Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00143 * 2 1 4 4 H 1.48493 * 109.47320 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47253 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.46763 * 60.00198 * 3 2 1 7 7 C 1.38950 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00597 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00205 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99900 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47133 * 180.02562 * 12 10 9 14 14 C 1.46896 * 110.99676 * 179.60056 * 13 12 10 15 15 C 1.53003 * 115.55049 * 294.62045 * 14 13 12 16 16 N 1.46499 * 109.47296 * 279.62066 * 15 14 13 17 17 C 1.34777 * 119.99878 * 175.58544 * 16 15 14 18 18 O 1.21283 * 120.00101 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00006 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47358 * 180.02562 * 19 17 16 21 21 O 1.42966 * 109.47263 * 295.00172 * 20 19 17 22 22 C 1.43085 * 113.77060 * 181.19944 * 21 20 19 23 23 C 1.53265 * 108.94030 * 57.97608 * 22 21 20 24 24 C 1.53262 * 108.84204 * 305.47205 * 23 22 21 25 25 O 1.42968 * 109.47013 * 175.00111 * 20 19 17 26 26 C 1.52995 * 117.50312 * 80.29968 * 14 13 12 27 27 C 1.53008 * 117.49789 * 148.95863 * 14 13 12 28 28 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99575 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47275 * 60.00009 * 12 10 9 31 31 H 1.08998 * 109.47178 * 300.00176 * 12 10 9 32 32 H 1.00900 * 110.99503 * 303.54840 * 13 12 10 33 33 H 1.08996 * 109.46788 * 159.62192 * 15 14 13 34 34 H 1.09002 * 109.46594 * 39.62286 * 15 14 13 35 35 H 0.96998 * 120.00018 * 355.59181 * 16 15 14 36 36 H 1.09005 * 109.47193 * 300.00448 * 19 17 16 37 37 H 1.09004 * 109.47157 * 60.00361 * 19 17 16 38 38 H 1.09004 * 109.46463 * 55.00155 * 20 19 17 39 39 H 1.08994 * 109.56367 * 298.13629 * 22 21 20 40 40 H 1.08996 * 109.65104 * 177.85809 * 22 21 20 41 41 H 1.08996 * 109.57398 * 185.67199 * 23 22 21 42 42 H 1.08991 * 109.68538 * 65.34099 * 23 22 21 43 43 H 1.09003 * 109.55858 * 294.68872 * 24 23 22 44 44 H 1.09002 * 109.65056 * 174.41909 * 24 23 22 45 45 H 1.09005 * 117.50246 * 214.99966 * 26 14 13 46 46 H 1.08998 * 117.49971 * 0.02562 * 26 14 13 47 47 H 1.09002 * 117.49341 * 359.96991 * 27 14 13 48 48 H 1.08992 * 117.49898 * 144.96868 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 0.0005 14 6 1.4980 -7.2708 0.0107 15 6 0.6846 -7.5704 1.2714 16 7 1.5794 -8.0502 2.3275 17 6 1.0957 -8.2934 3.5617 18 8 -0.0806 -8.1155 3.7980 19 6 2.0160 -8.7875 4.6479 20 6 1.2209 -8.9828 5.9404 21 8 0.7392 -7.7174 6.3994 22 6 0.0021 -7.7905 7.6237 23 6 0.8936 -8.4116 8.7047 24 6 1.4198 -9.7590 8.1984 25 8 2.0668 -9.5609 6.9375 26 6 0.9531 -7.7895 -1.3215 27 6 2.1797 -8.4497 -0.6869 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6167 -4.9209 -0.8897 31 1 0.6174 -4.9205 0.8902 32 1 2.8290 -5.9164 -0.7846 33 1 -0.0595 -8.3356 1.0503 34 1 0.1834 -6.6617 1.6048 35 1 2.5200 -8.1928 2.1385 36 1 2.4572 -9.7374 4.3460 37 1 2.8069 -8.0561 4.8145 38 1 0.3768 -9.6459 5.7509 39 1 -0.8831 -8.4100 7.4804 40 1 -0.2992 -6.7889 7.9305 41 1 0.3121 -8.5650 9.6138 42 1 1.7321 -7.7478 8.9151 43 1 0.5882 -10.4531 8.0767 44 1 2.1334 -10.1664 8.9146 45 1 0.0150 -8.3442 -1.2999 46 1 1.1146 -7.1728 -2.2057 47 1 3.1475 -8.2669 -1.1538 48 1 2.0489 -9.4385 -0.2475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323423893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = -166.621724 kcal Electronic energy + Delta-G solvation = -29712.213622 eV Core-core repulsion = 25380.767098 eV Total energy + Delta-G solvation = -4331.446524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31183 -40.63065 -40.10877 -39.13890 -36.69301 -36.04137 -35.18197 -34.19933 -33.92553 -33.21425 -31.41641 -28.32590 -28.00815 -26.93473 -25.89469 -24.58581 -23.35539 -22.14279 -21.36566 -21.12625 -20.67880 -19.92967 -18.74731 -18.09639 -17.78151 -17.62836 -17.09123 -16.93673 -16.86265 -16.42284 -16.29001 -15.95609 -15.80231 -15.71988 -15.57756 -15.41986 -14.67290 -14.36543 -14.30155 -14.17558 -14.03705 -13.77636 -13.61584 -13.52698 -13.01170 -12.92200 -12.85544 -12.43531 -12.42603 -12.39161 -12.12470 -12.12169 -12.08173 -11.86713 -11.53136 -11.22278 -11.02350 -10.90451 -10.67785 -10.34692 -10.04617 -10.03735 -9.27283 -8.48556 -5.97713 1.35313 1.40462 1.55115 1.63931 1.92829 2.01477 2.26570 2.58253 2.66285 2.80419 3.07761 3.18689 3.42624 3.61889 3.68462 3.77344 3.77726 3.78971 3.85495 4.01377 4.14082 4.24655 4.26296 4.39592 4.42794 4.42899 4.49599 4.51312 4.61223 4.68398 4.72933 4.77910 4.81860 4.82701 4.84692 5.01343 5.10183 5.23230 5.39124 5.44946 5.84385 5.84640 6.05050 6.15763 6.34346 6.56621 6.58183 7.09925 7.26284 7.52871 8.07328 8.69260 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.002439 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.231777 B =11479.210610 C =13637.713004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.068 3.932 13 N -0.637 5.637 14 C 0.019 3.981 15 C 0.171 3.829 16 N -0.707 5.707 17 C 0.517 3.483 18 O -0.577 6.577 19 C -0.124 4.124 20 C 0.262 3.738 21 O -0.410 6.410 22 C 0.046 3.954 23 C -0.187 4.187 24 C 0.050 3.950 25 O -0.407 6.407 26 C -0.198 4.198 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.351 0.649 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.416 0.584 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -24.669 9.962 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.064 4.064 13 N -0.268 5.268 14 C -0.073 4.073 15 C 0.047 3.953 16 N -0.359 5.359 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.163 4.163 20 C 0.167 3.833 21 O -0.331 6.331 22 C -0.030 4.030 23 C -0.224 4.224 24 C -0.026 4.026 25 O -0.328 6.328 26 C -0.239 4.239 27 C -0.179 4.179 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.377 -24.219 10.670 26.468 hybrid contribution -0.517 1.111 -0.792 1.459 sum -0.894 -23.108 9.879 25.146 Atomic orbital electron populations 1.69686 1.06923 1.29293 1.50336 1.26089 0.96563 1.02561 0.96238 0.84848 0.78057 0.76943 0.78350 1.19645 1.19398 1.19713 1.19710 0.92709 0.83932 1.49858 0.90192 1.41953 1.09327 1.04827 1.64955 1.20785 0.88242 0.86051 0.82301 1.90483 1.15616 1.87936 1.56664 1.21453 0.94180 0.88193 1.02606 1.59802 1.17599 0.98888 1.50547 1.21803 1.02240 0.90325 0.92947 1.20624 0.91134 0.98978 0.84582 1.45759 1.13765 1.66832 1.09498 1.20586 0.88416 0.77068 0.83545 1.90709 1.19117 1.53789 1.82111 1.21489 0.98362 1.06585 0.89860 1.22883 0.90281 0.82832 0.87295 1.88169 1.72052 1.31746 1.41177 1.22832 0.93645 1.03075 0.83442 1.22771 1.01329 0.98273 1.00064 1.22926 0.98986 0.96082 0.84570 1.88024 1.40820 1.81302 1.22653 1.23688 0.99623 1.04585 0.95975 1.23269 0.97301 0.96134 1.01214 0.91275 0.77105 0.91428 0.89078 0.82870 0.89780 0.93306 0.74766 0.83282 0.86860 0.92251 0.92324 0.88185 0.87031 0.90835 0.91574 0.86124 0.86897 0.88795 0.87740 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.95 13.05 21.66 0.28 -50.67 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.57 -30.34 5.29 -306.99 -1.62 -31.96 16 10 C 0.44 21.36 7.82 87.66 0.69 22.04 16 11 O -0.62 -34.61 15.79 -3.04 -0.05 -34.66 16 12 C 0.07 2.41 6.01 85.56 0.51 2.92 16 13 N -0.64 -19.37 6.29 -474.13 -2.98 -22.35 16 14 C 0.02 0.42 1.81 3.53 0.01 0.43 16 15 C 0.17 4.01 5.68 86.38 0.49 4.50 16 16 N -0.71 -15.23 5.52 -463.06 -2.55 -17.78 16 17 C 0.52 13.01 7.71 87.66 0.68 13.68 16 18 O -0.58 -19.39 15.42 10.72 0.17 -19.23 16 19 C -0.12 -2.38 5.78 29.85 0.17 -2.21 16 20 C 0.26 5.93 2.80 71.98 0.20 6.13 16 21 O -0.41 -11.39 9.77 -120.76 -1.18 -12.57 16 22 C 0.05 0.92 6.96 72.07 0.50 1.42 16 23 C -0.19 -2.63 6.35 30.77 0.20 -2.43 16 24 C 0.05 0.69 6.96 72.07 0.50 1.19 16 25 O -0.41 -8.19 10.54 -126.22 -1.33 -9.52 16 26 C -0.20 -3.43 10.07 30.62 0.31 -3.12 16 27 C -0.14 -2.15 9.89 30.62 0.30 -1.84 16 28 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.40 20.07 7.90 -92.70 -0.73 19.33 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 3.21 6.62 -2.39 -0.02 3.20 16 32 H 0.35 10.94 8.32 -89.69 -0.75 10.19 16 33 H 0.08 1.75 7.94 -2.39 -0.02 1.73 16 34 H 0.05 1.45 6.52 -2.39 -0.02 1.43 16 35 H 0.42 7.17 8.41 -92.71 -0.78 6.39 16 36 H 0.15 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.06 1.35 7.95 -2.38 -0.02 1.33 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.64 8.08 -2.38 -0.02 1.62 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -77.97 400.47 -2.66 -80.62 By element: Atomic # 1 Polarization: 49.73 SS G_CDS: -1.25 Total: 48.48 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 5.84 Total: 23.88 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.88 Total: -122.76 kcal Atomic # 8 Polarization: -73.58 SS G_CDS: -2.39 Total: -75.97 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.97 -2.66 -80.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323423893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.000 kcal (2) G-P(sol) polarization free energy of solvation -77.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds