Wall clock time and date at job start Sat Apr 11 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.08996 * 109.46857 * 305.93367 * 3 2 1 5 5 N 1.46495 * 109.46957 * 65.93292 * 3 2 1 6 6 C 1.34777 * 120.00192 * 274.99692 * 5 3 2 7 7 O 1.21347 * 120.00028 * 0.02562 * 6 5 3 8 8 C 1.49452 * 119.99861 * 180.02562 * 6 5 3 9 9 O 1.21347 * 120.00111 * 0.02562 * 8 6 5 10 10 N 1.34777 * 119.99861 * 179.97438 * 8 6 5 11 11 C 1.46503 * 120.00179 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47166 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.46876 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00386 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99848 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00081 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99937 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47291 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47360 * 120.00301 * 17 15 13 20 20 H 1.48502 * 109.47290 * 240.00101 * 17 15 13 21 21 C 1.50697 * 109.46704 * 185.93322 * 3 2 1 22 22 O 1.21280 * 120.00023 * 263.11340 * 21 3 2 23 23 N 1.34785 * 119.99794 * 83.12057 * 21 3 2 24 24 C 1.47143 * 120.98013 * 4.73907 * 23 21 3 25 25 C 1.53721 * 108.15979 * 129.43693 * 24 23 21 26 26 O 1.42962 * 109.14870 * 52.53286 * 25 24 23 27 27 C 1.42960 * 114.16557 * 297.29219 * 26 25 24 28 28 C 1.47151 * 120.97772 * 185.02243 * 23 21 3 29 29 H 1.08998 * 109.47241 * 300.00229 * 1 2 3 30 30 H 1.09001 * 109.47380 * 59.99918 * 1 2 3 31 31 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46902 * 119.99495 * 2 1 3 33 33 H 1.08998 * 109.47241 * 239.99771 * 2 1 3 34 34 H 0.97006 * 119.99758 * 94.99943 * 5 3 2 35 35 H 0.96999 * 120.00161 * 0.02562 * 10 8 6 36 36 H 1.09004 * 109.46833 * 300.00367 * 11 10 8 37 37 H 1.09003 * 109.46704 * 59.99975 * 11 10 8 38 38 H 1.09002 * 109.46729 * 300.00245 * 12 11 10 39 39 H 1.08997 * 109.47137 * 60.00111 * 12 11 10 40 40 H 0.96999 * 120.00414 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.68372 * 249.20782 * 24 23 21 42 42 H 1.08997 * 109.68773 * 9.76437 * 24 23 21 43 43 H 1.08999 * 109.65382 * 292.56615 * 25 24 23 44 44 H 1.09003 * 109.48166 * 172.39793 * 25 24 23 45 45 H 1.09001 * 109.51172 * 302.65538 * 27 26 25 46 46 H 1.08999 * 109.54865 * 182.53457 * 27 26 25 47 47 H 1.08998 * 109.68691 * 350.23273 * 28 23 21 48 48 H 1.09000 * 109.68091 * 110.75445 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5925 1.9861 -0.8321 5 7 1.6717 2.0907 1.2611 6 6 0.4563 2.6569 1.3980 7 8 -0.3331 2.6295 0.4768 8 6 0.0809 3.3186 2.6844 9 8 0.8704 3.3464 3.6055 10 7 -1.1343 3.8853 2.8212 11 6 -1.5022 4.5344 4.0820 12 6 -2.9231 5.0912 3.9733 13 6 -3.3013 5.7594 5.2700 14 1 -2.5986 5.7841 6.0898 15 6 -4.5444 6.3392 5.4099 16 7 -5.4002 6.3087 4.4119 17 14 -5.0134 7.1669 7.0174 18 1 -3.8829 7.0651 7.9749 19 1 -5.3212 8.5977 6.7662 20 1 -6.2087 6.4964 7.5891 21 6 3.5398 1.4450 -0.1469 22 8 4.2451 1.5359 0.8355 23 7 4.0972 1.3463 -1.3700 24 6 3.2649 1.3392 -2.5834 25 6 3.8303 2.3845 -3.5584 26 8 5.2270 2.1440 -3.7457 27 6 6.0091 2.2812 -2.5569 28 6 5.5558 1.2363 -1.5310 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 2.3026 2.1123 1.9976 35 1 -1.7653 3.8634 2.0848 36 1 -1.4586 3.8061 4.8918 37 1 -0.8072 5.3486 4.2877 38 1 -2.9670 5.8193 3.1634 39 1 -3.6177 4.2767 3.7678 40 1 -6.2749 6.7163 4.5103 41 1 3.2941 0.3511 -3.0428 42 1 2.2372 1.5943 -2.3252 43 1 3.6847 3.3842 -3.1491 44 1 3.3154 2.3046 -4.5158 45 1 5.8714 3.2805 -2.1439 46 1 7.0619 2.1268 -2.7931 47 1 6.0458 1.4233 -0.5755 48 1 5.8117 0.2378 -1.8856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329375257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:58 Heat of formation + Delta-G solvation = -174.802931 kcal Electronic energy + Delta-G solvation = -30064.729557 eV Core-core repulsion = 25732.928269 eV Total energy + Delta-G solvation = -4331.801288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23686 -41.35420 -39.92140 -39.29707 -37.06406 -36.51425 -35.98344 -34.85604 -33.48707 -32.48387 -31.70243 -29.75819 -28.30696 -27.24016 -25.36151 -24.91747 -23.69208 -22.94248 -22.30490 -21.53874 -20.71534 -19.71976 -18.66871 -18.41490 -17.86749 -17.62059 -17.40355 -17.04650 -16.79386 -16.53137 -16.50270 -16.19191 -16.07372 -15.89051 -15.67080 -15.09446 -15.08307 -14.89168 -14.40903 -14.32442 -14.16326 -13.77915 -13.43322 -13.25947 -13.10898 -12.97091 -12.93840 -12.81777 -12.57166 -12.49860 -12.38936 -12.30300 -11.94597 -11.81836 -11.69447 -11.42186 -11.30662 -11.01805 -10.75072 -10.62602 -10.41507 -10.22504 -9.74998 -8.24113 -6.34831 0.25961 1.02217 1.29084 1.41781 1.43042 1.55896 1.70642 2.06974 2.38997 2.61008 2.82513 3.07299 3.10889 3.36811 3.67665 3.71571 3.73367 3.92017 4.06920 4.13484 4.20403 4.25415 4.38150 4.41936 4.43955 4.45091 4.62409 4.72269 4.74255 4.79886 4.80444 4.86753 4.89443 5.01956 5.06044 5.10375 5.22461 5.39790 5.42176 5.54840 5.74287 5.83666 6.02704 6.06933 6.12794 6.27656 6.61965 6.78174 6.79117 6.88788 7.34564 8.88009 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.001901 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.473272 B =14722.583903 C =14791.354977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.125 3.875 4 H 0.129 0.871 5 N -0.684 5.684 6 C 0.524 3.476 7 O -0.517 6.517 8 C 0.498 3.502 9 O -0.551 6.551 10 N -0.684 5.684 11 C 0.137 3.863 12 C 0.020 3.980 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.517 3.483 22 O -0.565 6.565 23 N -0.607 5.607 24 C 0.062 3.938 25 C 0.042 3.958 26 O -0.392 6.392 27 C 0.050 3.950 28 C 0.075 3.925 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.418 0.582 35 H 0.416 0.584 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.133 0.867 45 H 0.048 0.952 46 H 0.128 0.872 47 H 0.090 0.910 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.507 -14.169 -20.198 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.018 3.982 4 H 0.146 0.854 5 N -0.339 5.339 6 C 0.304 3.696 7 O -0.393 6.393 8 C 0.278 3.722 9 O -0.430 6.430 10 N -0.336 5.336 11 C 0.014 3.986 12 C -0.018 4.018 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.194 4.194 16 N -0.566 5.566 17 Si 0.791 3.209 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.203 1.203 21 C 0.305 3.695 22 O -0.444 6.444 23 N -0.341 5.341 24 C -0.060 4.060 25 C -0.035 4.035 26 O -0.310 6.310 27 C -0.027 4.027 28 C -0.048 4.048 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.257 0.743 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.151 0.849 45 H 0.067 0.933 46 H 0.146 0.854 47 H 0.109 0.891 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.791 -14.107 -19.921 32.064 hybrid contribution -0.620 0.714 1.250 1.567 sum 20.170 -13.393 -18.671 30.575 Atomic orbital electron populations 1.21792 0.93997 1.02070 1.02287 1.21879 0.97358 0.92158 1.04502 1.21249 0.91312 0.97465 0.88169 0.85409 1.45537 1.15675 1.55444 1.17215 1.19743 0.82822 0.79290 0.87724 1.90759 1.49959 1.57940 1.40603 1.20328 0.82970 0.80375 0.88485 1.90745 1.50705 1.59462 1.42097 1.46017 1.15205 1.54222 1.18132 1.21490 0.97509 0.95835 0.83748 1.19169 0.90147 0.95473 0.96986 1.21473 1.00398 1.36534 0.99854 0.91878 1.25898 0.96374 0.96709 1.00394 1.70070 1.07707 1.45629 1.33208 0.85367 0.78326 0.78022 0.79144 1.18781 1.20353 1.20334 1.20631 0.90212 0.75585 0.83119 1.90727 1.64119 1.50890 1.38631 1.48160 1.08275 1.71973 1.05708 1.22970 0.95842 1.02612 0.84543 1.23246 0.81781 0.97063 1.01395 1.87972 1.19072 1.91358 1.32610 1.23047 0.97270 0.97310 0.85092 1.22448 0.79485 1.01468 1.01351 0.94867 0.91373 0.91294 0.91392 0.87446 0.74349 0.74674 0.92133 0.92195 0.97245 0.97194 0.92547 0.87653 0.87165 0.93006 0.84931 0.93328 0.85439 0.89142 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.53 71.98 0.61 -1.85 16 2 C -0.12 -1.72 5.59 30.60 0.17 -1.55 16 3 C 0.13 2.20 1.90 44.25 0.08 2.29 16 4 H 0.13 1.92 5.57 -2.39 -0.01 1.91 16 5 N -0.68 -16.48 5.00 -447.44 -2.24 -18.72 16 6 C 0.52 14.78 6.50 87.27 0.57 15.35 16 7 O -0.52 -14.71 13.62 -3.24 -0.04 -14.75 16 8 C 0.50 17.12 7.89 87.27 0.69 17.81 16 9 O -0.55 -21.61 16.48 -3.24 -0.05 -21.66 16 10 N -0.68 -24.64 5.55 -464.40 -2.58 -27.21 16 11 C 0.14 5.76 5.61 86.38 0.48 6.25 16 12 C 0.02 0.99 5.09 29.85 0.15 1.14 16 13 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.01 0.28 5.46 84.66 0.46 0.74 16 16 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 17 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.52 9.73 6.93 87.65 0.61 10.34 16 22 O -0.57 -14.95 15.44 -3.03 -0.05 -14.99 16 23 N -0.61 -7.86 3.01 -816.54 -2.46 -10.32 16 24 C 0.06 0.43 6.37 86.50 0.55 0.98 16 25 C 0.04 0.33 7.00 72.22 0.51 0.83 16 26 O -0.39 -4.60 10.74 -148.98 -1.60 -6.20 16 27 C 0.05 0.50 6.98 72.08 0.50 1.00 16 28 C 0.07 0.85 6.65 86.35 0.57 1.43 16 29 H 0.03 0.76 5.62 -2.39 -0.01 0.75 16 30 H 0.07 1.12 7.90 -2.39 -0.02 1.10 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 0.92 7.97 -2.39 -0.02 0.90 16 34 H 0.42 11.12 7.23 -92.70 -0.67 10.45 16 35 H 0.42 14.02 7.94 -92.71 -0.74 13.29 16 36 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 42 H 0.11 0.56 5.50 -2.39 -0.01 0.55 16 43 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.09 1.32 7.06 -2.39 -0.02 1.30 16 48 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -71.35 392.15 -0.92 -72.27 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.41 Total: 25.25 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 6.20 Total: 24.95 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -6.99 Total: -110.31 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -1.74 Total: -57.61 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.35 -0.92 -72.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329375257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.535 kcal (2) G-P(sol) polarization free energy of solvation -71.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds