Wall clock time and date at job start Sat Apr 11 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47146 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00102 * 290.84591 * 13 12 10 15 15 C 1.54911 * 104.79522 * 213.63721 * 14 13 12 16 16 C 1.55141 * 101.65277 * 37.06450 * 15 14 13 17 17 H 1.09009 * 110.70194 * 82.73247 * 16 15 14 18 18 N 1.46502 * 110.70663 * 205.96135 * 16 15 14 19 19 C 1.34770 * 120.00424 * 268.60684 * 18 16 15 20 20 O 1.21288 * 119.99658 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00319 * 180.02562 * 19 18 16 22 22 O 1.42897 * 109.47379 * 179.97438 * 21 19 18 23 23 C 1.42897 * 114.00405 * 179.97438 * 22 21 19 24 24 H 1.09006 * 110.74878 * 32.01738 * 23 22 21 25 25 C 1.55306 * 110.85156 * 155.71072 * 23 22 21 26 26 C 1.54951 * 100.93970 * 152.32370 * 25 23 22 27 27 O 1.43637 * 105.13944 * 323.56045 * 26 25 23 28 28 C 1.43238 * 109.97461 * 24.42689 * 27 26 25 29 29 C 1.47443 * 111.00128 * 169.99945 * 13 12 10 30 30 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 33 33 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 34 34 H 1.09000 * 110.36968 * 332.46159 * 14 13 12 35 35 H 1.08994 * 110.37553 * 94.80579 * 14 13 12 36 36 H 1.09004 * 110.99124 * 278.97465 * 15 14 13 37 37 H 1.08997 * 111.02206 * 155.17354 * 15 14 13 38 38 H 0.97001 * 119.99470 * 88.60205 * 18 16 15 39 39 H 1.08996 * 109.46960 * 299.99432 * 21 19 18 40 40 H 1.08998 * 109.46941 * 59.99623 * 21 19 18 41 41 H 1.08998 * 111.13145 * 270.24929 * 25 23 22 42 42 H 1.08998 * 111.11962 * 34.41450 * 25 23 22 43 43 H 1.08997 * 110.30696 * 204.64089 * 26 25 23 44 44 H 1.09000 * 110.38746 * 82.51912 * 26 25 23 45 45 H 1.09001 * 109.83013 * 238.77655 * 28 27 26 46 46 H 1.08995 * 109.90919 * 117.84198 * 28 27 26 47 47 H 1.09004 * 109.89213 * 242.66305 * 29 13 12 48 48 H 1.09000 * 109.88799 * 3.85240 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 2.9160 -6.0636 -1.2872 15 6 3.1544 -7.5781 -1.5092 16 6 1.8430 -8.1874 -0.9472 17 1 1.0506 -8.1528 -1.6950 18 7 2.0649 -9.5610 -0.4887 19 6 1.8693 -10.5931 -1.3329 20 8 1.5091 -10.3848 -2.4722 21 6 2.0970 -12.0061 -0.8611 22 8 1.8251 -12.9149 -1.9299 23 6 2.0121 -14.2892 -1.5861 24 1 1.7770 -14.4599 -0.5355 25 6 1.1618 -15.2092 -2.5039 26 6 2.0079 -16.5072 -2.4844 27 8 3.3741 -16.0640 -2.4616 28 6 3.4515 -14.7452 -1.9080 29 6 1.5115 -7.2619 0.2423 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 0.0024 32 1 0.6175 -4.9205 0.8924 33 1 0.6169 -4.9209 -0.8876 34 1 2.3028 -5.6543 -2.0900 35 1 3.8671 -5.5345 -1.2275 36 1 4.0195 -7.9242 -0.9437 37 1 3.2673 -7.8048 -2.5694 38 1 2.3526 -9.7275 0.4225 39 1 3.1329 -12.1200 -0.5417 40 1 1.4329 -12.2211 -0.0240 41 1 0.1717 -15.3793 -2.0810 42 1 1.0915 -14.8014 -3.5123 43 1 1.8164 -17.0971 -3.3807 44 1 1.7851 -17.0924 -1.5922 45 1 3.9013 -14.0660 -2.6322 46 1 4.0474 -14.7602 -0.9955 47 1 1.8707 -7.7074 1.1700 48 1 0.4348 -7.1011 0.2982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479953281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:19 Heat of formation + Delta-G solvation = -144.093448 kcal Electronic energy + Delta-G solvation = -28898.237584 eV Core-core repulsion = 24567.767959 eV Total energy + Delta-G solvation = -4330.469625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50396 -39.96777 -38.94810 -37.71343 -37.20500 -34.59400 -33.81438 -32.08555 -31.41523 -30.95562 -29.61346 -28.90671 -27.72898 -26.24450 -24.18138 -23.07395 -22.09514 -21.55747 -21.05806 -20.75909 -19.21339 -18.00059 -17.91954 -17.78404 -16.94995 -16.71178 -16.22280 -16.00176 -15.67252 -15.52394 -15.26849 -14.62764 -14.48275 -14.42957 -14.20135 -13.86106 -13.78924 -13.60598 -13.06118 -12.98737 -12.92664 -12.86695 -12.43218 -12.22946 -12.03923 -11.94794 -11.74026 -11.54356 -11.48258 -11.33786 -11.13415 -10.98658 -10.75397 -10.38885 -10.26719 -10.21161 -10.10014 -10.04705 -9.49270 -9.30530 -8.47304 -7.97947 -7.91449 -6.40848 -3.81582 2.28006 2.30292 3.18428 3.21930 3.27026 3.32822 3.49834 3.82077 3.91472 4.00257 4.21243 4.27846 4.29201 4.37460 4.48725 4.55920 4.58876 4.66745 4.70850 4.76113 4.92387 5.05403 5.14803 5.15366 5.18392 5.25602 5.33385 5.33662 5.36648 5.45432 5.57118 5.69691 5.78307 5.84683 5.94520 6.07073 6.25056 6.28888 6.39064 6.43771 6.48187 7.13051 7.17024 7.22084 7.56005 7.90649 8.07092 8.62854 9.19205 9.55505 10.07414 10.76965 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.049671 B = 0.001457 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.572974 B =19216.877544 C =19408.313778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.039 3.961 13 N -0.501 5.501 14 C 0.053 3.947 15 C -0.140 4.140 16 C 0.124 3.876 17 H 0.098 0.902 18 N -0.717 5.717 19 C 0.514 3.486 20 O -0.517 6.517 21 C 0.041 3.959 22 O -0.344 6.344 23 C 0.053 3.947 24 H 0.082 0.918 25 C -0.152 4.152 26 C 0.051 3.949 27 O -0.379 6.379 28 C 0.027 3.973 29 C 0.037 3.963 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -30.376 0.513 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.210 1.210 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.093 4.093 13 N -0.225 5.225 14 C -0.074 4.074 15 C -0.179 4.179 16 C 0.018 3.982 17 H 0.116 0.884 18 N -0.370 5.370 19 C 0.298 3.702 20 O -0.391 6.391 21 C -0.039 4.039 22 O -0.262 6.262 23 C -0.005 4.005 24 H 0.100 0.900 25 C -0.190 4.190 26 C -0.025 4.025 27 O -0.298 6.298 28 C -0.051 4.051 29 C -0.091 4.091 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.640 -30.010 -0.193 30.017 hybrid contribution -0.857 0.774 0.291 1.191 sum -0.217 -29.235 0.099 29.236 Atomic orbital electron populations 1.69613 1.05932 1.28113 1.50735 1.25252 0.95620 0.99682 0.97375 0.85864 0.79227 0.80854 0.78374 1.20420 1.19440 1.20963 1.19696 0.93354 0.82216 1.47538 0.87927 1.41856 1.09158 1.04576 1.64655 1.19699 0.88410 0.84472 0.84449 1.90507 1.13644 1.86981 1.54951 1.22151 0.93942 0.91595 1.01591 1.63292 1.25343 1.00715 1.33198 1.23017 1.00796 0.94464 0.89132 1.23158 0.97337 0.95795 1.01633 1.22305 0.98727 0.79859 0.97270 0.88400 1.45834 1.70052 1.05753 1.15397 1.20171 0.77781 0.86198 0.86013 1.90763 1.44503 1.85330 1.18492 1.22314 1.02017 0.88610 0.90953 1.88096 1.89060 1.13971 1.35043 1.23779 0.94868 0.82392 0.99475 0.89969 1.23319 0.99378 0.94296 1.02000 1.23367 0.80997 0.95769 1.02375 1.88447 1.26171 1.31030 1.84174 1.23692 0.96995 0.85009 0.99362 1.23086 0.98325 0.90219 0.97516 0.91909 0.77529 0.89309 0.93146 0.93618 0.88385 0.90350 0.90530 0.76296 0.89929 0.89875 0.89029 0.88794 0.89041 0.91765 0.89898 0.90959 0.90095 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.26 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.39 7.58 -10.98 -0.08 10.31 16 11 O -0.58 -15.42 14.61 5.55 0.08 -15.34 16 12 C 0.04 0.68 5.05 -4.98 -0.03 0.65 16 13 N -0.50 -7.96 4.86 -232.69 -1.13 -9.09 16 14 C 0.05 0.84 5.74 -2.30 -0.01 0.83 16 15 C -0.14 -1.73 6.76 -24.59 -0.17 -1.90 16 16 C 0.12 1.37 3.31 -66.11 -0.22 1.15 16 17 H 0.10 1.24 7.55 -51.92 -0.39 0.85 16 18 N -0.72 -6.05 5.18 -52.04 -0.27 -6.31 16 19 C 0.51 5.27 7.91 -10.99 -0.09 5.18 16 20 O -0.52 -7.90 16.15 -14.36 -0.23 -8.13 16 21 C 0.04 0.27 6.29 36.00 0.23 0.50 16 22 O -0.34 -3.16 9.61 -55.14 -0.53 -3.69 16 23 C 0.05 0.34 3.45 -24.78 -0.09 0.25 16 24 H 0.08 0.33 7.89 -51.93 -0.41 -0.08 16 25 C -0.15 -0.87 6.89 -24.48 -0.17 -1.04 16 26 C 0.05 0.28 7.78 38.19 0.30 0.58 16 27 O -0.38 -3.23 11.36 -35.23 -0.40 -3.63 16 28 C 0.03 0.18 7.58 37.88 0.29 0.47 16 29 C 0.04 0.43 6.61 -2.84 -0.02 0.41 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 32 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 33 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 35 H 0.10 1.79 7.37 -51.93 -0.38 1.40 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 2.12 8.37 -40.82 -0.34 1.78 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 48 H 0.06 0.67 7.55 -51.93 -0.39 0.28 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -35.77 395.72 -8.77 -44.54 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.59 Total: 8.34 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.30 Total: 9.44 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.73 Total: -53.51 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.08 Total: -30.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.77 -8.77 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479953281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.557 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds