Wall clock time and date at job start Sat Apr 11 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48502 * 109.47277 * 269.99776 * 3 2 1 5 5 H 1.48501 * 109.47262 * 29.99714 * 3 2 1 6 6 H 1.48499 * 109.47372 * 150.00339 * 3 2 1 7 7 C 1.38950 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99928 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99962 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99621 * 180.02562 * 13 12 10 15 15 H 1.08991 * 112.85035 * 23.80613 * 14 13 12 16 16 C 1.53785 * 113.61112 * 155.00755 * 14 13 12 17 17 C 1.53774 * 87.08051 * 139.97879 * 16 14 13 18 18 H 1.09007 * 113.61625 * 89.20134 * 17 16 14 19 19 C 1.53002 * 113.61407 * 220.01556 * 17 16 14 20 20 N 1.46498 * 109.47335 * 185.00189 * 19 17 16 21 21 C 1.34772 * 120.00215 * 179.97438 * 20 19 17 22 22 O 1.21282 * 120.00076 * 359.97438 * 21 20 19 23 23 C 1.50705 * 120.00263 * 179.97438 * 21 20 19 24 24 H 1.08991 * 109.57747 * 304.83937 * 23 21 20 25 25 C 1.53146 * 109.52247 * 64.99872 * 23 21 20 26 26 O 1.43073 * 109.14937 * 175.21481 * 25 23 21 27 27 C 1.43076 * 113.59578 * 302.04912 * 26 25 23 28 28 C 1.53146 * 109.14935 * 57.94883 * 27 26 25 29 29 O 1.43070 * 109.52499 * 184.67235 * 23 21 20 30 30 C 1.53777 * 87.08289 * 334.56279 * 17 16 14 31 31 H 0.97002 * 120.00080 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00583 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47002 * 60.00204 * 12 10 9 34 34 H 1.08992 * 109.47076 * 300.00205 * 12 10 9 35 35 H 1.00894 * 111.00748 * 303.95702 * 13 12 10 36 36 H 1.09000 * 113.61752 * 25.43080 * 16 14 13 37 37 H 1.08998 * 113.60948 * 254.52674 * 16 14 13 38 38 H 1.08993 * 109.47531 * 65.00065 * 19 17 16 39 39 H 1.09006 * 109.47185 * 305.00013 * 19 17 16 40 40 H 0.96998 * 120.00095 * 0.02562 * 20 19 17 41 41 H 1.08996 * 109.52874 * 295.11888 * 25 23 21 42 42 H 1.09003 * 109.52413 * 55.31579 * 25 23 21 43 43 H 1.09007 * 109.52119 * 298.05112 * 27 26 25 44 44 H 1.08994 * 109.58181 * 177.88650 * 27 26 25 45 45 H 1.09006 * 109.51952 * 184.78461 * 28 27 26 46 46 H 1.09001 * 109.57291 * 64.62747 * 28 27 26 47 47 H 1.09001 * 113.61036 * 139.98095 * 30 17 16 48 48 H 1.08996 * 113.61462 * 270.88139 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4981 -7.2708 -0.0008 15 1 0.4884 -7.2046 -0.4057 16 6 2.3269 -8.4210 -0.5968 17 6 1.7629 -9.3054 0.5276 18 1 0.8257 -9.7976 0.2676 19 6 2.7922 -10.2660 1.1265 20 7 2.1346 -11.1421 2.0992 21 6 2.8500 -12.0760 2.7568 22 8 4.0383 -12.1913 2.5430 23 6 2.1736 -12.9769 3.7578 24 1 1.6621 -12.3720 4.5064 25 6 1.1573 -13.8688 3.0388 26 8 0.6012 -14.7962 3.9756 27 6 1.5801 -15.6210 4.6148 28 6 2.5965 -14.7290 5.3337 29 8 3.1526 -13.8016 4.3969 30 6 1.5776 -8.0147 1.3428 31 1 -0.4850 0.8401 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6168 -4.9209 -0.8897 34 1 0.6175 -4.9205 0.8902 35 1 2.8328 -5.9125 -0.7824 36 1 3.4034 -8.2636 -0.5302 37 1 2.0029 -8.7218 -1.5931 38 1 3.5761 -9.6949 1.6238 39 1 3.2310 -10.8698 0.3321 40 1 1.1840 -11.0507 2.2694 41 1 0.3618 -13.2515 2.6214 42 1 1.6546 -14.4148 2.2372 43 1 2.0916 -16.2259 3.8661 44 1 1.0917 -16.2733 5.3386 45 1 3.3919 -15.3465 5.7511 46 1 2.1001 -14.1830 6.1360 47 1 0.6487 -7.9877 1.9124 48 1 2.4492 -7.7463 1.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479280478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:09 Heat of formation + Delta-G solvation = -136.120428 kcal Electronic energy + Delta-G solvation = -28645.180231 eV Core-core repulsion = 24315.056342 eV Total energy + Delta-G solvation = -4330.123889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97100 -39.80359 -38.98143 -38.04394 -36.57336 -35.15624 -34.08053 -33.31901 -32.28850 -31.20228 -29.24596 -27.85855 -26.37451 -25.79453 -25.37316 -24.02203 -22.48659 -21.62180 -20.95946 -19.75694 -19.10721 -18.10551 -17.87087 -17.57301 -17.06680 -16.64628 -16.24254 -16.02188 -15.96921 -15.59970 -15.28601 -15.08501 -14.90305 -14.50594 -14.31765 -14.02021 -13.88937 -13.60565 -13.49419 -13.35219 -12.86814 -12.56216 -12.44957 -12.29003 -12.19428 -11.65384 -11.54798 -11.52234 -11.41471 -11.19427 -11.06177 -10.97307 -10.75510 -10.40000 -10.38546 -10.21475 -10.11244 -9.76753 -9.51001 -9.42337 -8.44483 -8.07325 -7.95889 -6.41863 -3.82624 2.15560 2.32970 3.06015 3.17902 3.26584 3.32841 3.39927 3.90525 3.91110 4.09434 4.16452 4.28995 4.30136 4.35135 4.37813 4.50464 4.52921 4.62800 4.71503 4.72592 4.82526 4.95767 4.98426 5.14456 5.17236 5.19459 5.22655 5.27170 5.44627 5.58259 5.64385 5.75041 5.79937 5.89561 5.92676 6.00314 6.15402 6.21745 6.29128 6.33995 6.36688 7.05656 7.28463 7.55195 7.66626 7.80114 8.06496 8.61357 9.17964 9.54380 10.05959 10.75880 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.001424 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.486408 B =19656.494795 C =19725.679567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.059 3.941 15 H 0.071 0.929 16 C -0.131 4.131 17 C -0.126 4.126 18 H 0.095 0.905 19 C 0.132 3.868 20 N -0.723 5.723 21 C 0.520 3.480 22 O -0.513 6.513 23 C 0.037 3.963 24 H 0.096 0.904 25 C 0.038 3.962 26 O -0.373 6.373 27 C 0.020 3.980 28 C 0.023 3.977 29 O -0.350 6.350 30 C -0.121 4.121 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.351 0.649 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -30.533 5.958 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.051 4.051 15 H 0.089 0.911 16 C -0.170 4.170 17 C -0.145 4.145 18 H 0.113 0.887 19 C 0.009 3.991 20 N -0.377 5.377 21 C 0.304 3.696 22 O -0.387 6.387 23 C -0.025 4.025 24 H 0.114 0.886 25 C -0.040 4.040 26 O -0.291 6.291 27 C -0.057 4.057 28 C -0.054 4.054 29 O -0.268 6.268 30 C -0.160 4.160 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.497 -30.419 6.474 31.201 hybrid contribution -1.144 0.912 -0.725 1.632 sum -3.641 -29.508 5.749 30.282 Atomic orbital electron populations 1.69611 1.05940 1.28137 1.50675 1.25256 0.95631 0.99712 0.97319 0.85856 0.79266 0.80794 0.78367 1.20430 1.20926 1.19399 1.19714 0.93394 0.82265 1.47560 0.87920 1.41868 1.09180 1.04622 1.64409 1.19844 0.88405 0.84762 0.84439 1.90524 1.13778 1.87076 1.55360 1.21731 0.94426 0.91073 1.01030 1.60230 1.18355 0.99471 1.50815 1.22980 0.96625 0.88540 0.97005 0.91082 1.23197 1.01300 0.95157 0.97326 1.22659 0.98796 0.94675 0.98364 0.88700 1.21449 0.95289 0.91330 0.90994 1.45916 1.12760 1.35893 1.43154 1.19893 0.87400 0.80874 0.81472 1.90763 1.14866 1.69218 1.63843 1.22595 0.90751 0.93129 0.96022 0.88638 1.23143 0.97085 0.92117 0.91624 1.88130 1.32439 1.50871 1.57700 1.23339 0.91365 0.93215 0.97743 1.23369 0.98383 0.92063 0.91604 1.88246 1.30543 1.50596 1.57432 1.23207 1.02736 0.93273 0.96743 0.91894 0.77484 0.93926 0.89695 0.82891 0.88754 0.91222 0.90638 0.91216 0.76454 0.87057 0.91305 0.91717 0.87268 0.87028 0.91678 0.91776 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 11 O -0.58 -15.90 15.78 5.55 0.09 -15.82 16 12 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 13 N -0.66 -10.21 6.18 -107.13 -0.66 -10.88 16 14 C 0.06 0.66 4.14 -66.90 -0.28 0.38 16 15 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 16 C -0.13 -1.17 7.21 -25.92 -0.19 -1.36 16 17 C -0.13 -0.93 3.75 -89.81 -0.34 -1.26 16 18 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 19 C 0.13 1.11 5.51 -4.04 -0.02 1.08 16 20 N -0.72 -5.18 5.52 -60.29 -0.33 -5.52 16 21 C 0.52 5.19 7.18 -10.98 -0.08 5.11 16 22 O -0.51 -7.63 16.51 -14.26 -0.24 -7.86 16 23 C 0.04 0.29 3.26 -27.80 -0.09 0.20 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 C 0.04 0.23 6.29 37.23 0.23 0.46 16 26 O -0.37 -2.63 10.85 -48.80 -0.53 -3.16 16 27 C 0.02 0.10 7.05 37.23 0.26 0.37 16 28 C 0.02 0.13 7.05 37.23 0.26 0.40 16 29 O -0.35 -3.45 10.03 -62.51 -0.63 -4.07 16 30 C -0.12 -1.18 7.43 -25.92 -0.19 -1.37 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 33 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.35 5.67 8.25 -39.30 -0.32 5.34 16 36 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.40 1.67 8.38 -40.82 -0.34 1.33 16 41 H 0.11 0.39 8.05 -51.93 -0.42 -0.03 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -35.99 399.41 -9.06 -45.04 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.64 Total: 11.23 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.78 Total: 7.10 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.33 Total: -54.54 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.30 Total: -30.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.99 -9.06 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479280478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.076 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds