Wall clock time and date at job start Sat Apr 11 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.46956 * 269.99721 * 3 2 1 5 5 H 1.48497 * 109.47183 * 29.99962 * 3 2 1 6 6 H 1.48505 * 109.47271 * 149.99618 * 3 2 1 7 7 C 1.38948 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99881 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00014 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47315 * 179.97438 * 12 10 9 14 14 C 1.47951 * 110.99865 * 189.99652 * 13 12 10 15 15 C 1.53936 * 86.18148 * 222.41637 * 14 13 12 16 16 C 1.52999 * 113.73872 * 138.08088 * 15 14 13 17 17 C 1.53000 * 109.47289 * 187.63100 * 16 15 14 18 18 O 1.42903 * 109.46905 * 184.89342 * 17 16 15 19 19 N 1.46500 * 113.73165 * 269.25959 * 15 14 13 20 20 C 1.34777 * 120.00201 * 293.87834 * 19 15 14 21 21 O 1.21286 * 119.99996 * 355.02414 * 20 19 15 22 22 C 1.50704 * 120.00214 * 175.02778 * 20 19 15 23 23 H 1.09003 * 110.74984 * 62.01583 * 22 20 19 24 24 C 1.55307 * 110.84430 * 185.71291 * 22 20 19 25 25 C 1.54948 * 100.93783 * 152.32063 * 24 22 20 26 26 O 1.43643 * 105.13753 * 323.55277 * 25 24 22 27 27 C 1.43243 * 109.97117 * 24.43195 * 26 25 24 28 28 C 1.48191 * 111.07090 * 90.55871 * 13 12 10 29 29 H 0.96992 * 120.00153 * 0.02562 * 1 2 3 30 30 H 0.96992 * 119.99926 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47059 * 59.99495 * 12 10 9 32 32 H 1.09000 * 109.46857 * 299.99480 * 12 10 9 33 33 H 1.09006 * 113.75839 * 108.10126 * 14 13 12 34 34 H 1.09002 * 113.86629 * 336.74245 * 14 13 12 35 35 H 1.09002 * 109.46687 * 307.63403 * 16 15 14 36 36 H 1.08998 * 109.47225 * 67.62852 * 16 15 14 37 37 H 1.08997 * 109.46736 * 304.89405 * 17 16 15 38 38 H 1.08999 * 109.46927 * 64.89610 * 17 16 15 39 39 H 0.96701 * 113.99786 * 179.97438 * 18 17 16 40 40 H 0.97007 * 120.00003 * 113.87696 * 19 15 14 41 41 H 1.09002 * 111.12225 * 270.23660 * 24 22 20 42 42 H 1.08998 * 111.12674 * 34.40455 * 24 22 20 43 43 H 1.09002 * 110.31128 * 204.63618 * 25 24 22 44 44 H 1.09005 * 110.39332 * 82.51713 * 25 24 22 45 45 H 1.08999 * 109.82208 * 238.77464 * 27 26 25 46 46 H 1.08997 * 109.90766 * 117.84430 * 27 26 25 47 47 H 1.09000 * 113.75704 * 23.24128 * 28 13 12 48 48 H 1.08998 * 113.82864 * 251.81250 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0005 14 6 1.5091 -7.2664 -0.2409 15 6 2.4123 -7.8392 0.8663 16 6 1.6845 -8.7777 1.8308 17 6 2.6141 -9.1371 2.9917 18 8 1.9764 -10.1016 3.8314 19 7 3.6728 -8.3964 0.3695 20 6 3.6625 -9.4932 -0.4137 21 8 2.6194 -10.0716 -0.6336 22 6 4.9471 -10.0009 -1.0164 23 1 5.6507 -10.2927 -0.2366 24 6 4.6730 -11.1801 -1.9892 25 6 5.8705 -11.0424 -2.9629 26 8 6.0805 -9.6282 -3.1015 27 6 5.5711 -8.9428 -1.9515 28 6 2.5345 -6.3939 1.3820 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6175 -4.9205 -0.8902 32 1 0.6170 -4.9209 0.8897 33 1 1.7008 -7.6898 -1.2269 34 1 0.4504 -7.2547 0.0183 35 1 0.7945 -8.2818 2.2180 36 1 1.3937 -9.6863 1.3035 37 1 3.5415 -9.5538 2.5988 38 1 2.8352 -8.2406 3.5709 39 1 2.5098 -10.3766 4.5897 40 1 4.5149 -7.9760 0.6043 41 1 4.7003 -12.1357 -1.4656 42 1 3.7253 -11.0468 -2.5108 43 1 5.6259 -11.4850 -3.9284 44 1 6.7575 -11.5173 -2.5436 45 1 4.8105 -8.2241 -2.2563 46 1 6.3821 -8.4271 -1.4373 47 1 1.7765 -6.1245 2.1176 48 1 3.5438 -6.1214 1.6904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329642862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:10 Heat of formation + Delta-G solvation = -126.229017 kcal Electronic energy + Delta-G solvation = -30626.196355 eV Core-core repulsion = 26296.501390 eV Total energy + Delta-G solvation = -4329.694965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23440 -39.93421 -38.43770 -37.72110 -37.02091 -34.36039 -33.81850 -32.74408 -31.53578 -31.20764 -29.57626 -28.97709 -26.33587 -25.49442 -24.11611 -23.63962 -22.65433 -21.75703 -20.50997 -19.47775 -19.17035 -17.93268 -17.82843 -17.62621 -16.96076 -16.27185 -16.09049 -15.80588 -15.45921 -15.27232 -15.09198 -14.83908 -14.53587 -14.50044 -14.15832 -13.82435 -13.68010 -13.56129 -13.23452 -13.09004 -12.58948 -12.47262 -12.28080 -11.95394 -11.83573 -11.79026 -11.60690 -11.55605 -11.33275 -11.27756 -11.17843 -10.94173 -10.71092 -10.40294 -10.25147 -10.21830 -9.96095 -9.71145 -9.50471 -9.26010 -8.77029 -8.19401 -7.96560 -6.41997 -3.82870 2.36322 2.80656 3.17275 3.25818 3.31201 3.56244 3.75072 3.87271 3.92242 3.96729 4.17773 4.20006 4.44105 4.57000 4.73070 4.76943 4.81046 4.90303 4.94858 4.96053 5.02404 5.17584 5.22884 5.33159 5.37212 5.39459 5.44514 5.46808 5.50674 5.58744 5.59181 5.68129 5.73174 5.77979 5.82342 5.82749 6.01499 6.24740 6.40803 6.49252 6.64739 7.06830 7.28310 7.36419 7.54611 7.99781 8.05544 8.61586 9.17990 9.54387 10.06398 10.75899 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.002620 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.341119 B =10684.151342 C =12316.505855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.577 6.577 12 C 0.008 3.992 13 N -0.443 5.443 14 C 0.005 3.995 15 C 0.151 3.849 16 C -0.121 4.121 17 C 0.081 3.919 18 O -0.575 6.575 19 N -0.698 5.698 20 C 0.530 3.470 21 O -0.529 6.529 22 C -0.147 4.147 23 H 0.110 0.890 24 C -0.134 4.134 25 C 0.049 3.951 26 O -0.379 6.379 27 C 0.063 3.937 28 C 0.013 3.987 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.377 0.623 40 H 0.406 0.594 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -22.557 3.320 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.460 6.460 12 C -0.124 4.124 13 N -0.166 5.166 14 C -0.125 4.125 15 C 0.064 3.936 16 C -0.160 4.160 17 C 0.003 3.997 18 O -0.380 6.380 19 N -0.350 5.350 20 C 0.315 3.685 21 O -0.404 6.404 22 C -0.169 4.169 23 H 0.128 0.872 24 C -0.172 4.172 25 C -0.027 4.027 26 O -0.299 6.299 27 C -0.014 4.014 28 C -0.116 4.116 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.224 0.776 40 H 0.241 0.759 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.676 -22.362 2.072 23.429 hybrid contribution -0.198 0.915 1.275 1.582 sum 6.478 -21.447 3.347 22.653 Atomic orbital electron populations 1.69607 1.05935 1.28138 1.50742 1.25254 0.95628 0.99698 0.97398 0.85866 0.79200 0.80856 0.78415 1.20395 1.20949 1.19446 1.19683 0.93315 0.82221 1.47542 0.87979 1.41880 1.09156 1.04610 1.64726 1.19654 0.88371 0.84354 0.84437 1.90512 1.13624 1.86990 1.54875 1.22499 0.94757 0.92989 1.02122 1.68454 1.30471 1.00390 1.17236 1.24308 0.97139 0.90839 1.00165 1.21680 0.85339 0.92257 0.94361 1.21792 0.98284 1.01217 0.94692 1.22075 0.95120 0.90981 0.91477 1.86486 1.47409 1.62239 1.41840 1.45596 1.08889 1.29074 1.51393 1.20127 0.90349 0.79920 0.78075 1.90704 1.32926 1.57054 1.59762 1.22938 0.96370 0.97881 0.99698 0.87189 1.23155 1.00205 0.97609 0.96235 1.23433 0.96692 0.82489 1.00088 1.88447 1.82093 1.18338 1.40991 1.23101 0.98552 0.93919 0.85858 1.24380 1.03845 0.90774 0.92648 0.91887 0.77553 0.89295 0.92274 0.88843 0.90382 0.90230 0.89127 0.93892 0.93549 0.77602 0.75860 0.89441 0.88834 0.89383 0.92013 0.90158 0.90352 0.89890 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C 0.45 10.43 7.83 -10.99 -0.09 10.35 16 11 O -0.58 -15.45 16.01 5.54 0.09 -15.36 16 12 C 0.01 0.14 5.28 -4.97 -0.03 0.12 16 13 N -0.44 -6.95 5.65 -239.36 -1.35 -8.30 16 14 C 0.01 0.07 6.89 -2.76 -0.02 0.05 16 15 C 0.15 1.69 0.61 -133.52 -0.08 1.61 16 16 C -0.12 -1.31 4.86 -26.73 -0.13 -1.44 16 17 C 0.08 0.76 6.86 37.16 0.26 1.01 16 18 O -0.57 -5.70 13.66 -35.23 -0.48 -6.18 16 19 N -0.70 -6.91 4.42 -48.69 -0.22 -7.12 16 20 C 0.53 5.66 6.53 -10.98 -0.07 5.58 16 21 O -0.53 -7.29 13.83 5.55 0.08 -7.22 16 22 C -0.15 -1.22 3.39 -89.82 -0.30 -1.52 16 23 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.13 -1.10 6.23 -24.48 -0.15 -1.25 16 25 C 0.05 0.39 7.78 38.19 0.30 0.69 16 26 O -0.38 -4.22 11.36 -35.23 -0.40 -4.62 16 27 C 0.06 0.60 7.35 37.88 0.28 0.88 16 28 C 0.01 0.16 7.13 -2.63 -0.02 0.14 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 31 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 32 H 0.06 0.90 7.39 -51.93 -0.38 0.52 16 33 H 0.09 1.33 7.64 -51.93 -0.40 0.93 16 34 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.09 1.18 6.80 -51.93 -0.35 0.82 16 37 H 0.04 0.37 7.53 -51.93 -0.39 -0.02 16 38 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 39 H 0.38 1.96 9.12 45.56 0.42 2.37 16 40 H 0.41 3.34 8.67 -40.82 -0.35 2.98 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.00 7.41 -51.93 -0.39 0.61 16 48 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -35.30 394.21 -7.68 -42.98 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.68 Total: 13.79 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.30 Total: 8.28 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.90 Total: -53.62 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.72 Total: -33.37 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.30 -7.68 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329642862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.250 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds