Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 C 1.52995 * 109.47261 * 120.00427 * 2 1 3 5 5 C 1.50700 * 109.47218 * 174.99903 * 4 2 1 6 6 O 1.21280 * 120.00101 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99812 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99835 * 185.20364 * 7 5 4 9 9 H 1.09007 * 109.46978 * 322.45056 * 8 7 5 10 10 C 1.52997 * 109.46919 * 82.44438 * 8 7 5 11 11 C 1.50708 * 109.46898 * 56.35793 * 10 8 7 12 12 N 1.34777 * 119.99403 * 183.75744 * 11 10 8 13 13 O 1.21278 * 119.99960 * 3.75721 * 11 10 8 14 14 C 1.50691 * 109.47286 * 202.45061 * 8 7 5 15 15 O 1.21285 * 119.99882 * 345.66169 * 14 8 7 16 16 N 1.34774 * 120.00381 * 165.66721 * 14 8 7 17 17 C 1.47584 * 134.49407 * 174.46727 * 16 14 8 18 18 C 1.53942 * 86.11755 * 204.66359 * 17 16 14 19 19 O 1.42898 * 113.74087 * 90.74308 * 18 17 16 20 20 C 1.50701 * 113.74378 * 221.94132 * 18 17 16 21 21 H 1.07999 * 119.99825 * 358.08067 * 20 18 17 22 22 C 1.37877 * 120.00485 * 178.07359 * 20 18 17 23 23 N 1.31520 * 119.99753 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00274 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46921 * 60.00298 * 24 22 20 26 26 H 1.48494 * 109.46990 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46947 * 300.00109 * 24 22 20 28 28 C 1.47930 * 134.50166 * 354.50701 * 16 14 8 29 29 H 1.08996 * 109.47291 * 299.99589 * 1 2 3 30 30 H 1.09006 * 109.47241 * 59.99857 * 1 2 3 31 31 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47074 * 240.00795 * 2 1 3 33 33 H 1.08994 * 109.47410 * 300.00574 * 3 2 1 34 34 H 1.09007 * 109.46504 * 60.00446 * 3 2 1 35 35 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46970 * 54.99922 * 4 2 1 37 37 H 1.09003 * 109.46918 * 295.00181 * 4 2 1 38 38 H 0.96996 * 119.99839 * 5.20318 * 7 5 4 39 39 H 1.09004 * 109.46821 * 176.34958 * 10 8 7 40 40 H 1.09000 * 109.47732 * 296.35496 * 10 8 7 41 41 H 0.96996 * 120.00496 * 359.97438 * 12 11 10 42 42 H 0.97006 * 119.99430 * 180.02562 * 12 11 10 43 43 H 1.09001 * 113.76245 * 90.36402 * 17 16 14 44 44 H 1.08995 * 113.87519 * 318.98105 * 17 16 14 45 45 H 0.96701 * 114.00189 * 181.92291 * 19 18 17 46 46 H 0.96996 * 119.99907 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.86581 * 41.07094 * 28 16 14 48 48 H 1.09001 * 113.76721 * 269.58303 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8295 1.1888 6 8 4.1450 -0.3748 0.2398 7 7 4.2149 -1.4314 2.1893 8 6 5.6799 -1.4365 2.1875 9 1 6.0416 -1.5566 1.1662 10 6 6.1952 -0.1140 2.7588 11 6 5.6229 0.0946 4.1372 12 7 5.8795 1.2353 4.8077 13 8 4.9315 -0.7638 4.6431 14 6 6.1794 -2.5783 3.0347 15 8 5.4210 -3.1514 3.7880 16 7 7.4687 -2.9626 2.9555 17 6 8.3045 -3.9364 3.6844 18 6 9.5023 -3.0662 3.2627 19 8 9.8314 -2.0444 4.2059 20 6 10.7019 -3.8609 2.8151 21 1 10.6752 -4.9402 2.8417 22 6 11.8336 -3.2102 2.3714 23 7 11.8663 -1.8958 2.3393 24 14 13.3203 -4.1953 1.8159 25 1 12.9383 -5.0678 0.6766 26 1 14.3979 -3.2670 1.3894 27 1 13.8065 -5.0342 2.9406 28 6 8.6151 -2.5772 2.1035 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6054 -1.7199 1.2950 37 1 1.7516 -0.1584 2.1369 38 1 3.7293 -1.8613 2.9106 39 1 7.2832 -0.1431 2.8177 40 1 5.8883 0.7063 2.1099 41 1 6.4328 1.9217 4.4033 42 1 5.5114 1.3694 5.6952 43 1 8.3069 -4.9320 3.2406 44 1 8.1288 -3.9507 4.7600 45 1 10.5646 -1.4769 3.9312 46 1 12.6625 -1.4380 2.0275 47 1 8.6859 -1.5055 1.9179 48 1 8.7086 -3.1744 1.1965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362375622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = -160.229970 kcal Electronic energy + Delta-G solvation = -31484.196277 eV Core-core repulsion = 27153.026919 eV Total energy + Delta-G solvation = -4331.169357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90701 -40.73053 -40.17628 -38.95397 -36.70000 -35.78962 -35.66582 -34.64062 -34.12070 -32.53250 -30.22796 -29.03193 -27.92315 -27.49043 -26.99846 -25.60421 -22.22361 -22.13485 -21.11911 -20.87030 -19.99800 -19.34891 -18.61187 -18.27032 -17.98956 -17.40042 -17.23718 -16.99696 -16.56726 -16.36135 -16.16968 -15.90049 -15.66075 -15.37091 -14.90983 -14.78294 -14.58828 -14.44910 -14.34926 -13.89452 -13.63179 -13.45118 -13.41810 -13.27363 -13.13978 -12.99104 -12.77873 -12.75138 -12.72738 -12.24379 -12.17864 -12.06408 -11.74240 -11.56371 -11.38438 -11.08344 -10.85757 -10.77756 -10.62821 -10.58940 -10.24101 -10.15765 -9.54978 -8.24883 -6.40518 1.48857 1.51024 1.51444 1.57466 1.62363 1.67240 1.71550 2.30741 2.42506 2.57401 2.97756 3.30008 3.59465 3.75682 3.79845 3.90419 3.95637 4.03934 4.18131 4.30406 4.35207 4.43350 4.47204 4.50915 4.60703 4.66715 4.71108 4.77488 4.80380 4.87126 4.89543 4.94472 5.06682 5.12666 5.25154 5.30456 5.31075 5.50231 5.55362 5.74753 5.91053 5.95413 6.42477 6.53078 6.63762 6.81925 7.11194 7.20221 7.32529 7.36213 7.47614 8.80702 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.002875 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.180878 B = 9735.718682 C =10178.924081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.511 3.489 6 O -0.568 6.568 7 N -0.703 5.703 8 C 0.157 3.843 9 H 0.111 0.889 10 C -0.146 4.146 11 C 0.509 3.491 12 N -0.837 5.837 13 O -0.559 6.559 14 C 0.525 3.475 15 O -0.563 6.563 16 N -0.634 5.634 17 C 0.114 3.886 18 C 0.226 3.774 19 O -0.582 6.582 20 C -0.557 4.557 21 H 0.068 0.932 22 C 0.037 3.963 23 N -0.911 5.911 24 Si 0.963 3.037 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.090 3.910 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.414 0.586 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.415 0.585 42 H 0.407 0.593 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.388 0.612 46 H 0.276 0.724 47 H 0.076 0.924 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 9.110 -3.306 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.448 6.448 7 N -0.357 5.357 8 C 0.047 3.953 9 H 0.129 0.871 10 C -0.187 4.187 11 C 0.293 3.707 12 N -0.402 5.402 13 O -0.437 6.437 14 C 0.314 3.686 15 O -0.442 6.442 16 N -0.369 5.369 17 C -0.009 4.009 18 C 0.184 3.816 19 O -0.394 6.394 20 C -0.596 4.596 21 H 0.086 0.914 22 C -0.164 4.164 23 N -0.551 5.551 24 Si 0.789 3.211 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.203 1.203 28 C -0.033 4.033 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.246 0.754 42 H 0.238 0.762 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.242 0.758 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.837 8.451 -3.104 18.218 hybrid contribution 1.529 -0.103 0.082 1.534 sum -14.309 8.348 -3.022 16.839 Atomic orbital electron populations 1.21819 0.93100 1.02458 1.02609 1.20858 0.96482 0.96318 0.96200 1.21920 1.01591 0.95543 1.01734 1.21829 0.89034 1.04423 1.01783 1.21370 0.91593 0.76350 0.80679 1.90645 1.71283 1.49144 1.33710 1.45932 1.04974 1.57691 1.27102 1.20224 0.83093 0.92303 0.99683 0.87094 1.22060 1.03350 0.98566 0.94763 1.20681 0.80056 0.82099 0.87842 1.43627 1.55433 1.19499 1.21655 1.90811 1.39617 1.43273 1.70029 1.20393 0.80246 0.84719 0.83256 1.90615 1.55110 1.57394 1.41114 1.50171 1.07960 1.40882 1.37858 1.23416 0.86808 0.93969 0.96687 1.20012 0.90586 0.85701 0.85252 1.86055 1.57682 1.47840 1.47810 1.21668 0.99423 0.94029 1.44432 0.91350 1.25655 1.00806 0.96007 0.93951 1.69429 1.30681 1.07879 1.47110 0.85519 0.78492 0.78473 0.78607 1.19536 1.20720 1.20266 1.24241 0.81387 1.00788 0.96835 0.91791 0.91877 0.91977 0.91998 0.92315 0.92461 0.93059 0.87338 0.87401 0.74807 0.87044 0.85561 0.75375 0.76188 0.88384 0.92628 0.75815 0.91442 0.90580 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 2 C -0.08 -1.43 2.57 -10.79 -0.03 -1.46 16 3 C -0.15 -2.83 8.93 71.98 0.64 -2.19 16 4 C -0.13 -2.46 5.18 29.85 0.15 -2.31 16 5 C 0.51 13.59 7.47 87.66 0.66 14.25 16 6 O -0.57 -17.82 13.64 -3.03 -0.04 -17.87 16 7 N -0.70 -20.80 4.12 -446.10 -1.84 -22.64 16 8 C 0.16 5.10 2.36 44.24 0.10 5.20 16 9 H 0.11 3.61 7.59 -2.38 -0.02 3.59 16 10 C -0.15 -4.05 5.58 29.85 0.17 -3.88 16 11 C 0.51 14.89 7.66 87.66 0.67 15.57 16 12 N -0.84 -16.66 8.87 -173.53 -1.54 -18.20 16 13 O -0.56 -20.92 13.42 16.53 0.22 -20.70 16 14 C 0.52 21.13 6.37 87.65 0.56 21.68 16 15 O -0.56 -25.94 15.15 16.51 0.25 -25.69 16 16 N -0.63 -26.02 3.62 -839.32 -3.03 -29.05 16 17 C 0.11 4.92 8.23 86.48 0.71 5.64 16 18 C 0.23 10.37 1.40 -10.88 -0.02 10.35 16 19 O -0.58 -28.47 13.48 -148.98 -2.01 -30.48 16 20 C -0.56 -26.97 8.61 25.60 0.22 -26.75 16 21 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 22 C 0.04 1.76 5.39 84.65 0.46 2.22 16 23 N -0.91 -43.60 11.20 21.45 0.24 -43.36 16 24 Si 0.96 38.46 29.54 68.60 2.03 40.48 16 25 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 28 C 0.09 3.63 8.01 86.42 0.69 4.32 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.31 7.96 -2.38 -0.02 1.29 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 1.23 5.95 -2.39 -0.01 1.21 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 13.02 6.84 -92.71 -0.63 12.39 16 39 H 0.11 3.17 7.19 -2.39 -0.02 3.15 16 40 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.42 5.68 8.83 -92.71 -0.82 4.86 16 42 H 0.41 7.22 8.93 -92.70 -0.83 6.40 16 43 H 0.10 3.93 8.09 -2.39 -0.02 3.91 16 44 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.39 19.05 6.60 -74.06 -0.49 18.56 16 46 H 0.28 12.59 8.31 -92.71 -0.77 11.82 16 47 H 0.08 2.94 7.22 -2.39 -0.02 2.92 16 48 H 0.09 3.52 8.09 -2.39 -0.02 3.50 16 Total: -1.00 -65.22 393.99 -1.81 -67.03 By element: Atomic # 1 Polarization: 60.73 SS G_CDS: -1.74 Total: 58.99 kcal Atomic # 6 Polarization: 35.83 SS G_CDS: 5.65 Total: 41.48 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.17 Total: -113.25 kcal Atomic # 8 Polarization: -93.16 SS G_CDS: -1.58 Total: -94.74 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.48 kcal Total: -65.22 -1.81 -67.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362375622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.200 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds