Wall clock time and date at job start Sat Apr 11 2020 06:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48502 * 109.47277 * 269.99776 * 3 2 1 5 5 H 1.48501 * 109.47262 * 29.99714 * 3 2 1 6 6 H 1.48499 * 109.47372 * 150.00339 * 3 2 1 7 7 C 1.38950 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99928 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99962 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99621 * 180.02562 * 13 12 10 15 15 H 1.08991 * 112.85035 * 23.80613 * 14 13 12 16 16 C 1.53785 * 113.61112 * 155.00755 * 14 13 12 17 17 C 1.53774 * 87.08051 * 139.97879 * 16 14 13 18 18 H 1.09007 * 113.61625 * 89.20134 * 17 16 14 19 19 C 1.53002 * 113.61407 * 220.01556 * 17 16 14 20 20 N 1.46498 * 109.47335 * 185.00189 * 19 17 16 21 21 C 1.34772 * 120.00215 * 179.97438 * 20 19 17 22 22 O 1.21282 * 120.00076 * 359.97438 * 21 20 19 23 23 C 1.50705 * 120.00263 * 179.97438 * 21 20 19 24 24 H 1.08991 * 109.57747 * 304.83937 * 23 21 20 25 25 C 1.53146 * 109.52247 * 64.99872 * 23 21 20 26 26 O 1.43073 * 109.14937 * 175.21481 * 25 23 21 27 27 C 1.43076 * 113.59578 * 302.04912 * 26 25 23 28 28 C 1.53146 * 109.14935 * 57.94883 * 27 26 25 29 29 O 1.43070 * 109.52499 * 184.67235 * 23 21 20 30 30 C 1.53777 * 87.08289 * 334.56279 * 17 16 14 31 31 H 0.97002 * 120.00080 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00583 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47002 * 60.00204 * 12 10 9 34 34 H 1.08992 * 109.47076 * 300.00205 * 12 10 9 35 35 H 1.00894 * 111.00748 * 303.95702 * 13 12 10 36 36 H 1.09000 * 113.61752 * 25.43080 * 16 14 13 37 37 H 1.08998 * 113.60948 * 254.52674 * 16 14 13 38 38 H 1.08993 * 109.47531 * 65.00065 * 19 17 16 39 39 H 1.09006 * 109.47185 * 305.00013 * 19 17 16 40 40 H 0.96998 * 120.00095 * 0.02562 * 20 19 17 41 41 H 1.08996 * 109.52874 * 295.11888 * 25 23 21 42 42 H 1.09003 * 109.52413 * 55.31579 * 25 23 21 43 43 H 1.09007 * 109.52119 * 298.05112 * 27 26 25 44 44 H 1.08994 * 109.58181 * 177.88650 * 27 26 25 45 45 H 1.09006 * 109.51952 * 184.78461 * 28 27 26 46 46 H 1.09001 * 109.57291 * 64.62747 * 28 27 26 47 47 H 1.09001 * 113.61036 * 139.98095 * 30 17 16 48 48 H 1.08996 * 113.61462 * 270.88139 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4981 -7.2708 -0.0008 15 1 0.4884 -7.2046 -0.4057 16 6 2.3269 -8.4210 -0.5968 17 6 1.7629 -9.3054 0.5276 18 1 0.8257 -9.7976 0.2676 19 6 2.7922 -10.2660 1.1265 20 7 2.1346 -11.1421 2.0992 21 6 2.8500 -12.0760 2.7568 22 8 4.0383 -12.1913 2.5430 23 6 2.1736 -12.9769 3.7578 24 1 1.6621 -12.3720 4.5064 25 6 1.1573 -13.8688 3.0388 26 8 0.6012 -14.7962 3.9756 27 6 1.5801 -15.6210 4.6148 28 6 2.5965 -14.7290 5.3337 29 8 3.1526 -13.8016 4.3969 30 6 1.5776 -8.0147 1.3428 31 1 -0.4850 0.8401 0.0004 32 1 0.3534 -2.3907 -0.0005 33 1 0.6168 -4.9209 -0.8897 34 1 0.6175 -4.9205 0.8902 35 1 2.8328 -5.9125 -0.7824 36 1 3.4034 -8.2636 -0.5302 37 1 2.0029 -8.7218 -1.5931 38 1 3.5761 -9.6949 1.6238 39 1 3.2310 -10.8698 0.3321 40 1 1.1840 -11.0507 2.2694 41 1 0.3618 -13.2515 2.6214 42 1 1.6546 -14.4148 2.2372 43 1 2.0916 -16.2259 3.8661 44 1 1.0917 -16.2733 5.3386 45 1 3.3919 -15.3465 5.7511 46 1 2.1001 -14.1830 6.1360 47 1 0.6487 -7.9877 1.9124 48 1 2.4492 -7.7463 1.9397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479280478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:08 Heat of formation + Delta-G solvation = -165.612552 kcal Electronic energy + Delta-G solvation = -28646.459105 eV Core-core repulsion = 24315.056342 eV Total energy + Delta-G solvation = -4331.402763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.60009 -40.60459 -40.05432 -39.54223 -37.12344 -36.23935 -35.82705 -34.54596 -33.24969 -32.82799 -29.90812 -28.79148 -27.66145 -26.59470 -26.08835 -25.56127 -23.04940 -22.43005 -21.65846 -21.17338 -20.33996 -19.86965 -18.74173 -18.18772 -17.76752 -17.61368 -17.09407 -16.88695 -16.75854 -16.58999 -16.36266 -16.25397 -15.95080 -15.71957 -15.61904 -15.20251 -14.99504 -14.66000 -14.43601 -14.13460 -13.99251 -13.54237 -13.49372 -13.27843 -13.26589 -13.00562 -12.77057 -12.64622 -12.44050 -12.39413 -12.13086 -11.97474 -11.79471 -11.68874 -11.54256 -11.50368 -11.14185 -10.86792 -10.33935 -10.30317 -10.14439 -10.01763 -9.27053 -8.47115 -5.95871 1.37723 1.40618 1.41667 1.54373 1.71181 2.05426 2.29317 2.63204 2.87256 2.99106 3.20318 3.41005 3.48650 3.58376 3.64185 3.79959 3.84061 3.93882 3.94983 4.01275 4.11829 4.23837 4.27183 4.37279 4.45951 4.47410 4.50637 4.53354 4.61193 4.74147 4.77358 4.79286 4.86427 4.94358 4.99843 5.14952 5.25862 5.36342 5.40497 5.53374 5.83865 5.86934 5.94827 6.21995 6.45306 6.45827 6.60380 7.12308 7.12502 7.56232 8.11977 8.70196 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.001424 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.486408 B =19656.494795 C =19725.679567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.067 3.933 13 N -0.675 5.675 14 C 0.051 3.949 15 H 0.091 0.909 16 C -0.129 4.129 17 C -0.100 4.100 18 H 0.129 0.871 19 C 0.135 3.865 20 N -0.704 5.704 21 C 0.517 3.483 22 O -0.571 6.571 23 C 0.038 3.962 24 H 0.115 0.885 25 C 0.042 3.958 26 O -0.384 6.384 27 C 0.018 3.982 28 C 0.018 3.982 29 O -0.387 6.387 30 C -0.123 4.123 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.343 0.657 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.420 0.580 41 H 0.140 0.860 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -31.530 6.020 32.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.058 4.058 15 H 0.108 0.892 16 C -0.168 4.168 17 C -0.119 4.119 18 H 0.147 0.853 19 C 0.011 3.989 20 N -0.358 5.358 21 C 0.303 3.697 22 O -0.450 6.450 23 C -0.023 4.023 24 H 0.132 0.868 25 C -0.035 4.035 26 O -0.303 6.303 27 C -0.058 4.058 28 C -0.058 4.058 29 O -0.307 6.307 30 C -0.161 4.161 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.258 0.742 41 H 0.158 0.842 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.142 0.858 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.027 -31.431 6.543 32.496 hybrid contribution -0.367 1.173 -0.717 1.423 sum -5.395 -30.258 5.826 31.282 Atomic orbital electron populations 1.69664 1.06770 1.29303 1.50253 1.26015 0.96546 1.02329 0.96212 0.84939 0.77851 0.76933 0.78675 1.19553 1.19445 1.19973 1.19669 0.92692 0.84159 1.50083 0.90480 1.41934 1.09327 1.04704 1.65051 1.20998 0.88286 0.86325 0.82105 1.90491 1.16027 1.88019 1.56708 1.21584 0.94067 0.88041 1.02899 1.60253 1.18774 1.00810 1.50885 1.23216 0.97462 0.86690 0.98426 0.89168 1.23169 1.00229 0.94569 0.98811 1.22552 0.99456 0.93344 0.96532 0.85342 1.21328 0.95295 0.91362 0.90897 1.45756 1.13512 1.34557 1.41992 1.20400 0.86801 0.81057 0.81456 1.90735 1.17408 1.70992 1.65836 1.22683 0.90473 0.93208 0.95917 0.86778 1.23214 0.97350 0.91998 0.90982 1.88113 1.33162 1.51082 1.57911 1.23482 0.91185 0.93063 0.98086 1.23591 0.99109 0.91868 0.91246 1.88195 1.32422 1.51599 1.58439 1.23167 1.02390 0.94302 0.96269 0.91269 0.76925 0.91411 0.88021 0.83722 0.90386 0.89409 0.93192 0.91519 0.74239 0.84182 0.92197 0.92006 0.84877 0.85775 0.90775 0.90154 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.47 5.29 -306.98 -1.62 -31.10 16 10 C 0.44 20.79 7.82 87.66 0.69 21.48 16 11 O -0.63 -35.20 15.78 -3.06 -0.05 -35.25 16 12 C 0.07 2.22 6.01 85.56 0.51 2.74 16 13 N -0.67 -20.54 6.18 -492.84 -3.05 -23.59 16 14 C 0.05 1.03 4.14 45.44 0.19 1.22 16 15 H 0.09 1.52 7.86 -2.39 -0.02 1.51 16 16 C -0.13 -2.07 7.21 31.12 0.22 -1.85 16 17 C -0.10 -1.21 3.75 -10.27 -0.04 -1.25 16 18 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 19 C 0.13 2.13 5.51 86.38 0.48 2.61 16 20 N -0.70 -8.97 5.52 -463.06 -2.56 -11.53 16 21 C 0.52 10.16 7.18 87.66 0.63 10.79 16 22 O -0.57 -17.68 16.51 15.91 0.26 -17.41 16 23 C 0.04 0.56 3.26 29.90 0.10 0.66 16 24 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 25 C 0.04 0.43 6.29 72.03 0.45 0.88 16 26 O -0.38 -4.62 10.85 -136.00 -1.48 -6.09 16 27 C 0.02 0.16 7.05 72.03 0.51 0.67 16 28 C 0.02 0.19 7.05 72.03 0.51 0.70 16 29 O -0.39 -7.57 10.03 -122.90 -1.23 -8.81 16 30 C -0.12 -2.15 7.43 31.12 0.23 -1.92 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 33 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.34 11.16 8.25 -89.70 -0.74 10.42 16 36 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.07 7.84 -2.39 -0.02 1.05 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.42 2.17 8.38 -92.71 -0.78 1.39 16 41 H 0.14 0.52 8.05 -2.39 -0.02 0.50 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 Total: -1.00 -81.29 399.41 -2.90 -84.19 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -1.25 Total: 35.48 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 5.76 Total: 18.13 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -6.94 Total: -115.33 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -2.49 Total: -67.56 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -81.29 -2.90 -84.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479280478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.425 kcal (2) G-P(sol) polarization free energy of solvation -81.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds