Wall clock time and date at job start Sat Apr 11 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46851 * 2 1 4 4 N 1.46502 * 109.46826 * 119.99453 * 2 1 3 5 5 C 1.36541 * 127.14588 * 300.14940 * 4 2 1 6 6 S 1.76195 * 126.48411 * 0.02562 * 5 4 2 7 7 N 1.31288 * 107.02919 * 180.23366 * 5 4 2 8 8 N 1.28523 * 109.85744 * 359.76998 * 7 5 4 9 9 C 1.30295 * 110.08013 * 0.02562 * 8 7 5 10 10 C 1.50703 * 126.34246 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.46959 * 90.02512 * 10 9 8 12 12 N 1.46497 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00245 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99676 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99971 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47083 * 320.00492 * 15 13 12 17 17 N 1.46898 * 109.47113 * 200.00293 * 15 13 12 18 18 C 1.53000 * 109.46801 * 80.00207 * 15 13 12 19 19 C 1.52997 * 109.47060 * 184.99876 * 18 15 13 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00362 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99850 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47052 * 89.99717 * 24 22 20 26 26 H 1.48495 * 109.47307 * 209.99656 * 24 22 20 27 27 H 1.48500 * 109.47143 * 330.00164 * 24 22 20 28 28 H 1.08999 * 109.47338 * 300.00231 * 1 2 3 29 29 H 1.08999 * 109.47067 * 60.00481 * 1 2 3 30 30 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47338 * 239.99769 * 2 1 3 32 32 H 1.08999 * 109.46892 * 299.99626 * 3 2 1 33 33 H 1.08999 * 109.47338 * 59.99769 * 3 2 1 34 34 H 1.08998 * 109.46771 * 179.97438 * 3 2 1 35 35 H 1.40999 * 100.00407 * 270.24577 * 6 5 4 36 36 H 1.09004 * 109.46899 * 330.02218 * 10 9 8 37 37 H 1.08999 * 109.46867 * 210.02607 * 10 9 8 38 38 H 1.09004 * 109.47555 * 60.00108 * 11 10 9 39 39 H 1.09009 * 109.47408 * 299.99822 * 11 10 9 40 40 H 0.97000 * 120.00041 * 359.97438 * 12 11 10 41 41 H 1.00899 * 111.00057 * 300.00501 * 17 15 13 42 42 H 1.00902 * 110.99515 * 63.95638 * 17 15 13 43 43 H 1.09002 * 109.47398 * 305.00045 * 18 15 13 44 44 H 1.09001 * 109.47194 * 65.00225 * 18 15 13 45 45 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 46 46 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 47 47 H 0.96994 * 119.99814 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7777 -0.3551 2.4978 6 16 0.8111 1.0032 3.0682 7 7 2.4065 -1.2336 3.2438 8 7 3.0118 -2.0868 2.4971 9 6 2.8079 -1.8063 1.2412 10 6 3.3466 -2.5672 0.0572 11 6 2.3541 -3.6617 -0.3401 12 7 2.8781 -4.4018 -1.4907 13 6 2.1687 -5.4198 -2.0170 14 8 1.0963 -5.7227 -1.5384 15 6 2.7075 -6.1808 -3.2010 16 1 3.1763 -5.4853 -3.8971 17 7 1.6062 -6.8810 -3.8754 18 6 3.7435 -7.2002 -2.7233 19 6 4.3806 -7.8854 -3.9338 20 6 5.4006 -8.8900 -3.4634 21 1 5.5766 -9.0265 -2.4066 22 6 6.1085 -9.6357 -4.3820 23 7 6.9983 -10.5128 -3.9715 24 14 5.8026 -9.4012 -6.2099 25 1 6.7123 -8.3505 -6.7332 26 1 6.0597 -10.6783 -6.9226 27 1 4.3928 -8.9882 -6.4269 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.8073 1.9981 3.1437 36 1 4.3018 -3.0212 0.3212 37 1 3.4883 -1.8838 -0.7800 38 1 1.3990 -3.2077 -0.6041 39 1 2.2125 -4.3452 0.4972 40 1 3.7357 -4.1593 -1.8737 41 1 1.1551 -7.5320 -3.2503 42 1 0.9407 -6.2254 -4.2567 43 1 4.5153 -6.6909 -2.1462 44 1 3.2560 -7.9479 -2.0976 45 1 3.6088 -8.3948 -4.5109 46 1 4.8682 -7.1379 -4.5596 47 1 7.4965 -11.0370 -4.6178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345753694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:30 Heat of formation + Delta-G solvation = 1.627684 kcal Electronic energy + Delta-G solvation = -27093.392612 eV Core-core repulsion = 23244.287552 eV Total energy + Delta-G solvation = -3849.105060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.23567 -41.04481 -37.85899 -37.14602 -36.56732 -34.76080 -33.73727 -32.48805 -32.25743 -30.38144 -28.35604 -28.32461 -25.97863 -25.09709 -24.12333 -22.86849 -22.15990 -21.72236 -21.06556 -19.16984 -18.94967 -18.21362 -17.99087 -17.61389 -17.17964 -16.88064 -16.46999 -16.21757 -16.06100 -15.70765 -15.41910 -14.99235 -14.84829 -14.74150 -14.60946 -14.40275 -14.01215 -13.87300 -13.49212 -13.42752 -13.28296 -12.84915 -12.76617 -12.62980 -12.61011 -12.52352 -12.35051 -12.28040 -11.98914 -11.74046 -11.72159 -11.56566 -11.29040 -11.27968 -11.11755 -10.68526 -10.46138 -10.22548 -9.65123 -9.29846 -8.22414 -6.25832 -0.15524 0.16495 1.17816 1.35814 1.41779 1.46115 1.50218 1.59826 1.69383 2.11034 2.44013 3.12164 3.14177 3.36882 3.58688 3.59799 3.66549 3.79826 3.90230 3.97040 4.02733 4.10968 4.18976 4.30967 4.31762 4.49410 4.59714 4.69446 4.73383 4.74904 4.76780 4.83941 4.88027 4.89613 5.12254 5.17688 5.24731 5.29510 5.54058 5.58706 5.68843 5.77533 6.09334 6.35295 6.43399 6.55831 6.83611 7.14084 7.34319 7.38683 8.94511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.001927 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.948371 B =14525.054126 C =14932.048604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 C -0.169 4.169 4 N -0.443 5.443 5 C 0.144 3.856 6 S 0.006 5.994 7 N -0.286 5.286 8 N -0.327 5.327 9 C 0.206 3.794 10 C -0.039 4.039 11 C 0.132 3.868 12 N -0.711 5.711 13 C 0.488 3.512 14 O -0.584 6.584 15 C 0.087 3.913 16 H 0.129 0.871 17 N -0.820 5.820 18 C -0.082 4.082 19 C 0.002 3.998 20 C -0.531 4.531 21 H 0.026 0.974 22 C -0.001 4.001 23 N -0.957 5.957 24 Si 0.954 3.046 25 H -0.262 1.262 26 H -0.292 1.292 27 H -0.243 1.243 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.421 0.579 41 H 0.344 0.656 42 H 0.349 0.651 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.028 0.972 46 H 0.026 0.974 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 33.846 3.947 36.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 C -0.227 4.227 4 N -0.136 5.136 5 C -0.232 4.232 6 S 0.156 5.844 7 N -0.130 5.130 8 N -0.169 5.169 9 C -0.064 4.064 10 C -0.078 4.078 11 C 0.006 3.994 12 N -0.365 5.365 13 C 0.273 3.727 14 O -0.464 6.464 15 C -0.029 4.029 16 H 0.147 0.853 17 N -0.349 5.349 18 C -0.120 4.120 19 C -0.035 4.035 20 C -0.569 4.569 21 H 0.044 0.956 22 C -0.197 4.197 23 N -0.598 5.598 24 Si 0.778 3.222 25 H -0.187 1.187 26 H -0.219 1.219 27 H -0.166 1.166 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.259 0.741 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.082 33.110 5.235 36.359 hybrid contribution 0.852 0.220 -0.714 1.133 sum -13.230 33.330 4.521 36.144 Atomic orbital electron populations 1.22367 0.91586 1.03063 1.05916 1.22105 0.97101 0.94990 0.84159 1.22358 1.01658 0.93024 1.05630 1.47549 1.36262 1.21796 1.07965 1.26229 1.07796 1.05398 0.83797 1.86962 1.10341 1.01225 1.85846 1.74720 1.09000 1.02035 1.27229 1.74087 1.20958 1.21218 1.00645 1.25219 0.95276 0.89209 0.96738 1.20349 0.99488 0.95982 0.92012 1.21067 0.96811 0.93002 0.88484 1.45881 1.24445 1.33626 1.32533 1.22477 0.84499 0.79874 0.85809 1.90669 1.24220 1.68030 1.63478 1.21695 0.93820 0.95425 0.91966 0.85339 1.59027 1.15490 1.21114 1.39242 1.21286 0.95852 0.96374 0.98509 1.19373 0.94458 0.94770 0.94902 1.21592 1.20871 1.21077 0.93360 0.95569 1.26070 0.94429 0.94416 1.04813 1.70096 1.26926 1.26356 1.36419 0.85592 0.80527 0.77552 0.78565 1.18732 1.21860 1.16580 0.90199 0.87314 0.93326 0.85335 0.87010 0.91492 0.92219 0.91242 0.86276 0.84898 0.91381 0.93600 0.74128 0.84220 0.83696 0.91260 0.94571 0.95321 0.95527 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.24 71.98 0.66 -0.41 16 2 C 0.12 0.76 3.46 44.99 0.16 0.91 16 3 C -0.17 -0.53 9.24 71.98 0.67 0.13 16 4 N -0.44 -6.54 2.66 -490.73 -1.30 -7.84 16 5 C 0.14 2.76 7.86 179.55 1.41 4.18 16 6 S 0.01 0.08 22.17 -56.49 -1.25 -1.18 16 7 N -0.29 -7.79 12.23 -56.85 -0.70 -8.49 16 8 N -0.33 -8.91 12.17 -49.52 -0.60 -9.52 16 9 C 0.21 3.84 7.32 137.63 1.01 4.85 16 10 C -0.04 -0.45 5.55 29.85 0.17 -0.29 16 11 C 0.13 2.31 5.66 86.38 0.49 2.80 16 12 N -0.71 -12.65 5.56 -463.05 -2.57 -15.22 16 13 C 0.49 12.62 7.07 87.66 0.62 13.24 16 14 O -0.58 -19.55 16.25 -3.01 -0.05 -19.60 16 15 C 0.09 2.31 3.15 44.17 0.14 2.45 16 16 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 17 N -0.82 -22.72 8.44 -171.80 -1.45 -24.17 16 18 C -0.08 -2.94 4.78 30.59 0.15 -2.80 16 19 C 0.00 0.11 3.93 29.85 0.12 0.23 16 20 C -0.53 -30.31 9.66 25.60 0.25 -30.07 16 21 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 22 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 23 N -0.96 -60.54 13.96 21.45 0.30 -60.24 16 24 Si 0.95 43.95 27.47 68.60 1.88 45.84 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 28 H 0.08 0.59 6.02 -2.39 -0.01 0.58 16 29 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.13 0.33 6.89 -2.39 -0.02 0.32 16 32 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.07 0.27 5.88 -2.39 -0.01 0.26 16 34 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.12 0.89 9.33 73.80 0.69 1.58 16 36 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.13 0.51 7.24 -2.39 -0.02 0.49 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.42 4.87 8.47 -92.71 -0.79 4.08 16 41 H 0.34 10.40 8.58 -89.69 -0.77 9.63 16 42 H 0.35 7.88 9.06 -89.69 -0.81 7.07 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.03 1.31 6.81 -2.39 -0.02 1.29 16 46 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 47 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -84.22 397.61 -0.15 -84.37 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.70 Total: 20.43 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 6.29 Total: -4.39 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -6.33 Total: -125.48 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.25 Total: -1.18 kcal Total: -84.22 -0.15 -84.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345753694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.002 kcal (2) G-P(sol) polarization free energy of solvation -84.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds