Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47475 * 270.00189 * 3 2 1 5 5 H 1.48503 * 109.47019 * 30.00328 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00106 * 3 2 1 7 7 C 1.38946 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99294 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00690 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00355 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00252 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47125 * 180.02562 * 12 10 9 14 14 C 1.48670 * 111.11053 * 279.55078 * 13 12 10 15 15 C 1.54375 * 104.67454 * 201.09994 * 14 13 12 16 16 C 1.54261 * 105.06086 * 23.77698 * 15 14 13 17 17 C 1.48560 * 110.99542 * 164.13718 * 13 12 10 18 18 H 1.08996 * 110.41501 * 40.14474 * 17 13 12 19 19 C 1.52997 * 110.41156 * 277.81681 * 17 13 12 20 20 N 1.46509 * 109.47277 * 179.57343 * 19 17 13 21 21 C 1.34775 * 119.99894 * 175.01126 * 20 19 17 22 22 O 1.21277 * 120.00168 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.99859 * 179.97438 * 21 20 19 24 24 H 1.08998 * 109.52004 * 305.00158 * 23 21 20 25 25 C 1.53143 * 109.52321 * 65.13077 * 23 21 20 26 26 O 1.43074 * 109.15004 * 175.21373 * 25 23 21 27 27 C 1.43067 * 113.59294 * 302.04976 * 26 25 23 28 28 C 1.53143 * 109.15313 * 57.95196 * 27 26 25 29 29 O 1.43073 * 109.52195 * 184.86956 * 23 21 20 30 30 H 0.96998 * 120.00410 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99723 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47169 * 59.99882 * 12 10 9 33 33 H 1.09005 * 109.47092 * 300.00464 * 12 10 9 34 34 H 1.09002 * 110.44083 * 82.26089 * 14 13 12 35 35 H 1.09001 * 110.40744 * 319.92531 * 14 13 12 36 36 H 1.08997 * 110.32194 * 264.87637 * 15 14 13 37 37 H 1.09001 * 110.32233 * 142.66921 * 15 14 13 38 38 H 1.09003 * 110.32186 * 241.10481 * 16 15 14 39 39 H 1.08992 * 110.32642 * 118.89413 * 16 15 14 40 40 H 1.08997 * 109.47462 * 59.57141 * 19 17 13 41 41 H 1.09004 * 109.47264 * 299.57138 * 19 17 13 42 42 H 0.96996 * 119.99653 * 355.01492 * 20 19 17 43 43 H 1.09000 * 109.52342 * 295.11749 * 25 23 21 44 44 H 1.09002 * 109.52719 * 55.31263 * 25 23 21 45 45 H 1.09002 * 109.52370 * 177.85646 * 27 26 25 46 46 H 1.09003 * 109.52359 * 297.98205 * 27 26 25 47 47 H 1.09000 * 109.52313 * 64.58650 * 28 27 26 48 48 H 1.09005 * 109.52251 * 184.71985 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5579 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 2.7214 -6.2363 -1.3705 15 6 3.2374 -7.6906 -1.3252 16 6 2.4539 -8.3583 -0.1764 17 6 1.5304 -7.2512 0.3759 18 1 0.5443 -7.3142 -0.0842 19 6 1.4162 -7.3616 1.8976 20 7 0.7461 -8.6167 2.2473 21 6 0.6238 -8.9777 3.5400 22 8 1.0678 -8.2635 4.4138 23 6 -0.0660 -10.2685 3.8998 24 1 -1.0627 -10.2840 3.4589 25 6 0.7485 -11.4502 3.3655 26 8 0.1479 -12.6717 3.8063 27 6 0.0445 -12.7780 5.2292 28 6 -0.7701 -11.5963 5.7635 29 8 -0.1708 -10.3741 5.3227 30 1 -0.4851 0.8400 0.0004 31 1 0.3534 -2.3907 0.0002 32 1 0.6168 -4.9202 -0.8920 33 1 0.6175 -4.9213 0.8880 34 1 3.5367 -5.5506 -1.6013 35 1 1.9237 -6.1386 -2.1069 36 1 4.3065 -7.7065 -1.1138 37 1 3.0297 -8.1955 -2.2687 38 1 3.1385 -8.7020 0.5990 39 1 1.8616 -9.1909 -0.5559 40 1 0.8367 -6.5215 2.2804 41 1 2.4128 -7.3466 2.3388 42 1 0.3907 -9.1877 1.5485 43 1 0.7596 -11.4220 2.2759 44 1 1.7694 -11.3893 3.7428 45 1 -0.4544 -13.7116 5.4894 46 1 1.0417 -12.7630 5.6691 47 1 -1.7908 -11.6572 5.3861 48 1 -0.7821 -11.6252 6.8531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317493517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = -146.065146 kcal Electronic energy + Delta-G solvation = -30002.445894 eV Core-core repulsion = 25671.890769 eV Total energy + Delta-G solvation = -4330.555124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86580 -39.66346 -38.88148 -37.60602 -36.48093 -34.88960 -33.87589 -32.40081 -32.05873 -31.10493 -30.09154 -28.45481 -26.77017 -25.77820 -24.78736 -24.08385 -22.31819 -21.28120 -20.58591 -20.34272 -19.16837 -18.05057 -17.85294 -17.46499 -16.97568 -16.49953 -16.20733 -15.90950 -15.82579 -15.50654 -15.25128 -14.94416 -14.61803 -14.40824 -14.36289 -13.93533 -13.78357 -13.57586 -13.44228 -13.09307 -12.81012 -12.63629 -12.27162 -12.10808 -12.03635 -11.78751 -11.45948 -11.32855 -11.21395 -11.18004 -11.09416 -11.00716 -10.88688 -10.51240 -10.36594 -10.18621 -10.03171 -9.68099 -9.46410 -9.26912 -8.56700 -8.04167 -7.92256 -6.38399 -3.78956 2.29897 2.41036 3.14315 3.20171 3.28623 3.34858 3.46663 3.92757 3.97184 4.02444 4.24670 4.32269 4.38461 4.45648 4.50676 4.58221 4.60400 4.72189 4.87984 4.90926 5.05060 5.08433 5.16079 5.22225 5.22746 5.25450 5.27846 5.41178 5.58890 5.66699 5.73380 5.80955 5.83279 5.94640 6.00091 6.12238 6.17926 6.30705 6.32833 6.37113 6.43990 7.02358 7.14921 7.19711 7.58458 7.94881 8.09586 8.65561 9.21926 9.58148 10.10400 10.79533 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.002116 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.703727 B =13230.738366 C =14485.513590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.574 6.574 12 C 0.032 3.968 13 N -0.474 5.474 14 C 0.040 3.960 15 C -0.123 4.123 16 C -0.118 4.118 17 C 0.048 3.952 18 H 0.056 0.944 19 C 0.133 3.867 20 N -0.724 5.724 21 C 0.520 3.480 22 O -0.507 6.507 23 C 0.038 3.962 24 H 0.095 0.905 25 C 0.038 3.962 26 O -0.374 6.374 27 C 0.020 3.980 28 C 0.023 3.977 29 O -0.349 6.349 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.399 0.601 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -27.357 3.070 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.457 6.457 12 C -0.099 4.099 13 N -0.199 5.199 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.157 4.157 17 C -0.062 4.062 18 H 0.074 0.926 19 C 0.010 3.990 20 N -0.378 5.378 21 C 0.303 3.697 22 O -0.381 6.381 23 C -0.024 4.024 24 H 0.112 0.888 25 C -0.040 4.040 26 O -0.292 6.292 27 C -0.057 4.057 28 C -0.054 4.054 29 O -0.267 6.267 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.232 0.768 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.037 -26.478 4.114 26.967 hybrid contribution -1.295 0.492 -0.868 1.635 sum -4.332 -25.986 3.246 26.544 Atomic orbital electron populations 1.69612 1.05914 1.28079 1.50882 1.25254 0.95641 0.99691 0.97471 0.85860 0.79276 0.80870 0.78304 1.20487 1.20956 1.19406 1.19686 0.93338 0.82198 1.47385 0.87942 1.41857 1.09131 1.04577 1.64836 1.19658 0.88405 0.84365 0.84423 1.90520 1.13603 1.86937 1.54683 1.22117 0.94071 0.92034 1.01724 1.64910 1.30535 1.00675 1.23751 1.23154 1.00203 0.96613 0.88822 1.22287 1.00807 0.95168 0.97841 1.22357 0.98163 0.96616 0.98518 1.22830 0.97037 0.91907 0.94403 0.92567 1.21294 0.98747 0.84768 0.94180 1.45823 1.60470 1.24634 1.06882 1.19843 0.80296 0.86646 0.82910 1.90789 1.46476 1.53037 1.47748 1.22579 1.00584 0.94279 0.84925 0.88769 1.23150 0.96532 0.83350 1.00963 1.88119 1.82122 1.37334 1.21637 1.23336 1.01057 0.99618 0.81656 1.23361 0.96535 0.84158 1.01350 1.88261 1.82214 1.37815 1.18436 0.91939 0.77582 0.92872 0.89446 0.88736 0.94190 0.90848 0.91548 0.90701 0.91513 0.91045 0.89728 0.76757 0.87048 0.91177 0.87338 0.91675 0.91775 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C 0.45 10.60 7.70 -10.99 -0.08 10.52 16 11 O -0.57 -15.69 15.31 5.55 0.08 -15.60 16 12 C 0.03 0.57 5.31 -4.98 -0.03 0.54 16 13 N -0.47 -7.53 4.56 -223.47 -1.02 -8.54 16 14 C 0.04 0.57 6.09 -2.12 -0.01 0.56 16 15 C -0.12 -1.31 7.00 -25.35 -0.18 -1.49 16 16 C -0.12 -1.10 6.23 -25.35 -0.16 -1.25 16 17 C 0.05 0.54 2.32 -66.07 -0.15 0.39 16 18 H 0.06 0.56 7.99 -51.93 -0.42 0.15 16 19 C 0.13 1.63 5.22 -4.04 -0.02 1.61 16 20 N -0.72 -6.65 5.31 -60.29 -0.32 -6.97 16 21 C 0.52 6.11 7.18 -10.98 -0.08 6.04 16 22 O -0.51 -8.69 16.51 -14.26 -0.24 -8.93 16 23 C 0.04 0.34 3.25 -27.81 -0.09 0.25 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 C 0.04 0.27 6.29 37.23 0.23 0.50 16 26 O -0.37 -2.92 10.85 -48.76 -0.53 -3.45 16 27 C 0.02 0.12 7.05 37.23 0.26 0.38 16 28 C 0.02 0.15 7.05 37.23 0.26 0.42 16 29 O -0.35 -3.85 10.03 -62.49 -0.63 -4.48 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 32 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16 33 H 0.09 1.42 7.06 -51.93 -0.37 1.05 16 34 H 0.09 1.63 7.67 -51.93 -0.40 1.23 16 35 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.01 7.25 -51.93 -0.38 0.63 16 41 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 42 H 0.40 2.25 8.28 -40.82 -0.34 1.91 16 43 H 0.11 0.50 8.06 -51.93 -0.42 0.08 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -36.45 391.82 -8.95 -45.41 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.57 Total: 8.58 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.28 Total: 10.42 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.67 Total: -54.21 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.31 Total: -32.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.45 -8.95 -45.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317493517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.656 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds