Wall clock time and date at job start Sat Apr 11 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.56494 * 2 1 4 4 O 1.21278 * 119.99671 * 241.22324 * 3 2 1 5 5 N 1.34772 * 119.99890 * 61.22307 * 3 2 1 6 6 C 1.46502 * 119.99996 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47120 * 180.02562 * 6 5 3 8 8 O 1.42901 * 112.94268 * 53.43493 * 7 6 5 9 9 C 1.53936 * 113.73454 * 281.72511 * 7 6 5 10 10 N 1.47964 * 86.18228 * 221.92017 * 9 7 6 11 11 C 1.46900 * 110.99658 * 137.58066 * 10 9 7 12 12 C 1.50701 * 109.47106 * 70.64429 * 11 10 9 13 13 O 1.21294 * 119.99930 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00329 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00323 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99800 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00062 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00234 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99766 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47182 * 60.00750 * 19 17 15 21 21 H 1.48507 * 109.46807 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47045 * 300.00251 * 19 17 15 23 23 C 1.47963 * 90.76137 * 24.69156 * 10 9 7 24 24 C 1.54506 * 110.51063 * 237.31967 * 2 1 3 25 25 C 1.54480 * 104.06141 * 241.35510 * 24 2 1 26 26 O 1.44422 * 104.80651 * 336.02192 * 25 24 2 27 27 C 1.44426 * 105.27439 * 40.51067 * 26 25 24 28 28 H 1.09003 * 109.47095 * 298.77500 * 1 2 3 29 29 H 1.09000 * 109.46993 * 58.77832 * 1 2 3 30 30 H 1.09003 * 109.46882 * 178.77653 * 1 2 3 31 31 H 0.97000 * 120.00321 * 0.02562 * 5 3 2 32 32 H 1.09003 * 109.46970 * 300.00193 * 6 5 3 33 33 H 1.08993 * 109.47279 * 60.00058 * 6 5 3 34 34 H 0.96699 * 113.99606 * 309.67270 * 8 7 6 35 35 H 1.08997 * 113.76197 * 336.24141 * 9 7 6 36 36 H 1.09006 * 113.75743 * 107.60469 * 9 7 6 37 37 H 1.09000 * 109.47238 * 190.64220 * 11 10 9 38 38 H 1.09001 * 109.47451 * 310.64497 * 11 10 9 39 39 H 0.97002 * 119.99609 * 359.97438 * 14 12 11 40 40 H 0.96990 * 120.00442 * 180.02562 * 18 17 15 41 41 H 1.08996 * 113.75733 * 220.98964 * 23 10 9 42 42 H 1.09002 * 113.86205 * 89.63883 * 23 10 9 43 43 H 1.09002 * 110.50767 * 122.71294 * 24 2 1 44 44 H 1.08996 * 110.63214 * 0.05359 * 24 2 1 45 45 H 1.09008 * 110.37266 * 217.18944 * 25 24 2 46 46 H 1.08998 * 110.37433 * 94.85541 * 25 24 2 47 47 H 1.09005 * 110.36921 * 78.31941 * 27 26 25 48 48 H 1.08996 * 110.37573 * 200.65527 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0594 1.4110 0.0000 4 8 2.7458 1.8011 -0.9206 5 7 1.7700 2.2392 1.0230 6 6 2.2842 3.6111 1.0228 7 6 1.8138 4.3322 2.2875 8 8 2.1333 3.6216 3.4854 9 6 0.3526 4.8121 2.2200 10 7 0.8356 6.0563 2.8586 11 6 0.2252 7.2387 2.2361 12 6 -1.2337 7.3053 2.6078 13 8 -1.7176 6.4516 3.3207 14 7 -2.0010 8.3135 2.1481 15 6 -3.3283 8.3739 2.4857 16 1 -3.7590 7.6138 3.1205 17 6 -4.1191 9.4137 2.0122 18 7 -3.5948 10.3389 1.2402 19 14 -5.9275 9.4962 2.4729 20 1 -6.0584 9.5898 3.9492 21 1 -6.5444 10.6918 1.8441 22 1 -6.6174 8.2726 1.9913 23 6 2.1976 5.8224 2.3301 24 6 2.0714 -0.7814 -1.2180 25 6 2.8757 -1.9422 -0.5920 26 8 3.2398 -1.4714 0.7239 27 6 2.0713 -0.7812 1.2179 28 1 -0.3633 0.4947 0.9008 29 1 -0.3633 0.5327 -0.8788 30 1 -0.3633 -1.0275 -0.0219 31 1 1.2213 1.9271 1.7595 32 1 3.3738 3.5907 1.0005 33 1 1.9126 4.1382 0.1441 34 1 1.8677 2.6919 3.4739 35 1 -0.0164 4.9543 1.2043 36 1 -0.3287 4.2339 2.8442 37 1 0.7314 8.1372 2.5889 38 1 0.3212 7.1692 1.1526 39 1 -1.6139 8.9965 1.5782 40 1 -4.1467 11.0649 0.9099 41 1 2.9903 6.0516 3.0422 42 1 2.3701 6.2597 1.3466 43 1 2.7220 -0.1471 -1.8202 44 1 1.2506 -1.1678 -1.8221 45 1 3.7689 -2.1468 -1.1824 46 1 2.2564 -2.8360 -0.5172 47 1 1.3285 -1.4970 1.5702 48 1 2.3464 -0.0939 2.0178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325293738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:51 Heat of formation + Delta-G solvation = -155.214850 kcal Electronic energy + Delta-G solvation = -30319.423025 eV Core-core repulsion = 25988.471139 eV Total energy + Delta-G solvation = -4330.951885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03556 -41.41958 -39.84856 -39.30710 -36.98425 -35.90686 -35.51153 -34.67656 -33.31543 -31.65288 -30.68782 -28.69745 -27.37310 -27.27796 -26.75567 -24.63730 -23.86916 -22.86161 -21.17276 -21.04183 -20.70022 -19.89483 -18.79258 -17.93917 -17.55718 -17.40759 -17.00642 -16.87021 -16.67219 -16.56929 -16.35769 -16.10720 -15.80841 -15.59925 -15.32198 -15.06161 -14.79153 -14.37385 -14.18307 -14.10260 -13.79295 -13.65998 -13.48560 -13.43882 -13.26331 -12.98550 -12.93970 -12.69375 -12.47939 -12.45349 -12.44797 -12.14422 -12.03835 -11.84734 -11.67174 -11.51014 -11.10157 -10.98328 -10.64143 -10.36010 -10.29109 -10.03402 -9.70016 -8.47908 -5.96842 1.38487 1.40580 1.47182 1.51498 1.91769 2.02853 2.27297 2.65865 2.90819 2.97030 3.18324 3.21179 3.28087 3.32271 3.50727 3.61397 3.83884 3.96378 4.01276 4.17817 4.19468 4.26973 4.29125 4.39915 4.43649 4.52615 4.54414 4.57816 4.63164 4.65166 4.72903 4.76500 4.80269 4.85285 4.94035 4.95363 5.09234 5.19456 5.24690 5.35593 5.39727 5.76080 5.83511 6.03319 6.31626 6.58253 6.65246 7.06551 7.10845 7.53939 8.09389 8.69251 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.002172 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.018087 B =12890.540797 C =13673.858787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.528 3.472 4 O -0.575 6.575 5 N -0.716 5.716 6 C 0.110 3.890 7 C 0.113 3.887 8 O -0.534 6.534 9 C -0.004 4.004 10 N -0.473 5.473 11 C 0.019 3.981 12 C 0.440 3.560 13 O -0.617 6.617 14 N -0.574 5.574 15 C -0.333 4.333 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.020 3.980 24 C -0.146 4.146 25 C 0.044 3.956 26 O -0.399 6.399 27 C 0.055 3.945 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.388 0.612 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 -21.669 -4.823 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C 0.315 3.685 4 O -0.454 6.454 5 N -0.370 5.370 6 C -0.014 4.014 7 C 0.070 3.930 8 O -0.340 6.340 9 C -0.133 4.133 10 N -0.196 5.196 11 C -0.113 4.113 12 C 0.228 3.772 13 O -0.503 6.503 14 N -0.211 5.211 15 C -0.462 4.462 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.561 5.561 19 Si 0.816 3.184 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.109 4.109 24 C -0.184 4.184 25 C -0.032 4.032 26 O -0.319 6.319 27 C -0.022 4.022 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.119 0.881 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.467 -21.082 -4.094 24.832 hybrid contribution -1.322 0.342 -0.978 1.680 sum 11.145 -20.740 -5.072 24.085 Atomic orbital electron populations 1.21868 0.89180 1.04836 1.03401 1.22217 0.99269 0.91254 0.98935 1.20729 0.78884 0.87832 0.81047 1.90671 1.39997 1.77671 1.37016 1.45760 1.54151 1.12534 1.24513 1.21886 1.00140 0.82182 0.97241 1.22710 0.93306 0.92608 0.84336 1.86616 1.83489 1.27640 1.36301 1.24499 0.97280 0.92939 0.98597 1.68459 1.03126 1.00659 1.47365 1.22409 0.92051 0.97693 0.99097 1.20697 0.89205 0.83248 0.84066 1.90486 1.75708 1.42041 1.42101 1.41944 1.09296 1.24263 1.45628 1.19607 0.85930 1.10460 1.30251 0.90323 1.26053 1.04494 0.94696 0.96109 1.69661 1.38775 1.13544 1.34141 0.84992 0.76816 0.78033 0.78524 1.19773 1.19516 1.19555 1.24250 0.93255 0.91413 1.01937 1.23077 1.01357 0.96996 0.96929 1.23596 1.00216 0.96439 0.82979 1.89133 1.36381 1.74021 1.32324 1.23724 0.88451 0.95559 0.94438 0.90508 0.92354 0.88693 0.75172 0.90146 0.90416 0.76243 0.90863 0.90449 0.87292 0.90160 0.77029 0.91283 0.87555 0.87366 0.91001 0.87810 0.88752 0.89665 0.88116 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.20 71.98 0.59 -0.64 16 2 C -0.11 -1.52 0.88 -51.91 -0.05 -1.56 16 3 C 0.53 10.47 6.49 87.66 0.57 11.04 16 4 O -0.57 -16.41 15.29 -3.02 -0.05 -16.46 16 5 N -0.72 -11.25 4.97 -463.07 -2.30 -13.55 16 6 C 0.11 2.02 5.28 86.38 0.46 2.48 16 7 C 0.11 2.36 1.52 -10.15 -0.02 2.35 16 8 O -0.53 -11.26 13.50 -148.98 -2.01 -13.27 16 9 C 0.00 -0.11 6.16 86.41 0.53 0.42 16 10 N -0.47 -15.11 5.95 -915.18 -5.44 -20.56 16 11 C 0.02 0.65 5.31 85.56 0.45 1.10 16 12 C 0.44 20.90 7.59 87.66 0.67 21.56 16 13 O -0.62 -33.94 15.13 -3.07 -0.05 -33.99 16 14 N -0.57 -29.39 5.29 -306.98 -1.62 -31.02 16 15 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 16 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 17 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 18 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 19 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 C 0.02 0.45 7.37 86.41 0.64 1.09 16 24 C -0.15 -2.05 6.31 31.61 0.20 -1.85 16 25 C 0.04 0.55 7.63 72.49 0.55 1.11 16 26 O -0.40 -7.05 11.65 -148.98 -1.74 -8.78 16 27 C 0.06 0.63 6.70 72.49 0.49 1.12 16 28 H 0.08 0.56 7.78 -2.39 -0.02 0.54 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.41 4.28 6.71 -92.71 -0.62 3.66 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 34 H 0.39 4.90 7.61 -74.06 -0.56 4.34 16 35 H 0.07 2.05 7.67 -2.39 -0.02 2.03 16 36 H 0.08 2.50 8.09 -2.38 -0.02 2.49 16 37 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 39 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 40 H 0.28 14.03 8.31 -92.72 -0.77 13.26 16 41 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.11 1.90 7.75 -2.39 -0.02 1.88 16 43 H 0.07 1.45 6.51 -2.39 -0.02 1.43 16 44 H 0.10 1.01 7.74 -2.39 -0.02 0.99 16 45 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.10 0.65 7.87 -2.38 -0.02 0.63 16 48 H 0.10 0.99 7.44 -2.39 -0.02 0.97 16 Total: -1.00 -79.37 391.58 -5.44 -84.81 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.91 Total: 37.44 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.36 Total: 19.92 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -9.08 Total: -114.39 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -3.84 Total: -72.50 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -79.37 -5.44 -84.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325293738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.403 kcal (2) G-P(sol) polarization free energy of solvation -79.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds