Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47478 * 111.00590 * 74.02290 * 13 12 10 15 15 C 1.53510 * 87.93574 * 138.70226 * 14 13 12 16 16 O 1.42904 * 114.33996 * 87.63943 * 15 14 13 17 17 C 1.52995 * 114.17757 * 220.33141 * 15 14 13 18 18 N 1.46495 * 109.47346 * 278.84480 * 17 15 14 19 19 C 1.34777 * 120.00530 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99863 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00362 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.48260 * 305.02598 * 21 19 18 23 23 C 1.53099 * 109.47953 * 65.05658 * 21 19 18 24 24 C 1.53181 * 109.15930 * 177.58772 * 23 21 19 25 25 C 1.53169 * 109.04293 * 303.02170 * 24 23 21 26 26 C 1.53091 * 109.16409 * 56.97790 * 25 24 23 27 27 O 1.42901 * 109.41670 * 302.39740 * 26 25 24 28 28 C 1.47486 * 111.00363 * 169.99692 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.09001 * 113.48157 * 253.47540 * 14 13 12 34 34 H 1.09006 * 113.47263 * 23.94301 * 14 13 12 35 35 H 0.96695 * 113.99893 * 86.08022 * 16 15 14 36 36 H 1.09009 * 109.46910 * 38.84238 * 17 15 14 37 37 H 1.08993 * 109.47498 * 158.84152 * 17 15 14 38 38 H 0.97006 * 120.00137 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.52163 * 297.49841 * 23 21 19 40 40 H 1.08999 * 109.52001 * 57.69357 * 23 21 19 41 41 H 1.09007 * 109.53962 * 183.14799 * 24 23 21 42 42 H 1.09008 * 109.61376 * 62.93800 * 24 23 21 43 43 H 1.09001 * 109.52292 * 297.07628 * 25 24 23 44 44 H 1.08992 * 109.57689 * 176.91861 * 25 24 23 45 45 H 1.08998 * 109.48234 * 182.41032 * 26 25 24 46 46 H 1.09011 * 109.48626 * 62.37993 * 26 25 24 47 47 H 1.08994 * 113.47288 * 336.06232 * 28 13 12 48 48 H 1.09000 * 113.47256 * 106.46863 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.8298 -6.1287 1.3427 15 6 2.6790 -7.6479 1.1819 16 8 3.7690 -8.2798 0.5076 17 6 2.2566 -8.3745 2.4603 18 7 3.4299 -8.5874 3.3113 19 6 3.2974 -9.2129 4.4978 20 8 2.2068 -9.5999 4.8608 21 6 4.5044 -9.4324 5.3729 22 1 5.2726 -9.9595 4.8071 23 6 5.0505 -8.0798 5.8381 24 6 6.2397 -8.3132 6.7750 25 6 5.7886 -9.1917 7.9458 26 6 5.2140 -10.5012 7.3992 27 8 4.1322 -10.2114 6.5116 28 6 1.5111 -7.2612 0.2637 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.8673 -5.7956 1.3691 34 1 2.2333 -5.7170 2.1570 35 1 4.5031 -8.5224 1.0883 36 1 1.5239 -7.7709 2.9961 37 1 1.8155 -9.3372 2.2023 38 1 4.3023 -8.2782 3.0209 39 1 5.3759 -7.5015 4.9734 40 1 4.2699 -7.5351 6.3691 41 1 6.5983 -7.3562 7.1542 42 1 7.0412 -8.8134 6.2314 43 1 5.0229 -8.6693 8.5194 44 1 6.6411 -9.4086 8.5893 45 1 4.8521 -11.1125 8.2260 46 1 5.9915 -11.0425 6.8601 47 1 0.5629 -7.1517 0.7899 48 1 1.4302 -7.8875 -0.6248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325201995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = -124.233554 kcal Electronic energy + Delta-G solvation = -29959.804662 eV Core-core repulsion = 25630.196226 eV Total energy + Delta-G solvation = -4329.608435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.00028 -40.34490 -38.75709 -37.92776 -35.96134 -34.67381 -33.98872 -33.90683 -32.07515 -31.30809 -30.29589 -27.83088 -26.03871 -25.84219 -24.79263 -24.33183 -22.61983 -21.16919 -20.69472 -20.07174 -19.26715 -18.36368 -17.85685 -17.16559 -16.63213 -16.15970 -16.07994 -15.86689 -15.63575 -15.40351 -15.11358 -14.98365 -14.72616 -14.49858 -14.33548 -13.93908 -13.70531 -13.63177 -13.20282 -13.11942 -13.07564 -12.94996 -12.36857 -12.09255 -11.95973 -11.88400 -11.72340 -11.53053 -11.51792 -11.33646 -11.07069 -10.94194 -10.71097 -10.36394 -10.25032 -10.06841 -9.96297 -9.87851 -9.53862 -9.47351 -8.76092 -8.28533 -7.98858 -6.44009 -3.84891 2.26614 2.38936 3.14363 3.25081 3.32072 3.54920 3.65466 3.86629 3.97233 4.08708 4.19974 4.23975 4.29156 4.33285 4.46166 4.52768 4.54898 4.64758 4.83380 4.92895 5.05377 5.07538 5.19949 5.21004 5.24233 5.29695 5.39380 5.43491 5.44670 5.54449 5.57034 5.60791 5.65307 5.73636 5.78523 5.78655 5.94358 6.06702 6.21714 6.51681 6.62424 7.03544 7.11877 7.39078 7.53093 7.85333 8.03334 8.58762 9.15619 9.51507 10.03037 10.73820 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.002195 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.866970 B =12753.616765 C =14101.240759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.005 3.995 13 N -0.430 5.430 14 C -0.008 4.008 15 C 0.087 3.913 16 O -0.517 6.517 17 C 0.106 3.894 18 N -0.727 5.727 19 C 0.522 3.478 20 O -0.514 6.514 21 C 0.076 3.924 22 H 0.085 0.915 23 C -0.148 4.148 24 C -0.121 4.121 25 C -0.160 4.160 26 C 0.060 3.940 27 O -0.355 6.355 28 C 0.012 3.988 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.083 0.917 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -20.454 12.355 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.126 4.126 13 N -0.151 5.151 14 C -0.138 4.138 15 C 0.044 3.956 16 O -0.321 6.321 17 C -0.018 4.018 18 N -0.383 5.383 19 C 0.307 3.693 20 O -0.388 6.388 21 C 0.015 3.985 22 H 0.102 0.898 23 C -0.186 4.186 24 C -0.159 4.159 25 C -0.198 4.198 26 C -0.017 4.017 27 O -0.273 6.273 28 C -0.117 4.117 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.218 0.782 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.296 -20.405 11.509 24.853 hybrid contribution 0.183 1.162 0.987 1.536 sum 8.479 -19.243 12.496 24.461 Atomic orbital electron populations 1.69620 1.05936 1.28082 1.50635 1.25271 0.95650 0.99746 0.97345 0.85799 0.79688 0.81122 0.77730 1.19231 1.20704 1.20763 1.19740 0.93359 0.82173 1.47498 0.87895 1.41879 1.09195 1.04597 1.64454 1.19630 0.88352 0.84442 0.84639 1.90523 1.13609 1.86982 1.55110 1.22547 0.95136 0.92776 1.02190 1.68905 1.18897 0.99679 1.27660 1.24434 1.03513 0.93489 0.92322 1.22594 0.90100 0.91856 0.91024 1.86655 1.28704 1.79887 1.36903 1.21967 0.88333 1.01719 0.89746 1.45779 1.11880 1.60869 1.19733 1.20152 0.90227 0.77731 0.81198 1.90747 1.27495 1.48538 1.72035 1.21869 0.94539 0.93641 0.88496 0.89754 1.22175 0.99263 0.96052 1.01122 1.21586 0.97114 1.00823 0.96349 1.22229 1.01752 0.97233 0.98545 1.22679 0.89747 0.96090 0.93188 1.88065 1.33815 1.71389 1.34005 1.24000 0.94674 0.93610 0.99462 0.91899 0.77481 0.92586 0.88830 0.88575 0.90799 0.78238 0.89871 0.90037 0.76624 0.89941 0.90130 0.90693 0.91403 0.90733 0.90543 0.88281 0.92928 0.89876 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C 0.44 10.49 7.62 -10.99 -0.08 10.41 16 11 O -0.58 -15.67 15.34 5.55 0.09 -15.59 16 12 C 0.01 0.10 5.31 -4.98 -0.03 0.07 16 13 N -0.43 -7.12 6.06 -246.07 -1.49 -8.62 16 14 C -0.01 -0.12 6.14 -7.55 -0.05 -0.16 16 15 C 0.09 0.96 1.64 -90.09 -0.15 0.81 16 16 O -0.52 -5.82 13.56 -35.23 -0.48 -6.30 16 17 C 0.11 1.03 5.36 -4.05 -0.02 1.01 16 18 N -0.73 -6.03 5.28 -60.30 -0.32 -6.35 16 19 C 0.52 5.62 7.18 -10.99 -0.08 5.54 16 20 O -0.51 -7.94 16.51 -14.30 -0.24 -8.18 16 21 C 0.08 0.63 3.05 -27.83 -0.09 0.54 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 23 C -0.15 -1.00 5.37 -26.59 -0.14 -1.15 16 24 C -0.12 -0.65 6.03 -26.55 -0.16 -0.81 16 25 C -0.16 -0.89 6.14 -26.60 -0.16 -1.05 16 26 C 0.06 0.39 6.84 37.20 0.25 0.64 16 27 O -0.35 -3.69 9.94 -55.09 -0.55 -4.24 16 28 C 0.01 0.15 7.14 -7.54 -0.05 0.09 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 31 H 0.06 0.86 7.56 -51.93 -0.39 0.47 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.10 1.54 8.13 -51.93 -0.42 1.12 16 34 H 0.07 1.04 7.56 -51.93 -0.39 0.64 16 35 H 0.37 2.57 7.50 45.56 0.34 2.92 16 36 H 0.08 0.86 8.00 -51.92 -0.42 0.45 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 2.22 7.10 -40.82 -0.29 1.93 16 39 H 0.08 0.44 7.99 -51.93 -0.41 0.02 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 47 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 48 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -36.88 393.40 -9.28 -46.16 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.87 Total: 11.34 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.00 Total: 7.98 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -1.14 Total: -53.08 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.18 Total: -34.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.88 -9.28 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325201995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.072 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds