Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 299.99819 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99615 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47478 * 111.00590 * 74.02290 * 13 12 10 15 15 C 1.53510 * 87.93574 * 138.70226 * 14 13 12 16 16 O 1.42904 * 114.33996 * 87.63943 * 15 14 13 17 17 C 1.52995 * 114.17757 * 220.33141 * 15 14 13 18 18 N 1.46495 * 109.47346 * 278.84480 * 17 15 14 19 19 C 1.34777 * 120.00530 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99863 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00362 * 179.97438 * 19 18 17 22 22 H 1.09003 * 109.48260 * 305.02598 * 21 19 18 23 23 C 1.53099 * 109.47953 * 65.05658 * 21 19 18 24 24 C 1.53181 * 109.15930 * 177.58772 * 23 21 19 25 25 C 1.53169 * 109.04293 * 303.02170 * 24 23 21 26 26 C 1.53091 * 109.16409 * 56.97790 * 25 24 23 27 27 O 1.42901 * 109.41670 * 302.39740 * 26 25 24 28 28 C 1.47486 * 111.00363 * 169.99692 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.09001 * 113.48157 * 253.47540 * 14 13 12 34 34 H 1.09006 * 113.47263 * 23.94301 * 14 13 12 35 35 H 0.96695 * 113.99893 * 86.08022 * 16 15 14 36 36 H 1.09009 * 109.46910 * 38.84238 * 17 15 14 37 37 H 1.08993 * 109.47498 * 158.84152 * 17 15 14 38 38 H 0.97006 * 120.00137 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.52163 * 297.49841 * 23 21 19 40 40 H 1.08999 * 109.52001 * 57.69357 * 23 21 19 41 41 H 1.09007 * 109.53962 * 183.14799 * 24 23 21 42 42 H 1.09008 * 109.61376 * 62.93800 * 24 23 21 43 43 H 1.09001 * 109.52292 * 297.07628 * 25 24 23 44 44 H 1.08992 * 109.57689 * 176.91861 * 25 24 23 45 45 H 1.08998 * 109.48234 * 182.41032 * 26 25 24 46 46 H 1.09011 * 109.48626 * 62.37993 * 26 25 24 47 47 H 1.08994 * 113.47288 * 336.06232 * 28 13 12 48 48 H 1.09000 * 113.47256 * 106.46863 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.8298 -6.1287 1.3427 15 6 2.6790 -7.6479 1.1819 16 8 3.7690 -8.2798 0.5076 17 6 2.2566 -8.3745 2.4603 18 7 3.4299 -8.5874 3.3113 19 6 3.2974 -9.2129 4.4978 20 8 2.2068 -9.5999 4.8608 21 6 4.5044 -9.4324 5.3729 22 1 5.2726 -9.9595 4.8071 23 6 5.0505 -8.0798 5.8381 24 6 6.2397 -8.3132 6.7750 25 6 5.7886 -9.1917 7.9458 26 6 5.2140 -10.5012 7.3992 27 8 4.1322 -10.2114 6.5116 28 6 1.5111 -7.2612 0.2637 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.8673 -5.7956 1.3691 34 1 2.2333 -5.7170 2.1570 35 1 4.5031 -8.5224 1.0883 36 1 1.5239 -7.7709 2.9961 37 1 1.8155 -9.3372 2.2023 38 1 4.3023 -8.2782 3.0209 39 1 5.3759 -7.5015 4.9734 40 1 4.2699 -7.5351 6.3691 41 1 6.5983 -7.3562 7.1542 42 1 7.0412 -8.8134 6.2314 43 1 5.0229 -8.6693 8.5194 44 1 6.6411 -9.4086 8.5893 45 1 4.8521 -11.1125 8.2260 46 1 5.9915 -11.0425 6.8601 47 1 0.5629 -7.1517 0.7899 48 1 1.4302 -7.8875 -0.6248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325201995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = -157.015899 kcal Electronic energy + Delta-G solvation = -29961.226211 eV Core-core repulsion = 25630.196226 eV Total energy + Delta-G solvation = -4331.029984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -41.99210 -41.18706 -39.86049 -39.36560 -37.03324 -35.91840 -35.49812 -34.56573 -33.32237 -32.69370 -31.48244 -28.90764 -27.09000 -27.03915 -26.12513 -24.88515 -23.86398 -21.89232 -21.26238 -21.07174 -21.00014 -19.92501 -19.09964 -17.94957 -17.86042 -17.34443 -16.88485 -16.80867 -16.63226 -16.59817 -16.44939 -15.99863 -15.67650 -15.54281 -15.38980 -15.24948 -14.87806 -14.75708 -14.31860 -14.15528 -13.78719 -13.68958 -13.64209 -13.47335 -13.37488 -13.00028 -12.90885 -12.54477 -12.47723 -12.42276 -12.21487 -12.13249 -11.97384 -11.77216 -11.52481 -11.41197 -10.94226 -10.82855 -10.51063 -10.36900 -10.28775 -10.03444 -9.77881 -8.48519 -5.97279 1.35113 1.40504 1.45095 1.54612 1.67968 2.02465 2.27135 2.71589 2.88701 2.96410 3.17831 3.21482 3.34809 3.51425 3.62626 3.74345 3.87503 3.96696 4.01159 4.03718 4.17850 4.19433 4.26188 4.40051 4.43934 4.47742 4.54213 4.60513 4.63536 4.68330 4.76070 4.77119 4.83545 4.91720 5.00541 5.08005 5.15567 5.17485 5.33054 5.34883 5.39657 5.84855 6.03856 6.06005 6.37492 6.58005 6.68817 7.08256 7.10838 7.53739 8.09290 8.69142 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.002195 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.866970 B =12753.616765 C =14101.240759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.618 6.618 12 C 0.018 3.982 13 N -0.465 5.465 14 C -0.013 4.013 15 C 0.114 3.886 16 O -0.531 6.531 17 C 0.115 3.885 18 N -0.712 5.712 19 C 0.520 3.480 20 O -0.568 6.568 21 C 0.077 3.923 22 H 0.116 0.884 23 C -0.146 4.146 24 C -0.120 4.120 25 C -0.158 4.158 26 C 0.054 3.946 27 O -0.391 6.391 28 C 0.014 3.986 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.389 0.611 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.414 0.586 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 -21.155 12.564 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.504 6.504 12 C -0.114 4.114 13 N -0.187 5.187 14 C -0.143 4.143 15 C 0.072 3.928 16 O -0.338 6.338 17 C -0.010 4.010 18 N -0.368 5.368 19 C 0.306 3.694 20 O -0.446 6.446 21 C 0.017 3.983 22 H 0.133 0.867 23 C -0.184 4.184 24 C -0.157 4.157 25 C -0.196 4.196 26 C -0.022 4.022 27 O -0.310 6.310 28 C -0.115 4.115 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.252 0.748 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.126 0.874 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.100 -21.113 11.708 25.800 hybrid contribution -0.016 1.327 0.911 1.610 sum 9.084 -19.786 12.620 25.165 Atomic orbital electron populations 1.69678 1.06825 1.29249 1.50391 1.26053 0.96568 1.02445 0.96321 0.84870 0.78030 0.77084 0.78353 1.19770 1.19632 1.19526 1.19675 0.92629 0.83963 1.49819 0.90387 1.41955 1.09323 1.04726 1.65179 1.20699 0.88255 0.85893 0.82324 1.90489 1.15699 1.87899 1.56306 1.22437 0.94886 0.89853 1.04186 1.68881 1.19947 1.00801 1.29106 1.24461 1.02057 0.96126 0.91624 1.22252 0.89707 0.89757 0.91119 1.86623 1.29496 1.79602 1.38101 1.21814 0.88628 1.01507 0.89012 1.45647 1.12349 1.59862 1.18938 1.20709 0.90357 0.76786 0.81529 1.90719 1.29579 1.50984 1.73281 1.21986 0.93724 0.94557 0.88080 0.86695 1.22178 0.99171 0.95181 1.01871 1.21615 0.96818 1.01217 0.96064 1.22222 1.01911 0.96684 0.98783 1.22889 0.89460 0.96798 0.93083 1.88017 1.36073 1.71888 1.35064 1.24115 0.95858 0.91211 1.00306 0.91292 0.77002 0.89970 0.87175 0.90891 0.90621 0.76092 0.90314 0.89665 0.74847 0.88354 0.92494 0.90332 0.89506 0.92402 0.88601 0.87902 0.91023 0.87382 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 10 C 0.44 21.07 7.62 87.66 0.67 21.74 16 11 O -0.62 -34.35 15.34 -3.07 -0.05 -34.40 16 12 C 0.02 0.61 5.31 85.56 0.45 1.07 16 13 N -0.46 -14.93 6.06 -932.80 -5.66 -20.58 16 14 C -0.01 -0.37 6.14 83.58 0.51 0.14 16 15 C 0.11 2.34 1.64 -10.45 -0.02 2.32 16 16 O -0.53 -10.91 13.56 -148.98 -2.02 -12.93 16 17 C 0.11 2.04 5.36 86.38 0.46 2.50 16 18 N -0.71 -10.74 5.28 -463.08 -2.45 -13.19 16 19 C 0.52 10.81 7.18 87.65 0.63 11.44 16 20 O -0.57 -17.70 16.51 15.95 0.26 -17.43 16 21 C 0.08 1.17 3.05 29.88 0.09 1.26 16 22 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 23 C -0.15 -1.80 5.37 30.69 0.16 -1.63 16 24 C -0.12 -1.05 6.03 30.71 0.19 -0.86 16 25 C -0.16 -1.54 6.14 30.68 0.19 -1.35 16 26 C 0.05 0.63 6.84 72.01 0.49 1.12 16 27 O -0.39 -7.95 9.94 -129.99 -1.29 -9.24 16 28 C 0.01 0.31 7.14 83.57 0.60 0.91 16 29 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 31 H 0.08 2.37 7.56 -2.39 -0.02 2.36 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 34 H 0.08 2.07 7.56 -2.38 -0.02 2.05 16 35 H 0.39 4.50 7.50 -74.06 -0.56 3.94 16 36 H 0.08 1.53 8.00 -2.38 -0.02 1.51 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 3.74 7.10 -92.70 -0.66 3.08 16 39 H 0.10 0.85 7.99 -2.39 -0.02 0.83 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.11 1.88 7.73 -2.39 -0.02 1.86 16 48 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -82.07 393.40 -5.74 -87.81 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.94 Total: 35.29 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.71 Total: 20.33 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -9.44 Total: -114.38 kcal Atomic # 8 Polarization: -70.90 SS G_CDS: -3.10 Total: -74.00 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -82.07 -5.74 -87.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325201995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.205 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds