Wall clock time and date at job start Sat Apr 11 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47090 * 2 1 4 4 C 1.53006 * 109.46643 * 119.99608 * 2 1 3 5 5 C 1.50705 * 109.46949 * 175.00287 * 4 2 1 6 6 O 1.21281 * 119.99816 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00067 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00246 * 184.98957 * 7 5 4 9 9 H 1.08998 * 109.47168 * 35.30795 * 8 7 5 10 10 C 1.52995 * 109.47322 * 275.30946 * 8 7 5 11 11 C 1.50696 * 109.47071 * 303.07860 * 10 8 7 12 12 N 1.34779 * 120.00111 * 179.30598 * 11 10 8 13 13 O 1.21280 * 119.99957 * 359.30581 * 11 10 8 14 14 C 1.50706 * 109.47294 * 155.30824 * 8 7 5 15 15 O 1.21270 * 119.99851 * 16.57301 * 14 8 7 16 16 N 1.34773 * 119.99787 * 196.57780 * 14 8 7 17 17 C 1.47070 * 136.06299 * 4.70845 * 16 14 8 18 18 C 1.53234 * 88.08319 * 207.20416 * 17 16 14 19 19 O 1.42901 * 114.20237 * 87.72408 * 18 17 16 20 20 C 1.50703 * 114.32428 * 220.46836 * 18 17 16 21 21 H 1.07999 * 120.00260 * 93.75470 * 20 18 17 22 22 C 1.37875 * 119.99696 * 273.75962 * 20 18 17 23 23 N 1.31516 * 120.00351 * 359.97438 * 22 20 18 24 24 Si 1.86810 * 119.99829 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46768 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47017 * 119.99779 * 24 22 20 27 27 H 1.48501 * 109.46977 * 239.99869 * 24 22 20 28 28 C 1.47074 * 136.05536 * 185.07156 * 16 14 8 29 29 H 1.09000 * 109.47647 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.46924 * 60.00697 * 1 2 3 31 31 H 1.09003 * 109.47379 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47647 * 239.99808 * 2 1 3 33 33 H 1.08994 * 109.46905 * 300.00023 * 3 2 1 34 34 H 1.09004 * 109.46822 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.46822 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47083 * 55.00425 * 4 2 1 37 37 H 1.09003 * 109.47066 * 295.00067 * 4 2 1 38 38 H 0.97008 * 120.00148 * 4.99525 * 7 5 4 39 39 H 1.08995 * 109.47533 * 63.07948 * 10 8 7 40 40 H 1.09001 * 109.47368 * 183.08329 * 10 8 7 41 41 H 0.96995 * 119.99904 * 0.02562 * 12 11 10 42 42 H 0.97002 * 119.99795 * 179.97438 * 12 11 10 43 43 H 1.09001 * 113.45901 * 321.93192 * 17 16 14 44 44 H 1.09000 * 113.46947 * 92.36748 * 17 16 14 45 45 H 0.96702 * 113.99931 * 86.29911 * 19 18 17 46 46 H 0.97001 * 120.00318 * 180.02562 * 23 22 20 47 47 H 1.08989 * 113.47068 * 267.62726 * 28 16 14 48 48 H 1.08997 * 113.46511 * 38.00817 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8293 1.1891 6 8 4.1449 -0.3748 0.2401 7 7 4.2147 -1.4320 2.1893 8 6 5.6796 -1.4412 2.1852 9 1 6.0477 -0.5036 1.7688 10 6 6.1800 -2.6090 1.3328 11 6 5.6097 -3.8990 1.8636 12 7 5.9045 -5.0660 1.2573 13 8 4.8855 -3.8869 2.8363 14 6 6.1849 -1.5968 3.5965 15 8 5.4379 -1.9873 4.4684 16 7 7.4669 -1.3019 3.8896 17 6 8.6171 -0.7413 3.1644 18 6 9.5313 -1.5150 4.1203 19 8 9.8247 -2.8487 3.6994 20 6 10.7499 -0.7502 4.5689 21 1 10.7262 -0.1893 5.4915 22 6 11.8951 -0.7665 3.8013 23 7 11.9242 -1.4498 2.6779 24 14 13.4060 0.1810 4.3576 25 1 13.1169 0.8615 5.6454 26 1 14.5412 -0.7592 4.5378 27 1 13.7604 1.1942 3.3315 28 6 8.3332 -1.4050 5.0736 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6053 -1.7198 1.2953 37 1 1.7515 -0.1582 2.1371 38 1 3.7290 -1.8599 2.9118 39 1 5.8606 -2.4682 0.3002 40 1 7.2685 -2.6489 1.3741 41 1 6.4840 -5.0757 0.4796 42 1 5.5377 -5.8964 1.5992 43 1 8.6857 -1.0807 2.1308 44 1 8.7050 0.3409 3.2600 45 1 10.5800 -2.9145 3.0991 46 1 12.7300 -1.4615 2.1381 47 1 8.3448 -0.5015 5.6830 48 1 8.1603 -2.3069 5.6607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362375623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:45 Heat of formation + Delta-G solvation = -132.490563 kcal Electronic energy + Delta-G solvation = -31415.812421 eV Core-core repulsion = 27085.845935 eV Total energy + Delta-G solvation = -4329.966486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59576 -39.40149 -38.95831 -37.41734 -35.78899 -34.44970 -34.06124 -33.51842 -32.23359 -31.33288 -28.69758 -28.10826 -27.20943 -25.86132 -25.15730 -24.22921 -21.14355 -20.78279 -19.92688 -19.81870 -18.49167 -17.73609 -17.24446 -17.11275 -16.70657 -16.05254 -15.79117 -15.63852 -15.23496 -15.02958 -14.76998 -14.52869 -14.25390 -14.05903 -13.87835 -13.65097 -13.23836 -13.09466 -12.83170 -12.49216 -12.40486 -12.21405 -12.14996 -12.00450 -11.95112 -11.75644 -11.59709 -11.21512 -11.11217 -11.02143 -10.98399 -10.81192 -10.50994 -10.29668 -9.85238 -9.70578 -9.57497 -9.54052 -9.24420 -8.95488 -8.79797 -8.43317 -7.86768 -6.44954 -4.54573 2.65272 2.83113 3.02277 3.10974 3.16384 3.21270 3.25315 3.63769 3.67786 4.15019 4.62098 4.69891 4.75710 4.78588 4.87119 4.88454 5.08907 5.19261 5.35424 5.45077 5.48435 5.49652 5.56452 5.57573 5.61000 5.68368 5.76331 5.83959 5.89209 5.99976 6.15931 6.22320 6.30826 6.36061 6.44181 6.51464 6.62491 6.65151 6.87230 7.06682 7.39997 7.58964 7.68719 7.76318 8.28739 8.42108 8.46524 8.50552 8.73719 9.16922 9.42921 10.61778 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002934 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.652521 B = 9539.445084 C =10301.632529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.154 4.154 4 C -0.136 4.136 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.702 5.702 8 C 0.154 3.846 9 H 0.111 0.889 10 C -0.152 4.152 11 C 0.515 3.485 12 N -0.859 5.859 13 O -0.519 6.519 14 C 0.533 3.467 15 O -0.532 6.532 16 N -0.636 5.636 17 C 0.070 3.930 18 C 0.241 3.759 19 O -0.571 6.571 20 C -0.532 4.532 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.110 3.890 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.417 0.583 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.400 0.600 42 H 0.398 0.602 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.085 0.915 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 -0.543 -7.626 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.211 4.211 4 C -0.176 4.176 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.357 5.357 8 C 0.045 3.955 9 H 0.128 0.872 10 C -0.194 4.194 11 C 0.300 3.700 12 N -0.422 5.422 13 O -0.393 6.393 14 C 0.320 3.680 15 O -0.409 6.409 16 N -0.371 5.371 17 C -0.053 4.053 18 C 0.199 3.801 19 O -0.384 6.384 20 C -0.570 4.570 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.539 5.539 24 Si 0.736 3.264 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.012 4.012 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.256 0.744 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.228 0.772 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.250 0.750 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.132 -0.438 -6.985 16.672 hybrid contribution 1.334 0.022 -0.195 1.348 sum -13.798 -0.416 -7.180 15.560 Atomic orbital electron populations 1.21866 0.95107 1.01648 1.01899 1.20852 0.94896 0.96955 0.97135 1.21967 1.03346 0.94913 1.00880 1.21764 0.91868 1.03042 1.00964 1.20748 0.90301 0.77042 0.81998 1.90649 1.70404 1.48407 1.32870 1.45898 1.05685 1.56968 1.27147 1.20302 0.81969 0.99460 0.93784 0.87171 1.22076 1.03686 0.92052 1.01572 1.20543 0.80687 0.85691 0.83123 1.43813 1.54389 1.09132 1.34916 1.90806 1.36434 1.86963 1.25131 1.19660 0.80296 0.78427 0.89581 1.90647 1.54682 1.46881 1.48673 1.49631 1.08408 1.61592 1.17447 1.24217 0.82861 0.99449 0.98812 1.19489 0.90190 0.81682 0.88760 1.86049 1.56036 1.26656 1.69698 1.21468 0.96601 1.30372 1.08552 0.90885 1.25070 0.99120 0.94742 0.94111 1.69254 1.29620 1.41603 1.13445 0.86261 0.81706 0.79495 0.78970 1.19421 1.20640 1.20644 1.23313 0.86852 1.00852 0.90180 0.92651 0.92468 0.92747 0.90471 0.93073 0.93415 0.90526 0.88991 0.88820 0.74388 0.87523 0.86911 0.77241 0.77128 0.91791 0.89889 0.75030 0.91634 0.89739 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.08 -0.78 2.57 -90.62 -0.23 -1.01 16 3 C -0.15 -1.62 8.93 37.16 0.33 -1.29 16 4 C -0.14 -1.40 5.18 -27.88 -0.14 -1.55 16 5 C 0.51 7.05 7.50 -10.99 -0.08 6.97 16 6 O -0.55 -8.68 13.64 5.56 0.08 -8.60 16 7 N -0.70 -10.58 4.14 -54.94 -0.23 -10.81 16 8 C 0.15 2.55 2.38 -69.08 -0.16 2.38 16 9 H 0.11 1.80 7.66 -51.93 -0.40 1.41 16 10 C -0.15 -2.22 5.61 -27.89 -0.16 -2.38 16 11 C 0.52 7.92 7.66 -10.99 -0.08 7.83 16 12 N -0.86 -9.53 8.87 31.22 0.28 -9.25 16 13 O -0.52 -9.82 13.28 -15.26 -0.20 -10.03 16 14 C 0.53 10.71 6.45 -10.98 -0.07 10.63 16 15 O -0.53 -12.12 15.14 -15.26 -0.23 -12.35 16 16 N -0.64 -13.06 3.69 -185.38 -0.68 -13.74 16 17 C 0.07 1.42 7.83 -8.64 -0.07 1.36 16 18 C 0.24 5.54 1.57 -91.39 -0.14 5.39 16 19 O -0.57 -14.01 13.54 -35.23 -0.48 -14.48 16 20 C -0.53 -12.87 8.69 -34.44 -0.30 -13.17 16 21 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 22 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 23 N -0.90 -21.80 11.01 55.43 0.61 -21.19 16 24 Si 0.91 18.94 29.54 -169.99 -5.02 13.92 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 28 C 0.11 2.37 8.04 -8.50 -0.07 2.30 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.42 6.62 6.76 -40.82 -0.28 6.34 16 39 H 0.11 1.37 8.09 -51.93 -0.42 0.95 16 40 H 0.11 1.68 7.56 -51.93 -0.39 1.29 16 41 H 0.40 3.31 8.83 -40.82 -0.36 2.95 16 42 H 0.40 3.98 8.93 -40.82 -0.36 3.62 16 43 H 0.06 1.27 7.56 -51.93 -0.39 0.87 16 44 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 45 H 0.39 9.73 6.32 45.56 0.29 10.02 16 46 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 47 H 0.08 1.67 8.10 -51.94 -0.42 1.25 16 48 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -30.53 394.24 -7.68 -38.21 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -6.81 Total: 24.07 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: -0.94 Total: 18.31 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.02 Total: -54.99 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.83 Total: -45.46 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.53 -7.68 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362375623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.277 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds