Wall clock time and date at job start Sat Apr 11 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47090 * 2 1 4 4 C 1.53006 * 109.46643 * 119.99608 * 2 1 3 5 5 C 1.50705 * 109.46949 * 175.00287 * 4 2 1 6 6 O 1.21281 * 119.99816 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00067 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00246 * 184.98957 * 7 5 4 9 9 H 1.08998 * 109.47168 * 35.30795 * 8 7 5 10 10 C 1.52995 * 109.47322 * 275.30946 * 8 7 5 11 11 C 1.50696 * 109.47071 * 303.07860 * 10 8 7 12 12 N 1.34779 * 120.00111 * 179.30598 * 11 10 8 13 13 O 1.21280 * 119.99957 * 359.30581 * 11 10 8 14 14 C 1.50706 * 109.47294 * 155.30824 * 8 7 5 15 15 O 1.21270 * 119.99851 * 16.57301 * 14 8 7 16 16 N 1.34773 * 119.99787 * 196.57780 * 14 8 7 17 17 C 1.47070 * 136.06299 * 4.70845 * 16 14 8 18 18 C 1.53234 * 88.08319 * 207.20416 * 17 16 14 19 19 O 1.42901 * 114.20237 * 87.72408 * 18 17 16 20 20 C 1.50703 * 114.32428 * 220.46836 * 18 17 16 21 21 H 1.07999 * 120.00260 * 93.75470 * 20 18 17 22 22 C 1.37875 * 119.99696 * 273.75962 * 20 18 17 23 23 N 1.31516 * 120.00351 * 359.97438 * 22 20 18 24 24 Si 1.86810 * 119.99829 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46768 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47017 * 119.99779 * 24 22 20 27 27 H 1.48501 * 109.46977 * 239.99869 * 24 22 20 28 28 C 1.47074 * 136.05536 * 185.07156 * 16 14 8 29 29 H 1.09000 * 109.47647 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.46924 * 60.00697 * 1 2 3 31 31 H 1.09003 * 109.47379 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47647 * 239.99808 * 2 1 3 33 33 H 1.08994 * 109.46905 * 300.00023 * 3 2 1 34 34 H 1.09004 * 109.46822 * 59.99878 * 3 2 1 35 35 H 1.08998 * 109.46822 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47083 * 55.00425 * 4 2 1 37 37 H 1.09003 * 109.47066 * 295.00067 * 4 2 1 38 38 H 0.97008 * 120.00148 * 4.99525 * 7 5 4 39 39 H 1.08995 * 109.47533 * 63.07948 * 10 8 7 40 40 H 1.09001 * 109.47368 * 183.08329 * 10 8 7 41 41 H 0.96995 * 119.99904 * 0.02562 * 12 11 10 42 42 H 0.97002 * 119.99795 * 179.97438 * 12 11 10 43 43 H 1.09001 * 113.45901 * 321.93192 * 17 16 14 44 44 H 1.09000 * 113.46947 * 92.36748 * 17 16 14 45 45 H 0.96702 * 113.99931 * 86.29911 * 19 18 17 46 46 H 0.97001 * 120.00318 * 180.02562 * 23 22 20 47 47 H 1.08989 * 113.47068 * 267.62726 * 28 16 14 48 48 H 1.08997 * 113.46511 * 38.00817 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8293 1.1891 6 8 4.1449 -0.3748 0.2401 7 7 4.2147 -1.4320 2.1893 8 6 5.6796 -1.4412 2.1852 9 1 6.0477 -0.5036 1.7688 10 6 6.1800 -2.6090 1.3328 11 6 5.6097 -3.8990 1.8636 12 7 5.9045 -5.0660 1.2573 13 8 4.8855 -3.8869 2.8363 14 6 6.1849 -1.5968 3.5965 15 8 5.4379 -1.9873 4.4684 16 7 7.4669 -1.3019 3.8896 17 6 8.6171 -0.7413 3.1644 18 6 9.5313 -1.5150 4.1203 19 8 9.8247 -2.8487 3.6994 20 6 10.7499 -0.7502 4.5689 21 1 10.7262 -0.1893 5.4915 22 6 11.8951 -0.7665 3.8013 23 7 11.9242 -1.4498 2.6779 24 14 13.4060 0.1810 4.3576 25 1 13.1169 0.8615 5.6454 26 1 14.5412 -0.7592 4.5378 27 1 13.7604 1.1942 3.3315 28 6 8.3332 -1.4050 5.0736 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6053 -1.7198 1.2953 37 1 1.7515 -0.1582 2.1371 38 1 3.7290 -1.8599 2.9118 39 1 5.8606 -2.4682 0.3002 40 1 7.2685 -2.6489 1.3741 41 1 6.4840 -5.0757 0.4796 42 1 5.5377 -5.8964 1.5992 43 1 8.6857 -1.0807 2.1308 44 1 8.7050 0.3409 3.2600 45 1 10.5800 -2.9145 3.0991 46 1 12.7300 -1.4615 2.1381 47 1 8.3448 -0.5015 5.6830 48 1 8.1603 -2.3069 5.6607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362375623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:44 Heat of formation + Delta-G solvation = -156.305353 kcal Electronic energy + Delta-G solvation = -31416.845107 eV Core-core repulsion = 27085.845935 eV Total energy + Delta-G solvation = -4330.999173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94334 -40.82968 -40.20083 -39.01233 -36.70553 -35.88172 -35.66283 -34.64993 -34.09824 -32.55032 -30.33305 -29.02339 -27.92812 -27.52881 -26.85260 -25.61958 -22.24988 -22.20001 -21.18379 -20.87006 -19.98825 -19.39485 -18.60190 -18.27568 -17.96294 -17.37902 -17.23829 -16.99630 -16.63349 -16.46016 -16.04524 -15.90709 -15.74743 -15.26299 -15.04032 -14.80060 -14.57153 -14.45765 -14.41256 -13.90284 -13.60016 -13.45454 -13.40824 -13.24985 -13.22132 -13.00486 -12.78416 -12.74017 -12.70436 -12.22450 -12.11851 -12.04806 -11.74897 -11.56525 -11.39285 -11.08706 -10.87020 -10.77608 -10.64391 -10.59433 -10.23204 -10.15814 -9.57166 -8.26607 -6.42276 1.46429 1.47061 1.51650 1.59948 1.62153 1.67365 1.73599 2.31140 2.42178 2.57026 2.95435 3.32763 3.60511 3.74039 3.77902 3.90308 3.94489 4.03357 4.14199 4.29591 4.35546 4.42491 4.46765 4.51587 4.62476 4.67738 4.70804 4.77225 4.79636 4.86988 4.89271 4.93609 5.06744 5.12344 5.25185 5.29676 5.30649 5.50299 5.54994 5.74923 5.90187 5.92725 6.41440 6.53381 6.63010 6.84314 7.09719 7.19854 7.31358 7.35431 7.51903 8.79542 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002934 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.652521 B = 9539.445084 C =10301.632529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.153 4.153 4 C -0.132 4.132 5 C 0.511 3.489 6 O -0.568 6.568 7 N -0.703 5.703 8 C 0.159 3.841 9 H 0.112 0.888 10 C -0.146 4.146 11 C 0.508 3.492 12 N -0.838 5.838 13 O -0.559 6.559 14 C 0.530 3.470 15 O -0.561 6.561 16 N -0.636 5.636 17 C 0.083 3.917 18 C 0.225 3.775 19 O -0.583 6.583 20 C -0.551 4.551 21 H 0.072 0.928 22 C 0.035 3.965 23 N -0.913 5.913 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.109 3.891 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.415 0.585 42 H 0.407 0.593 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.390 0.610 46 H 0.277 0.723 47 H 0.100 0.900 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -0.136 -8.544 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.210 4.210 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.447 6.447 7 N -0.357 5.357 8 C 0.050 3.950 9 H 0.129 0.871 10 C -0.187 4.187 11 C 0.293 3.707 12 N -0.402 5.402 13 O -0.437 6.437 14 C 0.319 3.681 15 O -0.440 6.440 16 N -0.371 5.371 17 C -0.040 4.040 18 C 0.183 3.817 19 O -0.396 6.396 20 C -0.589 4.589 21 H 0.090 0.910 22 C -0.166 4.166 23 N -0.554 5.554 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.203 1.203 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.253 0.747 39 H 0.145 0.855 40 H 0.128 0.872 41 H 0.246 0.754 42 H 0.238 0.762 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.246 0.754 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.823 -0.051 -7.947 17.706 hybrid contribution 1.561 -0.152 0.083 1.571 sum -14.261 -0.203 -7.864 16.287 Atomic orbital electron populations 1.21819 0.93073 1.02498 1.02594 1.20847 0.96478 0.96083 0.96273 1.21937 1.01500 0.95821 1.01728 1.21840 0.89037 1.04406 1.01847 1.21375 0.91633 0.75950 0.81079 1.90643 1.71208 1.49211 1.33648 1.45943 1.04915 1.57314 1.27496 1.20212 0.83106 1.00275 0.91444 0.87068 1.22041 1.03339 0.91193 1.02144 1.20701 0.80404 0.86795 0.82849 1.43627 1.53580 1.08321 1.34720 1.90795 1.38406 1.87587 1.26913 1.20288 0.79675 0.77337 0.90787 1.90625 1.55334 1.48057 1.49959 1.49652 1.08749 1.61698 1.16966 1.24028 0.81856 0.99565 0.98504 1.19685 0.90601 0.81281 0.90132 1.86036 1.55885 1.27896 1.69750 1.21660 0.97529 1.30877 1.08814 0.91024 1.25698 1.01219 0.95465 0.94203 1.69301 1.30266 1.41970 1.13872 0.85360 0.78606 0.78254 0.78515 1.19367 1.20817 1.20252 1.23320 0.86794 1.00868 0.90416 0.91901 0.91861 0.91843 0.91731 0.92232 0.92608 0.93280 0.87252 0.87422 0.74731 0.85489 0.87174 0.75387 0.76199 0.91220 0.88954 0.75441 0.91329 0.88214 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 2 C -0.08 -1.40 2.57 -10.79 -0.03 -1.43 16 3 C -0.15 -3.04 8.93 71.98 0.64 -2.40 16 4 C -0.13 -2.48 5.18 29.85 0.15 -2.33 16 5 C 0.51 13.61 7.50 87.66 0.66 14.27 16 6 O -0.57 -17.73 13.64 -3.03 -0.04 -17.77 16 7 N -0.70 -20.81 4.14 -446.11 -1.85 -22.66 16 8 C 0.16 5.20 2.38 44.25 0.11 5.30 16 9 H 0.11 3.59 7.66 -2.39 -0.02 3.57 16 10 C -0.15 -4.13 5.61 29.85 0.17 -3.96 16 11 C 0.51 15.21 7.66 87.66 0.67 15.88 16 12 N -0.84 -17.37 8.87 -173.53 -1.54 -18.91 16 13 O -0.56 -21.10 13.28 16.88 0.22 -20.88 16 14 C 0.53 21.34 6.45 87.66 0.57 21.90 16 15 O -0.56 -25.85 15.14 16.91 0.26 -25.59 16 16 N -0.64 -26.11 3.69 -859.28 -3.17 -29.28 16 17 C 0.08 3.37 7.83 83.09 0.65 4.02 16 18 C 0.22 10.33 1.57 -11.29 -0.02 10.32 16 19 O -0.58 -28.79 13.54 -148.98 -2.02 -30.81 16 20 C -0.55 -26.50 8.69 25.60 0.22 -26.28 16 21 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 22 C 0.03 1.65 5.40 84.65 0.46 2.11 16 23 N -0.91 -43.81 11.01 21.45 0.24 -43.58 16 24 Si 0.97 38.24 29.54 68.60 2.03 40.26 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 28 C 0.11 4.70 8.04 83.18 0.67 5.37 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.26 5.95 -2.39 -0.01 1.24 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.41 13.05 6.76 -92.70 -0.63 12.42 16 39 H 0.13 3.06 8.09 -2.39 -0.02 3.04 16 40 H 0.11 3.18 7.56 -2.39 -0.02 3.17 16 41 H 0.42 6.06 8.83 -92.71 -0.82 5.24 16 42 H 0.41 7.53 8.93 -92.71 -0.83 6.71 16 43 H 0.07 2.72 7.56 -2.39 -0.02 2.70 16 44 H 0.09 3.55 8.10 -2.39 -0.02 3.53 16 45 H 0.39 19.44 6.32 -74.06 -0.47 18.97 16 46 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 47 H 0.10 3.95 8.10 -2.39 -0.02 3.93 16 48 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.12 394.24 -2.01 -67.13 By element: Atomic # 1 Polarization: 62.20 SS G_CDS: -1.71 Total: 60.49 kcal Atomic # 6 Polarization: 36.02 SS G_CDS: 5.58 Total: 41.60 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -6.32 Total: -114.43 kcal Atomic # 8 Polarization: -93.47 SS G_CDS: -1.58 Total: -95.05 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Total: -65.12 -2.01 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362375623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.178 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds