Wall clock time and date at job start Sat Apr 11 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46851 * 2 1 4 4 N 1.46502 * 109.46826 * 119.99453 * 2 1 3 5 5 C 1.36541 * 127.14588 * 300.14940 * 4 2 1 6 6 S 1.76195 * 126.48411 * 0.02562 * 5 4 2 7 7 N 1.31288 * 107.02919 * 180.23366 * 5 4 2 8 8 N 1.28523 * 109.85744 * 359.76998 * 7 5 4 9 9 C 1.30295 * 110.08013 * 0.02562 * 8 7 5 10 10 C 1.50703 * 126.34246 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46959 * 90.02512 * 10 9 8 12 12 N 1.46497 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00245 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99676 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99971 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47083 * 320.00492 * 15 13 12 17 17 N 1.46898 * 109.47113 * 200.00293 * 15 13 12 18 18 C 1.53000 * 109.46801 * 80.00207 * 15 13 12 19 19 C 1.52997 * 109.47060 * 184.99876 * 18 15 13 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00362 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47052 * 89.99717 * 24 22 20 26 26 H 1.48495 * 109.47307 * 209.99656 * 24 22 20 27 27 H 1.48500 * 109.47143 * 330.00164 * 24 22 20 28 28 H 1.08999 * 109.47338 * 300.00231 * 1 2 3 29 29 H 1.08999 * 109.47067 * 60.00481 * 1 2 3 30 30 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47338 * 239.99769 * 2 1 3 32 32 H 1.08999 * 109.46892 * 299.99626 * 3 2 1 33 33 H 1.08999 * 109.47338 * 59.99769 * 3 2 1 34 34 H 1.08998 * 109.46771 * 179.97438 * 3 2 1 35 35 H 1.40999 * 100.00407 * 270.24577 * 6 5 4 36 36 H 1.09004 * 109.46899 * 330.02218 * 10 9 8 37 37 H 1.08999 * 109.46867 * 210.02607 * 10 9 8 38 38 H 1.09004 * 109.47555 * 60.00108 * 11 10 9 39 39 H 1.09009 * 109.47408 * 299.99822 * 11 10 9 40 40 H 0.97000 * 120.00041 * 359.97438 * 12 11 10 41 41 H 1.00899 * 111.00057 * 300.00501 * 17 15 13 42 42 H 1.00902 * 110.99515 * 63.95638 * 17 15 13 43 43 H 1.09002 * 109.47398 * 305.00045 * 18 15 13 44 44 H 1.09001 * 109.47194 * 65.00225 * 18 15 13 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 47 47 H 0.96994 * 119.99814 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7777 -0.3551 2.4978 6 16 0.8111 1.0032 3.0682 7 7 2.4065 -1.2336 3.2438 8 7 3.0118 -2.0868 2.4971 9 6 2.8079 -1.8063 1.2412 10 6 3.3466 -2.5672 0.0572 11 6 2.3541 -3.6617 -0.3401 12 7 2.8781 -4.4018 -1.4907 13 6 2.1687 -5.4198 -2.0170 14 8 1.0963 -5.7227 -1.5384 15 6 2.7075 -6.1808 -3.2010 16 1 3.1763 -5.4853 -3.8971 17 7 1.6062 -6.8810 -3.8754 18 6 3.7435 -7.2002 -2.7233 19 6 4.3806 -7.8854 -3.9338 20 6 5.4006 -8.8900 -3.4634 21 1 5.5766 -9.0265 -2.4066 22 6 6.1085 -9.6357 -4.3820 23 7 6.9983 -10.5128 -3.9715 24 14 5.8026 -9.4012 -6.2099 25 1 6.7123 -8.3505 -6.7332 26 1 6.0597 -10.6783 -6.9226 27 1 4.3928 -8.9882 -6.4269 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.8073 1.9981 3.1437 36 1 4.3018 -3.0212 0.3212 37 1 3.4883 -1.8838 -0.7800 38 1 1.3990 -3.2077 -0.6041 39 1 2.2125 -4.3452 0.4972 40 1 3.7357 -4.1593 -1.8737 41 1 1.1551 -7.5320 -3.2503 42 1 0.9407 -6.2254 -4.2567 43 1 4.5153 -6.6909 -2.1462 44 1 3.2560 -7.9479 -2.0976 45 1 3.6088 -8.3948 -4.5109 46 1 4.8682 -7.1379 -4.5596 47 1 7.4965 -11.0370 -4.6178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345753694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:31 Heat of formation + Delta-G solvation = 29.763796 kcal Electronic energy + Delta-G solvation = -27092.172539 eV Core-core repulsion = 23244.287552 eV Total energy + Delta-G solvation = -3847.884987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.52852 -39.94049 -37.35305 -36.15562 -35.26905 -32.96246 -32.76501 -31.93682 -30.52162 -29.53902 -28.07265 -26.87167 -24.85990 -24.35763 -22.90934 -22.25319 -21.14968 -20.50305 -19.91074 -18.59886 -17.46933 -17.30783 -16.85527 -16.67523 -16.24902 -15.85772 -15.62755 -15.37720 -15.13804 -14.53908 -14.20487 -14.11061 -13.95393 -13.85547 -13.52631 -13.43589 -13.09879 -12.68765 -12.62062 -12.42917 -12.28073 -12.22050 -12.04812 -11.91680 -11.74701 -11.65666 -11.06832 -11.01103 -10.89393 -10.71570 -10.47270 -9.94967 -9.80871 -9.70416 -9.60036 -9.27686 -9.11849 -8.80875 -8.53464 -8.43968 -5.99813 -3.97632 0.41689 0.81498 1.72872 1.94891 2.37354 2.61349 2.98728 3.34475 3.42884 3.50319 3.71062 3.81181 4.07799 4.13454 4.28138 4.35502 4.50486 4.63486 4.71747 4.74604 4.83129 4.86377 4.93682 4.96745 5.01036 5.15413 5.29349 5.31508 5.36243 5.38933 5.48597 5.54451 5.59095 5.63297 6.11434 6.20415 6.27709 6.44915 6.85026 7.17559 7.33365 7.40549 7.57255 7.61864 7.85665 8.10072 8.14333 8.57459 9.05137 9.62885 11.13617 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.001927 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.948371 B =14525.054126 C =14932.048604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.126 3.874 3 C -0.172 4.172 4 N -0.451 5.451 5 C 0.143 3.857 6 S -0.004 6.004 7 N -0.236 5.236 8 N -0.280 5.280 9 C 0.207 3.793 10 C -0.049 4.049 11 C 0.125 3.875 12 N -0.731 5.731 13 C 0.485 3.515 14 O -0.549 6.549 15 C 0.076 3.924 16 H 0.099 0.901 17 N -0.811 5.811 18 C -0.088 4.088 19 C -0.004 4.004 20 C -0.522 4.522 21 H 0.069 0.931 22 C 0.065 3.935 23 N -0.906 5.906 24 Si 0.880 3.120 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.260 1.260 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.405 0.595 41 H 0.351 0.649 42 H 0.335 0.665 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.008 0.992 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 30.553 6.734 33.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.024 3.976 3 C -0.230 4.230 4 N -0.144 5.144 5 C -0.231 4.231 6 S 0.146 5.854 7 N -0.081 5.081 8 N -0.122 5.122 9 C -0.062 4.062 10 C -0.089 4.089 11 C 0.000 4.000 12 N -0.385 5.385 13 C 0.271 3.729 14 O -0.425 6.425 15 C -0.040 4.040 16 H 0.116 0.884 17 N -0.339 5.339 18 C -0.127 4.127 19 C -0.041 4.041 20 C -0.560 4.560 21 H 0.087 0.913 22 C -0.136 4.136 23 N -0.545 5.545 24 Si 0.707 3.293 25 H -0.206 1.206 26 H -0.216 1.216 27 H -0.184 1.184 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.240 0.760 41 H 0.165 0.835 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.026 0.974 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.344 29.761 8.027 33.589 hybrid contribution 0.630 1.196 -1.692 2.166 sum -12.714 30.957 6.335 34.060 Atomic orbital electron populations 1.22361 0.91845 1.03985 1.04927 1.21690 0.96857 0.94067 0.85011 1.22353 1.01953 0.94113 1.04620 1.47303 1.37191 1.22382 1.07538 1.25779 1.08823 1.05366 0.83167 1.87033 1.10406 1.02100 1.85840 1.74830 1.07004 1.00550 1.25690 1.74220 1.19223 1.19911 0.98877 1.24880 0.95461 0.88822 0.97062 1.20313 1.00580 0.96299 0.91723 1.21168 0.95758 0.93128 0.89992 1.46078 1.24360 1.34900 1.33126 1.22698 0.84797 0.79308 0.86102 1.90673 1.22487 1.66784 1.62600 1.21874 0.94778 0.96180 0.91124 0.88350 1.59032 1.14957 1.20550 1.39321 1.21486 0.94754 0.95954 1.00470 1.19484 0.95926 0.95528 0.93210 1.21179 1.19769 1.19844 0.95167 0.91273 1.25027 0.94753 0.94792 0.99007 1.69924 1.25301 1.24793 1.34463 0.86771 0.79560 0.77342 0.85635 1.20551 1.21622 1.18427 0.89692 0.89760 0.91517 0.87277 0.89361 0.91138 0.91819 0.93411 0.86592 0.88901 0.91718 0.90397 0.76037 0.83510 0.85361 0.92088 0.92124 0.94793 0.97371 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 9.24 37.16 0.34 -0.39 16 2 C 0.13 0.58 3.46 -67.93 -0.23 0.34 16 3 C -0.17 -0.54 9.24 37.16 0.34 -0.20 16 4 N -0.45 -3.61 2.66 -106.46 -0.28 -3.89 16 5 C 0.14 1.40 7.86 -88.33 -0.69 0.71 16 6 S 0.00 -0.03 22.17 -107.50 -2.38 -2.41 16 7 N -0.24 -3.11 12.23 30.68 0.38 -2.74 16 8 N -0.28 -3.69 12.17 33.00 0.40 -3.29 16 9 C 0.21 2.00 7.32 -153.99 -1.13 0.87 16 10 C -0.05 -0.34 5.55 -27.88 -0.15 -0.49 16 11 C 0.13 1.18 5.66 -4.05 -0.02 1.16 16 12 N -0.73 -7.38 5.56 -60.29 -0.33 -7.72 16 13 C 0.49 6.72 7.07 -10.98 -0.08 6.64 16 14 O -0.55 -9.38 16.25 5.56 0.09 -9.29 16 15 C 0.08 1.11 3.15 -68.86 -0.22 0.90 16 16 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 17 N -0.81 -12.07 8.44 -5.65 -0.05 -12.11 16 18 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 19 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 20 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 21 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 22 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 23 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 24 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 28 H 0.08 0.39 6.02 -51.93 -0.31 0.08 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.36 6.89 -51.93 -0.36 0.00 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.24 5.88 -51.93 -0.31 -0.07 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 0.46 9.33 96.90 0.90 1.36 16 36 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.38 7.24 -51.93 -0.38 0.00 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.40 3.07 8.47 -40.82 -0.35 2.72 16 41 H 0.35 5.44 8.58 -39.29 -0.34 5.10 16 42 H 0.33 4.20 9.06 -39.29 -0.36 3.85 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.03 0.81 6.81 -51.93 -0.35 0.46 16 46 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -36.78 397.61 -8.64 -45.42 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.05 Total: 5.95 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.51 Total: -5.66 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.89 Total: -56.98 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.38 Total: -2.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.78 -8.64 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345753694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.184 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds