Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00143 * 2 1 4 4 H 1.48493 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47253 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.46763 * 60.00198 * 3 2 1 7 7 C 1.38950 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00597 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00205 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99900 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47133 * 180.02562 * 12 10 9 14 14 C 1.46896 * 110.99676 * 179.60056 * 13 12 10 15 15 C 1.53003 * 115.55049 * 294.62045 * 14 13 12 16 16 N 1.46499 * 109.47296 * 279.62066 * 15 14 13 17 17 C 1.34777 * 119.99878 * 175.58544 * 16 15 14 18 18 O 1.21283 * 120.00101 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00006 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47358 * 180.02562 * 19 17 16 21 21 O 1.42966 * 109.47263 * 295.00172 * 20 19 17 22 22 C 1.43085 * 113.77060 * 181.19944 * 21 20 19 23 23 C 1.53265 * 108.94030 * 57.97608 * 22 21 20 24 24 C 1.53262 * 108.84204 * 305.47205 * 23 22 21 25 25 O 1.42968 * 109.47013 * 175.00111 * 20 19 17 26 26 C 1.52995 * 117.50312 * 80.29968 * 14 13 12 27 27 C 1.53008 * 117.49789 * 148.95863 * 14 13 12 28 28 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99575 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47275 * 60.00009 * 12 10 9 31 31 H 1.08998 * 109.47178 * 300.00176 * 12 10 9 32 32 H 1.00900 * 110.99503 * 303.54840 * 13 12 10 33 33 H 1.08996 * 109.46788 * 159.62192 * 15 14 13 34 34 H 1.09002 * 109.46594 * 39.62286 * 15 14 13 35 35 H 0.96998 * 120.00018 * 355.59181 * 16 15 14 36 36 H 1.09005 * 109.47193 * 300.00448 * 19 17 16 37 37 H 1.09004 * 109.47157 * 60.00361 * 19 17 16 38 38 H 1.09004 * 109.46463 * 55.00155 * 20 19 17 39 39 H 1.08994 * 109.56367 * 298.13629 * 22 21 20 40 40 H 1.08996 * 109.65104 * 177.85809 * 22 21 20 41 41 H 1.08996 * 109.57398 * 185.67199 * 23 22 21 42 42 H 1.08991 * 109.68538 * 65.34099 * 23 22 21 43 43 H 1.09003 * 109.55858 * 294.68872 * 24 23 22 44 44 H 1.09002 * 109.65056 * 174.41909 * 24 23 22 45 45 H 1.09005 * 117.50246 * 214.99966 * 26 14 13 46 46 H 1.08998 * 117.49971 * 0.02562 * 26 14 13 47 47 H 1.09002 * 117.49341 * 359.96991 * 27 14 13 48 48 H 1.08992 * 117.49898 * 144.96868 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 0.0005 14 6 1.4980 -7.2708 0.0107 15 6 0.6846 -7.5704 1.2714 16 7 1.5794 -8.0502 2.3275 17 6 1.0957 -8.2934 3.5617 18 8 -0.0806 -8.1155 3.7980 19 6 2.0160 -8.7875 4.6479 20 6 1.2209 -8.9828 5.9404 21 8 0.7392 -7.7174 6.3994 22 6 0.0021 -7.7905 7.6237 23 6 0.8936 -8.4116 8.7047 24 6 1.4198 -9.7590 8.1984 25 8 2.0668 -9.5609 6.9375 26 6 0.9531 -7.7895 -1.3215 27 6 2.1797 -8.4497 -0.6869 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6167 -4.9209 -0.8897 31 1 0.6174 -4.9205 0.8902 32 1 2.8290 -5.9164 -0.7846 33 1 -0.0595 -8.3356 1.0503 34 1 0.1834 -6.6617 1.6048 35 1 2.5200 -8.1928 2.1385 36 1 2.4572 -9.7374 4.3460 37 1 2.8069 -8.0561 4.8145 38 1 0.3768 -9.6459 5.7509 39 1 -0.8831 -8.4100 7.4804 40 1 -0.2992 -6.7889 7.9305 41 1 0.3121 -8.5650 9.6138 42 1 1.7321 -7.7478 8.9151 43 1 0.5882 -10.4531 8.0767 44 1 2.1334 -10.1664 8.9146 45 1 0.0150 -8.3442 -1.2999 46 1 1.1146 -7.1728 -2.2057 47 1 3.1475 -8.2669 -1.1538 48 1 2.0489 -9.4385 -0.2475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323423893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -138.487096 kcal Electronic energy + Delta-G solvation = -29710.993613 eV Core-core repulsion = 25380.767098 eV Total energy + Delta-G solvation = -4330.226515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43835 -39.63324 -38.67862 -37.74037 -35.87585 -34.22458 -33.94953 -33.46384 -32.60285 -31.17232 -30.60959 -27.18414 -26.51946 -26.24182 -24.06924 -23.75566 -22.56040 -21.44427 -20.38633 -19.73704 -19.22593 -17.90257 -17.87076 -17.05346 -16.86446 -16.44546 -16.14004 -15.97962 -15.39099 -15.33306 -15.01172 -14.99261 -14.72121 -14.46361 -14.06942 -13.96207 -13.55056 -13.38079 -13.26330 -13.22683 -12.93673 -12.48763 -12.26432 -12.02619 -11.81302 -11.71064 -11.64012 -11.47092 -11.37825 -11.37195 -11.10364 -10.85021 -10.34228 -10.32220 -10.27319 -10.20245 -9.92921 -9.82986 -9.51024 -9.04918 -8.43464 -8.08042 -7.95074 -6.40395 -3.81265 2.61507 2.77762 3.17481 3.27968 3.35011 3.41763 3.44087 3.75282 3.90575 4.07181 4.26592 4.40179 4.42205 4.48337 4.51947 4.63426 4.67155 4.77642 4.83244 4.99411 5.00686 5.07990 5.12340 5.20288 5.26552 5.39899 5.45860 5.47026 5.52437 5.56055 5.56739 5.72476 5.73140 5.76562 5.86381 5.95021 6.01392 6.26831 6.39832 6.56989 6.94321 7.12896 7.47359 7.56088 7.56716 8.07190 8.20259 8.61843 9.18848 9.55177 10.06101 10.77397 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.002439 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.231777 B =11479.210610 C =13637.713004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.038 3.962 15 C 0.168 3.832 16 N -0.716 5.716 17 C 0.520 3.480 18 O -0.535 6.535 19 C -0.129 4.129 20 C 0.265 3.735 21 O -0.375 6.375 22 C 0.058 3.942 23 C -0.194 4.194 24 C 0.060 3.940 25 O -0.396 6.396 26 C -0.207 4.207 27 C -0.166 4.166 28 H 0.271 0.729 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.354 0.646 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.405 0.595 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -23.087 9.870 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.056 4.056 15 C 0.044 3.956 16 N -0.368 5.368 17 C 0.306 3.694 18 O -0.411 6.411 19 C -0.169 4.169 20 C 0.169 3.831 21 O -0.295 6.295 22 C -0.019 4.019 23 C -0.232 4.232 24 C -0.017 4.017 25 O -0.317 6.317 26 C -0.247 4.247 27 C -0.204 4.204 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.240 0.760 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.645 -22.606 10.586 24.970 hybrid contribution -0.419 0.689 -0.781 1.122 sum -1.064 -21.917 9.805 24.034 Atomic orbital electron populations 1.69622 1.05944 1.28081 1.50556 1.25274 0.95640 0.99752 0.97322 0.85797 0.79701 0.81128 0.77704 1.19214 1.20772 1.20719 1.19746 0.93377 0.82186 1.47503 0.87867 1.41862 1.09248 1.04599 1.64182 1.19752 0.88339 0.84677 0.84585 1.90519 1.13717 1.87072 1.55577 1.21689 0.94446 0.90515 1.01557 1.59859 1.17514 0.98005 1.50336 1.21873 1.00385 0.91129 0.92177 1.20696 0.90739 0.99865 0.84276 1.45789 1.13319 1.67755 1.09940 1.20119 0.88658 0.77788 0.82881 1.90732 1.17175 1.51832 1.81381 1.21449 0.99279 1.04994 0.91166 1.22846 0.90111 0.83451 0.86660 1.88217 1.71417 1.30267 1.39594 1.22613 0.93087 1.02529 0.83622 1.22818 1.01823 0.98688 0.99901 1.22631 0.97919 0.95791 0.85318 1.88054 1.40457 1.81462 1.21748 1.23645 0.98378 1.04977 0.97705 1.23154 0.97474 0.96534 1.03219 0.91899 0.77421 0.93472 0.89413 0.82563 0.91148 0.90285 0.75981 0.86713 0.86884 0.91875 0.92824 0.88203 0.89745 0.89877 0.92837 0.88257 0.88424 0.88412 0.88161 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.48 5.29 -10.96 -0.06 -14.53 16 10 C 0.44 10.49 7.82 -10.98 -0.09 10.41 16 11 O -0.58 -15.87 15.79 5.55 0.09 -15.78 16 12 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 13 N -0.63 -9.70 6.29 -101.21 -0.64 -10.34 16 14 C 0.04 0.44 1.81 -131.60 -0.24 0.20 16 15 C 0.17 2.05 5.68 -4.04 -0.02 2.03 16 16 N -0.72 -8.08 5.52 -60.29 -0.33 -8.42 16 17 C 0.52 6.64 7.71 -10.99 -0.08 6.55 16 18 O -0.53 -8.82 15.42 -8.84 -0.14 -8.95 16 19 C -0.13 -1.30 5.78 -27.88 -0.16 -1.46 16 20 C 0.26 3.04 2.80 37.16 0.10 3.14 16 21 O -0.37 -5.09 9.77 -64.75 -0.63 -5.73 16 22 C 0.06 0.58 6.96 37.29 0.26 0.84 16 23 C -0.19 -1.48 6.35 -26.46 -0.17 -1.65 16 24 C 0.06 0.46 6.96 37.29 0.26 0.72 16 25 O -0.40 -4.22 10.54 -59.03 -0.62 -4.84 16 26 C -0.21 -2.05 10.07 -26.70 -0.27 -2.32 16 27 C -0.17 -1.51 9.89 -26.69 -0.26 -1.77 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.53 6.62 -51.93 -0.34 1.18 16 32 H 0.35 5.61 8.32 -39.29 -0.33 5.28 16 33 H 0.07 0.79 7.94 -51.93 -0.41 0.37 16 34 H 0.08 1.16 6.52 -51.93 -0.34 0.82 16 35 H 0.41 3.84 8.41 -40.82 -0.34 3.50 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.72 7.95 -51.93 -0.41 0.30 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.47 15.07 6.03 6.03 Total: -1.00 -35.08 400.47 -9.04 -44.12 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -7.50 Total: 16.85 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -0.94 Total: 9.46 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.30 Total: -57.43 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.30 Total: -35.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.08 -9.04 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323423893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.372 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds