Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.46956 * 269.99721 * 3 2 1 5 5 H 1.48497 * 109.47183 * 29.99962 * 3 2 1 6 6 H 1.48505 * 109.47271 * 149.99618 * 3 2 1 7 7 C 1.38948 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00088 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99881 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00014 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47315 * 179.97438 * 12 10 9 14 14 C 1.47951 * 110.99865 * 189.99652 * 13 12 10 15 15 C 1.53936 * 86.18148 * 222.41637 * 14 13 12 16 16 C 1.52999 * 113.73872 * 138.08088 * 15 14 13 17 17 C 1.53000 * 109.47289 * 187.63100 * 16 15 14 18 18 O 1.42903 * 109.46905 * 184.89342 * 17 16 15 19 19 N 1.46500 * 113.73165 * 269.25959 * 15 14 13 20 20 C 1.34777 * 120.00201 * 293.87834 * 19 15 14 21 21 O 1.21286 * 119.99996 * 355.02414 * 20 19 15 22 22 C 1.50704 * 120.00214 * 175.02778 * 20 19 15 23 23 H 1.09003 * 110.74984 * 62.01583 * 22 20 19 24 24 C 1.55307 * 110.84430 * 185.71291 * 22 20 19 25 25 C 1.54948 * 100.93783 * 152.32063 * 24 22 20 26 26 O 1.43643 * 105.13753 * 323.55277 * 25 24 22 27 27 C 1.43243 * 109.97117 * 24.43195 * 26 25 24 28 28 C 1.48191 * 111.07090 * 90.55871 * 13 12 10 29 29 H 0.96992 * 120.00153 * 0.02562 * 1 2 3 30 30 H 0.96992 * 119.99926 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47059 * 59.99495 * 12 10 9 32 32 H 1.09000 * 109.46857 * 299.99480 * 12 10 9 33 33 H 1.09006 * 113.75839 * 108.10126 * 14 13 12 34 34 H 1.09002 * 113.86629 * 336.74245 * 14 13 12 35 35 H 1.09002 * 109.46687 * 307.63403 * 16 15 14 36 36 H 1.08998 * 109.47225 * 67.62852 * 16 15 14 37 37 H 1.08997 * 109.46736 * 304.89405 * 17 16 15 38 38 H 1.08999 * 109.46927 * 64.89610 * 17 16 15 39 39 H 0.96701 * 113.99786 * 179.97438 * 18 17 16 40 40 H 0.97007 * 120.00003 * 113.87696 * 19 15 14 41 41 H 1.09002 * 111.12225 * 270.23660 * 24 22 20 42 42 H 1.08998 * 111.12674 * 34.40455 * 24 22 20 43 43 H 1.09002 * 110.31128 * 204.63618 * 25 24 22 44 44 H 1.09005 * 110.39332 * 82.51713 * 25 24 22 45 45 H 1.08999 * 109.82208 * 238.77464 * 27 26 25 46 46 H 1.08997 * 109.90766 * 117.84430 * 27 26 25 47 47 H 1.09000 * 113.75704 * 23.24128 * 28 13 12 48 48 H 1.08998 * 113.82864 * 251.81250 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0005 14 6 1.5091 -7.2664 -0.2409 15 6 2.4123 -7.8392 0.8663 16 6 1.6845 -8.7777 1.8308 17 6 2.6141 -9.1371 2.9917 18 8 1.9764 -10.1016 3.8314 19 7 3.6728 -8.3964 0.3695 20 6 3.6625 -9.4932 -0.4137 21 8 2.6194 -10.0716 -0.6336 22 6 4.9471 -10.0009 -1.0164 23 1 5.6507 -10.2927 -0.2366 24 6 4.6730 -11.1801 -1.9892 25 6 5.8705 -11.0424 -2.9629 26 8 6.0805 -9.6282 -3.1015 27 6 5.5711 -8.9428 -1.9515 28 6 2.5345 -6.3939 1.3820 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6175 -4.9205 -0.8902 32 1 0.6170 -4.9209 0.8897 33 1 1.7008 -7.6898 -1.2269 34 1 0.4504 -7.2547 0.0183 35 1 0.7945 -8.2818 2.2180 36 1 1.3937 -9.6863 1.3035 37 1 3.5415 -9.5538 2.5988 38 1 2.8352 -8.2406 3.5709 39 1 2.5098 -10.3766 4.5897 40 1 4.5149 -7.9760 0.6043 41 1 4.7003 -12.1357 -1.4656 42 1 3.7253 -11.0468 -2.5108 43 1 5.6259 -11.4850 -3.9284 44 1 6.7575 -11.5173 -2.5436 45 1 4.8105 -8.2241 -2.2563 46 1 6.3821 -8.4271 -1.4373 47 1 1.7765 -6.1245 2.1176 48 1 3.5438 -6.1214 1.6904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329642862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -158.292468 kcal Electronic energy + Delta-G solvation = -30627.586730 eV Core-core repulsion = 26296.501390 eV Total energy + Delta-G solvation = -4331.085341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20262 -40.84827 -39.83075 -39.00562 -37.79603 -35.96527 -35.22157 -33.57172 -33.24522 -32.33897 -30.41627 -30.12095 -27.37856 -27.14693 -25.40758 -24.49657 -23.33318 -22.83244 -21.33680 -21.00358 -20.32025 -19.87510 -18.61222 -18.44508 -17.82213 -17.64974 -17.18862 -16.73516 -16.68726 -16.41426 -16.22625 -16.10907 -15.70863 -15.59596 -15.33649 -15.11258 -14.78885 -14.53234 -14.39304 -14.28937 -13.80652 -13.57829 -13.42785 -13.19377 -13.02819 -12.94012 -12.77582 -12.46697 -12.42842 -12.34039 -12.29492 -12.22535 -12.10587 -11.94698 -11.64397 -11.48968 -10.99051 -10.77951 -10.48990 -10.37731 -10.17750 -10.00261 -9.65582 -8.46143 -5.94735 1.37926 1.41534 1.51854 1.54070 1.98998 2.06675 2.28102 2.69537 2.87493 2.99694 3.20603 3.25652 3.29773 3.35941 3.71429 3.86498 3.89482 4.07867 4.12798 4.13971 4.18491 4.24364 4.29189 4.31330 4.37512 4.40902 4.49068 4.55149 4.64186 4.69425 4.72383 4.75477 4.77295 4.84478 4.91505 4.94285 5.12973 5.15071 5.31686 5.41345 5.51409 5.82308 5.95856 6.05056 6.48444 6.61125 6.88561 7.13729 7.17674 7.57629 8.13400 8.71432 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.002620 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.341119 B =10684.151342 C =12316.505855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.020 3.980 13 N -0.471 5.471 14 C 0.007 3.993 15 C 0.167 3.833 16 C -0.115 4.115 17 C 0.084 3.916 18 O -0.594 6.594 19 N -0.693 5.693 20 C 0.529 3.471 21 O -0.562 6.562 22 C -0.138 4.138 23 H 0.144 0.856 24 C -0.132 4.132 25 C 0.047 3.953 26 O -0.406 6.406 27 C 0.063 3.937 28 C 0.014 3.986 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.397 0.603 40 H 0.415 0.585 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -23.341 4.433 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.215 5.215 10 C 0.233 3.767 11 O -0.500 6.500 12 C -0.111 4.111 13 N -0.193 5.193 14 C -0.123 4.123 15 C 0.079 3.921 16 C -0.154 4.154 17 C 0.006 3.994 18 O -0.403 6.403 19 N -0.345 5.345 20 C 0.316 3.684 21 O -0.440 6.440 22 C -0.159 4.159 23 H 0.161 0.839 24 C -0.170 4.170 25 C -0.029 4.029 26 O -0.326 6.326 27 C -0.014 4.014 28 C -0.115 4.115 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.310 -23.162 3.202 24.499 hybrid contribution -0.389 1.091 0.906 1.470 sum 6.922 -22.071 4.108 23.493 Atomic orbital electron populations 1.69669 1.06850 1.29236 1.50603 1.26027 0.96523 1.02398 0.96416 0.84944 0.77965 0.76964 0.78579 1.19846 1.19571 1.19587 1.19646 0.92653 0.83989 1.49721 0.90309 1.41961 1.09271 1.04757 1.65500 1.20688 0.88261 0.85711 0.82079 1.90478 1.15621 1.87873 1.56020 1.22378 0.94556 0.90250 1.03939 1.68408 1.30781 1.00730 1.19420 1.24318 0.98322 0.89489 1.00129 1.21439 0.85446 0.91722 0.93456 1.21696 0.98761 0.99972 0.94965 1.22035 0.94689 0.91562 0.91091 1.86431 1.48567 1.62404 1.42902 1.45576 1.08959 1.28833 1.51087 1.20533 0.90764 0.79566 0.77552 1.90696 1.34307 1.58119 1.60875 1.22955 0.95530 0.97284 1.00121 0.83865 1.23131 0.99173 0.98458 0.96265 1.23618 0.97439 0.81148 1.00648 1.88415 1.82246 1.20103 1.41872 1.23080 0.98493 0.93896 0.85895 1.24435 1.04056 0.91408 0.91585 0.91364 0.77132 0.88102 0.89631 0.90414 0.88860 0.89920 0.91222 0.93144 0.92288 0.75303 0.74739 0.87574 0.91286 0.88781 0.89702 0.92792 0.88686 0.88652 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.90 13.05 21.66 0.28 -49.62 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.58 -29.51 5.29 -306.97 -1.62 -31.13 16 10 C 0.45 20.96 7.83 87.66 0.69 21.65 16 11 O -0.61 -33.52 16.01 -3.09 -0.05 -33.57 16 12 C 0.02 0.69 5.28 85.56 0.45 1.14 16 13 N -0.47 -14.45 5.65 -911.19 -5.15 -19.59 16 14 C 0.01 0.17 6.89 86.41 0.60 0.77 16 15 C 0.17 3.56 0.61 5.17 0.00 3.56 16 16 C -0.11 -2.33 4.86 30.59 0.15 -2.18 16 17 C 0.08 1.39 6.86 71.98 0.49 1.88 16 18 O -0.59 -10.60 13.66 -148.98 -2.04 -12.64 16 19 N -0.69 -12.98 4.42 -426.36 -1.88 -14.87 16 20 C 0.53 10.88 6.53 87.66 0.57 11.45 16 21 O -0.56 -15.44 13.83 -3.05 -0.04 -15.48 16 22 C -0.14 -2.06 3.39 -10.28 -0.03 -2.10 16 23 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 24 C -0.13 -2.01 6.23 32.05 0.20 -1.81 16 25 C 0.05 0.68 7.78 72.65 0.56 1.24 16 26 O -0.41 -8.77 11.36 -148.98 -1.69 -10.46 16 27 C 0.06 1.17 7.35 72.45 0.53 1.70 16 28 C 0.01 0.34 7.13 86.37 0.62 0.96 16 29 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 31 H 0.10 3.17 8.08 -2.39 -0.02 3.15 16 32 H 0.09 2.44 7.39 -2.39 -0.02 2.42 16 33 H 0.08 2.23 7.64 -2.38 -0.02 2.22 16 34 H 0.09 2.08 7.88 -2.39 -0.02 2.06 16 35 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.07 1.76 6.80 -2.39 -0.02 1.74 16 37 H 0.05 0.75 7.53 -2.39 -0.02 0.73 16 38 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 39 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 40 H 0.42 6.23 8.67 -92.70 -0.80 5.43 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.40 7.47 -2.39 -0.02 1.38 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 2.09 7.41 -2.39 -0.02 2.07 16 48 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 Total: -1.00 -77.27 394.21 -5.25 -82.52 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.20 Total: 39.83 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.11 Total: 20.08 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -8.37 Total: -115.21 kcal Atomic # 8 Polarization: -68.32 SS G_CDS: -3.82 Total: -72.14 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -77.27 -5.25 -82.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329642862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.769 kcal (2) G-P(sol) polarization free energy of solvation -77.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds