Wall clock time and date at job start Sat Apr 11 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 C 1.52995 * 109.47261 * 120.00427 * 2 1 3 5 5 C 1.50700 * 109.47218 * 174.99903 * 4 2 1 6 6 O 1.21280 * 120.00101 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99812 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99835 * 185.20364 * 7 5 4 9 9 H 1.09007 * 109.46978 * 322.45056 * 8 7 5 10 10 C 1.52997 * 109.46919 * 82.44438 * 8 7 5 11 11 C 1.50708 * 109.46898 * 56.35793 * 10 8 7 12 12 N 1.34777 * 119.99403 * 183.75744 * 11 10 8 13 13 O 1.21278 * 119.99960 * 3.75721 * 11 10 8 14 14 C 1.50691 * 109.47286 * 202.45061 * 8 7 5 15 15 O 1.21285 * 119.99882 * 345.66169 * 14 8 7 16 16 N 1.34774 * 120.00381 * 165.66721 * 14 8 7 17 17 C 1.47584 * 134.49407 * 174.46727 * 16 14 8 18 18 C 1.53942 * 86.11755 * 204.66359 * 17 16 14 19 19 O 1.42898 * 113.74087 * 90.74308 * 18 17 16 20 20 C 1.50701 * 113.74378 * 221.94132 * 18 17 16 21 21 H 1.07999 * 119.99825 * 358.08067 * 20 18 17 22 22 C 1.37877 * 120.00485 * 178.07359 * 20 18 17 23 23 N 1.31520 * 119.99753 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00274 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46921 * 60.00298 * 24 22 20 26 26 H 1.48494 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46947 * 300.00109 * 24 22 20 28 28 C 1.47930 * 134.50166 * 354.50701 * 16 14 8 29 29 H 1.08996 * 109.47291 * 299.99589 * 1 2 3 30 30 H 1.09006 * 109.47241 * 59.99857 * 1 2 3 31 31 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47074 * 240.00795 * 2 1 3 33 33 H 1.08994 * 109.47410 * 300.00574 * 3 2 1 34 34 H 1.09007 * 109.46504 * 60.00446 * 3 2 1 35 35 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46970 * 54.99922 * 4 2 1 37 37 H 1.09003 * 109.46918 * 295.00181 * 4 2 1 38 38 H 0.96996 * 119.99839 * 5.20318 * 7 5 4 39 39 H 1.09004 * 109.46821 * 176.34958 * 10 8 7 40 40 H 1.09000 * 109.47732 * 296.35496 * 10 8 7 41 41 H 0.96996 * 120.00496 * 359.97438 * 12 11 10 42 42 H 0.97006 * 119.99430 * 180.02562 * 12 11 10 43 43 H 1.09001 * 113.76245 * 90.36402 * 17 16 14 44 44 H 1.08995 * 113.87519 * 318.98105 * 17 16 14 45 45 H 0.96701 * 114.00189 * 181.92291 * 19 18 17 46 46 H 0.96996 * 119.99907 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.86581 * 41.07094 * 28 16 14 48 48 H 1.09001 * 113.76721 * 269.58303 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8295 1.1888 6 8 4.1450 -0.3748 0.2398 7 7 4.2149 -1.4314 2.1893 8 6 5.6799 -1.4365 2.1875 9 1 6.0416 -1.5566 1.1662 10 6 6.1952 -0.1140 2.7588 11 6 5.6229 0.0946 4.1372 12 7 5.8795 1.2353 4.8077 13 8 4.9315 -0.7638 4.6431 14 6 6.1794 -2.5783 3.0347 15 8 5.4210 -3.1514 3.7880 16 7 7.4687 -2.9626 2.9555 17 6 8.3045 -3.9364 3.6844 18 6 9.5023 -3.0662 3.2627 19 8 9.8314 -2.0444 4.2059 20 6 10.7019 -3.8609 2.8151 21 1 10.6752 -4.9402 2.8417 22 6 11.8336 -3.2102 2.3714 23 7 11.8663 -1.8958 2.3393 24 14 13.3203 -4.1953 1.8159 25 1 12.9383 -5.0678 0.6766 26 1 14.3979 -3.2670 1.3894 27 1 13.8065 -5.0342 2.9406 28 6 8.6151 -2.5772 2.1035 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6054 -1.7199 1.2950 37 1 1.7516 -0.1584 2.1369 38 1 3.7293 -1.8613 2.9106 39 1 7.2832 -0.1431 2.8177 40 1 5.8883 0.7063 2.1099 41 1 6.4328 1.9217 4.4033 42 1 5.5114 1.3694 5.6952 43 1 8.3069 -4.9320 3.2406 44 1 8.1288 -3.9507 4.7600 45 1 10.5646 -1.4769 3.9312 46 1 12.6625 -1.4380 2.0275 47 1 8.6859 -1.5055 1.9179 48 1 8.7086 -3.1744 1.1965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362375622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:41 Heat of formation + Delta-G solvation = -136.345083 kcal Electronic energy + Delta-G solvation = -31483.160550 eV Core-core repulsion = 27153.026919 eV Total energy + Delta-G solvation = -4330.133631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58381 -39.33533 -38.90965 -37.35076 -35.79221 -34.45328 -33.98022 -33.53128 -32.25420 -31.32423 -28.59633 -28.12083 -27.22642 -25.83517 -25.29421 -24.22096 -21.15933 -20.71465 -19.89827 -19.77682 -18.50655 -17.69396 -17.26546 -17.10287 -16.75659 -16.10625 -15.75068 -15.59830 -15.19337 -15.05881 -14.86938 -14.40725 -14.23311 -14.13324 -13.91954 -13.52896 -13.38167 -13.05770 -12.71635 -12.49687 -12.41714 -12.25598 -12.05898 -12.01199 -11.98604 -11.74560 -11.58428 -11.25835 -11.09061 -11.05790 -10.98893 -10.81894 -10.56416 -10.32386 -9.84389 -9.70652 -9.58260 -9.55909 -9.23289 -8.95473 -8.78190 -8.44461 -7.84707 -6.42435 -4.52116 2.66401 2.81532 3.01655 3.14987 3.18101 3.20832 3.24680 3.62104 3.67241 4.16769 4.60915 4.68850 4.76088 4.77537 4.86695 4.88783 5.07708 5.17806 5.35582 5.44341 5.47766 5.49220 5.54488 5.57313 5.62228 5.65788 5.74248 5.83166 5.93267 5.98737 6.16913 6.21425 6.28615 6.33641 6.43999 6.52010 6.61246 6.66430 6.85549 7.06395 7.38307 7.60123 7.68304 7.79006 8.28696 8.40492 8.46025 8.50806 8.74506 9.18852 9.37265 10.64306 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.002875 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.180878 B = 9735.718682 C =10178.924081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.703 5.703 8 C 0.152 3.848 9 H 0.112 0.888 10 C -0.153 4.153 11 C 0.515 3.485 12 N -0.859 5.859 13 O -0.518 6.518 14 C 0.528 3.472 15 O -0.534 6.534 16 N -0.634 5.634 17 C 0.116 3.884 18 C 0.240 3.760 19 O -0.572 6.572 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.898 5.898 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.076 3.924 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.399 0.601 42 H 0.399 0.601 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.391 0.609 46 H 0.273 0.727 47 H 0.068 0.932 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 8.226 -2.617 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.357 5.357 8 C 0.042 3.958 9 H 0.130 0.870 10 C -0.194 4.194 11 C 0.299 3.701 12 N -0.423 5.423 13 O -0.392 6.392 14 C 0.315 3.685 15 O -0.411 6.411 16 N -0.369 5.369 17 C -0.006 4.006 18 C 0.199 3.801 19 O -0.384 6.384 20 C -0.575 4.575 21 H 0.089 0.911 22 C -0.130 4.130 23 N -0.538 5.538 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.047 4.047 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.227 0.773 42 H 0.229 0.771 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.245 0.755 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.141 7.516 -2.408 17.075 hybrid contribution 1.300 0.140 -0.170 1.318 sum -13.842 7.656 -2.579 16.027 Atomic orbital electron populations 1.21864 0.95092 1.01707 1.01848 1.20857 0.94917 0.96909 0.97232 1.21957 1.03248 0.94978 1.00812 1.21757 0.91894 1.03106 1.00856 1.20745 0.90269 0.77412 0.81665 1.90651 1.70466 1.48237 1.32952 1.45884 1.05724 1.57314 1.26801 1.20316 0.81960 0.92868 1.00631 0.87046 1.22095 1.03734 0.99037 0.94539 1.20541 0.80371 0.81602 0.87554 1.43822 1.56339 1.20479 1.21652 1.90821 1.37562 1.41661 1.69169 1.19776 0.80878 0.84379 0.83442 1.90638 1.54474 1.56300 1.39730 1.50174 1.07594 1.41079 1.38060 1.23421 0.86825 0.93149 0.97209 1.19824 0.90275 0.85605 0.84425 1.86067 1.57801 1.47527 1.46979 1.21461 0.98421 0.93883 1.43756 0.91132 1.25052 0.98856 0.95138 0.93926 1.69377 1.30149 1.07177 1.47145 0.86394 0.81225 0.79728 0.79220 1.19896 1.21024 1.19899 1.24425 0.82364 1.00305 0.97571 0.92705 0.92468 0.92684 0.90364 0.93059 0.93528 0.90596 0.88926 0.88926 0.74461 0.86763 0.87801 0.77266 0.77120 0.89709 0.91240 0.75458 0.91654 0.91357 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.08 -0.79 2.57 -90.62 -0.23 -1.02 16 3 C -0.15 -1.55 8.93 37.16 0.33 -1.21 16 4 C -0.14 -1.40 5.18 -27.89 -0.14 -1.54 16 5 C 0.51 7.04 7.47 -10.98 -0.08 6.96 16 6 O -0.54 -8.71 13.64 5.56 0.08 -8.63 16 7 N -0.70 -10.58 4.12 -54.93 -0.23 -10.80 16 8 C 0.15 2.50 2.36 -69.09 -0.16 2.34 16 9 H 0.11 1.84 7.59 -51.92 -0.39 1.44 16 10 C -0.15 -2.19 5.58 -27.88 -0.16 -2.35 16 11 C 0.52 7.78 7.66 -10.98 -0.08 7.69 16 12 N -0.86 -9.25 8.87 31.22 0.28 -8.97 16 13 O -0.52 -9.73 13.42 -14.89 -0.20 -9.93 16 14 C 0.53 10.60 6.37 -10.99 -0.07 10.53 16 15 O -0.53 -12.15 15.15 -14.89 -0.23 -12.38 16 16 N -0.63 -13.00 3.62 -178.01 -0.64 -13.64 16 17 C 0.12 2.49 8.23 -2.97 -0.02 2.46 16 18 C 0.24 5.51 1.40 -90.85 -0.13 5.39 16 19 O -0.57 -13.90 13.48 -35.23 -0.48 -14.37 16 20 C -0.54 -13.05 8.61 -34.44 -0.30 -13.35 16 21 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 22 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 23 N -0.90 -21.78 11.20 55.43 0.62 -21.16 16 24 Si 0.91 19.05 29.54 -169.99 -5.02 14.03 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 C 0.08 1.55 8.01 -2.77 -0.02 1.53 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.86 7.96 -51.92 -0.41 0.45 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.08 0.94 5.95 -51.93 -0.31 0.63 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.42 6.60 6.84 -40.82 -0.28 6.32 16 39 H 0.11 1.68 7.19 -51.93 -0.37 1.31 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.40 3.16 8.83 -40.82 -0.36 2.80 16 42 H 0.40 3.87 8.93 -40.82 -0.36 3.50 16 43 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 44 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.39 9.55 6.60 45.56 0.30 9.85 16 46 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 47 H 0.07 1.34 7.22 -51.93 -0.37 0.97 16 48 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -30.58 393.99 -7.46 -38.05 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -6.76 Total: 23.58 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: -0.82 Total: 18.30 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.03 Total: -54.58 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.82 Total: -45.32 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.58 -7.46 -38.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362375622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.298 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds