 1.609 0.633 1.790 sum -7.705 -14.427 -3.324 16.691 Atomic orbital electron populations 1.69651 1.06641 1.29296 1.50191 1.25934 0.96485 1.02104 0.96324 0.85070 0.77850 0.77100 0.78829 1.20010 1.19475 1.19785 1.19570 0.92598 0.84029 1.49994 0.90534 1.41882 1.09269 1.04556 1.65114 1.20690 0.88324 0.85912 0.82502 1.90480 1.15714 1.87663 1.56144 1.22058 0.94272 0.89136 1.02896 1.64434 1.17409 1.00438 1.41224 1.23218 0.97013 0.98537 0.90153 1.22475 0.98109 0.92668 1.02317 1.22357 0.95187 0.97468 1.00109 1.22790 0.98298 0.89796 0.94798 0.89985 1.21550 0.93901 0.92781 0.90182 1.46048 1.49689 1.31737 1.08976 1.20179 0.81352 0.85072 0.82525 1.90688 1.51279 1.31732 1.70410 1.22661 0.97209 0.98494 0.84390 0.88574 1.23175 0.86404 0.97378 0.96418 1.88134 1.64300 1.58538 1.19502 1.23498 0.97094 1.02850 0.82293 1.23619 0.89962 0.96438 0.96030 1.88171 1.66333 1.58782 1.16669 0.91308 0.76940 0.88046 0.90496 0.94369 0.91588 0.89268 0.91699 0.88588 0.89378 0.89272 0.92530 0.75473 0.91016 0.85165 0.84978 0.91184 0.91729 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.00 13.05 21.66 0.28 -47.72 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 3 Si 0.99 42.27 29.55 68.60 2.03 44.30 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -28.00 5.29 -306.98 -1.62 -29.62 16 10 C 0.44 19.88 7.51 87.66 0.66 20.54 16 11 O -0.61 -32.81 13.58 -3.06 -0.04 -32.85 16 12 C 0.05 1.50 5.04 85.56 0.43 1.93 16 13 N -0.51 -15.11 4.73 -862.62 -4.08 -19.20 16 14 C 0.04 1.17 5.54 86.65 0.48 1.65 16 15 C -0.12 -2.55 7.06 31.80 0.22 -2.33 16 16 C -0.11 -1.87 6.57 31.47 0.21 -1.66 16 17 C 0.05 1.05 2.69 45.05 0.12 1.17 16 18 H 0.08 1.33 7.69 -2.39 -0.02 1.31 16 19 C 0.14 3.06 5.12 86.38 0.44 3.50 16 20 N -0.71 -16.23 5.29 -463.06 -2.45 -18.67 16 21 C 0.52 14.67 7.18 87.66 0.63 15.30 16 22 O -0.56 -20.41 16.49 15.93 0.26 -20.14 16 23 C 0.03 0.84 3.25 29.89 0.10 0.93 16 24 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 25 C 0.04 0.84 6.30 72.03 0.45 1.29 16 26 O -0.39 -8.09 10.85 -136.01 -1.48 -9.57 16 27 C 0.02 0.30 7.05 72.03 0.51 0.81 16 28 C 0.02 0.29 7.05 72.03 0.51 0.80 16 29 O -0.38 -10.35 10.03 -122.90 -1.23 -11.58 16 30 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.40 18.25 7.90 -92.71 -0.73 17.52 16 32 H 0.10 2.71 5.40 -2.39 -0.01 2.69 16 33 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 34 H 0.04 1.13 8.01 -2.39 -0.02 1.11 16 35 H 0.07 2.63 6.26 -2.39 -0.01 2.61 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.28 7.69 -2.39 -0.02 1.26 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 42 H 0.41 7.94 5.54 -92.71 -0.51 7.42 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.13 1.91 8.09 -2.39 -0.02 1.89 16 45 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -76.61 385.29 -2.54 -79.16 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -0.25 Total: 39.51 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 6.04 Total: 26.40 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.87 Total: -115.21 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -2.49 Total: -74.15 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -76.61 -2.54 -79.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317493516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.214 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds