Wall clock time and date at job start Sat Apr 11 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00521 * 2 1 4 4 H 1.48494 * 109.47132 * 239.99572 * 3 2 1 5 5 H 1.48495 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47083 * 119.99774 * 3 2 1 7 7 C 1.38955 * 119.99332 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99530 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99925 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46918 * 180.02562 * 12 10 9 14 14 C 1.48565 * 110.99606 * 290.12115 * 13 12 10 15 15 C 1.54384 * 104.59253 * 200.96025 * 14 13 12 16 16 C 1.54256 * 105.05850 * 23.85499 * 15 14 13 17 17 H 1.09007 * 110.32645 * 240.99701 * 16 15 14 18 18 N 1.46503 * 110.32440 * 118.89550 * 16 15 14 19 19 C 1.34778 * 120.00051 * 86.44751 * 18 16 15 20 20 O 1.21283 * 120.00143 * 0.02562 * 19 18 16 21 21 C 1.50704 * 120.00198 * 180.02562 * 19 18 16 22 22 O 1.42901 * 109.47055 * 180.02562 * 21 19 18 23 23 C 1.42901 * 113.99889 * 179.97438 * 22 21 19 24 24 H 1.08999 * 110.82649 * 26.35583 * 23 22 21 25 25 C 1.54807 * 110.90460 * 149.99804 * 23 22 21 26 26 C 1.54105 * 104.18504 * 139.08302 * 25 23 22 27 27 O 1.43746 * 107.42259 * 1.95340 * 26 25 23 28 28 C 1.44586 * 106.86832 * 333.67423 * 27 26 25 29 29 C 1.48560 * 111.00151 * 174.70813 * 13 12 10 30 30 H 0.97002 * 119.99096 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99283 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.47409 * 59.99402 * 12 10 9 33 33 H 1.08999 * 109.47217 * 299.99532 * 12 10 9 34 34 H 1.09004 * 110.41161 * 82.18864 * 14 13 12 35 35 H 1.08992 * 110.51415 * 319.79218 * 14 13 12 36 36 H 1.09003 * 110.32344 * 264.95899 * 15 14 13 37 37 H 1.09000 * 110.40780 * 142.79862 * 15 14 13 38 38 H 0.96996 * 120.00077 * 266.45180 * 18 16 15 39 39 H 1.09001 * 109.46674 * 60.00515 * 21 19 18 40 40 H 1.09000 * 109.47074 * 300.00392 * 21 19 18 41 41 H 1.08996 * 110.48875 * 20.40570 * 25 23 22 42 42 H 1.09003 * 110.60294 * 257.81062 * 25 23 22 43 43 H 1.09002 * 109.88076 * 121.45430 * 26 25 23 44 44 H 1.08996 * 109.87584 * 242.45546 * 26 25 23 45 45 H 1.08999 * 110.50225 * 281.37988 * 28 27 26 46 46 H 1.08988 * 110.64114 * 158.44257 * 28 27 26 47 47 H 1.09004 * 110.41391 * 40.25481 * 29 13 12 48 48 H 1.09002 * 110.41022 * 277.82086 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2834 2.7464 0.0006 6 1 3.1020 1.6962 1.2126 7 6 2.0087 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0001 12 6 1.2434 -4.8630 0.0000 13 7 2.1979 -5.9796 0.0007 14 6 2.9074 -6.0742 -1.3011 15 6 3.4272 -7.5269 -1.3561 16 6 2.4973 -8.3211 -0.4160 17 1 3.0701 -8.7603 0.4009 18 7 1.7924 -9.3668 -1.1616 19 6 2.3678 -10.5727 -1.3384 20 8 3.4689 -10.7923 -0.8799 21 6 1.6430 -11.6482 -2.1059 22 8 2.4520 -12.8252 -2.1559 23 6 1.8536 -13.9121 -2.8648 24 1 1.1445 -13.5467 -3.6076 25 6 2.9342 -14.8033 -3.5240 26 6 2.4308 -16.2412 -3.2920 27 8 1.1668 -16.1505 -2.6135 28 6 1.1696 -14.9008 -1.8865 29 6 1.4940 -7.2817 0.1281 30 1 -0.4849 0.8401 0.0004 31 1 0.3532 -2.3906 0.0005 32 1 0.6170 -4.9205 -0.8902 33 1 0.6164 -4.9209 0.8897 34 1 3.7400 -5.3712 -1.3323 35 1 2.2200 -5.8849 -2.1255 36 1 4.4562 -7.5746 -0.9998 37 1 3.3606 -7.9161 -2.3721 38 1 0.9117 -9.1913 -1.5281 39 1 1.4445 -11.3001 -3.1196 40 1 0.7002 -11.8767 -1.6089 41 1 3.8992 -14.6541 -3.0398 42 1 3.0070 -14.5921 -4.5909 43 1 2.3025 -16.7479 -4.2486 44 1 3.1439 -16.7886 -2.6756 45 1 1.7492 -14.9946 -0.9681 46 1 0.1509 -14.5812 -1.6677 47 1 0.5836 -7.2820 -0.4715 48 1 1.2620 -7.4878 1.1730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479953283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:25 Heat of formation + Delta-G solvation = -172.598567 kcal Electronic energy + Delta-G solvation = -28907.665736 eV Core-core repulsion = 24575.960036 eV Total energy + Delta-G solvation = -4331.705700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.28639 -40.63521 -40.20218 -39.05004 -37.92647 -36.01033 -35.38176 -33.30488 -32.63913 -32.18042 -30.18671 -29.63655 -28.70894 -27.53339 -25.90235 -23.75662 -22.73316 -22.33558 -22.17793 -21.47030 -20.85185 -19.85338 -18.48780 -18.45053 -17.82779 -17.40445 -17.31552 -17.00056 -16.68650 -16.43942 -16.23929 -16.08617 -15.92852 -15.66559 -15.32588 -14.96188 -14.79505 -14.60995 -14.30543 -14.17580 -13.67885 -13.58461 -13.44413 -13.25926 -13.19548 -12.95076 -12.83854 -12.57339 -12.43566 -12.40606 -12.38930 -12.36140 -12.11646 -11.78626 -11.72139 -11.46900 -10.91007 -10.89203 -10.53992 -10.33037 -10.14710 -9.99129 -9.38220 -8.45429 -5.93596 1.40140 1.42209 1.52560 1.55351 1.67094 2.08051 2.29579 2.63467 2.91989 3.18806 3.21595 3.37176 3.47260 3.49852 3.73607 3.81218 3.81689 3.94688 4.05406 4.18368 4.20586 4.26628 4.28329 4.30169 4.32851 4.37031 4.46754 4.55006 4.66953 4.67979 4.72413 4.79859 4.80903 4.92237 4.96594 4.99871 5.05012 5.14376 5.38463 5.42166 5.70428 5.82800 5.91696 6.06667 6.08683 6.53702 6.62868 7.15025 7.22687 7.58734 8.15453 8.71666 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.001466 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.796376 B =19097.750523 C =19312.706239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.049 3.951 13 N -0.511 5.511 14 C 0.041 3.959 15 C -0.124 4.124 16 C 0.152 3.848 17 H 0.081 0.919 18 N -0.704 5.704 19 C 0.510 3.490 20 O -0.573 6.573 21 C 0.043 3.957 22 O -0.378 6.378 23 C 0.054 3.946 24 H 0.108 0.892 25 C -0.157 4.157 26 C 0.044 3.956 27 O -0.394 6.394 28 C 0.023 3.977 29 C 0.035 3.965 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.420 0.580 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 -28.694 -8.702 30.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.094 0.906 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.082 4.082 13 N -0.236 5.236 14 C -0.087 4.087 15 C -0.163 4.163 16 C 0.046 3.954 17 H 0.099 0.901 18 N -0.359 5.359 19 C 0.297 3.703 20 O -0.451 6.451 21 C -0.036 4.036 22 O -0.297 6.297 23 C -0.004 4.004 24 H 0.126 0.874 25 C -0.195 4.195 26 C -0.032 4.032 27 O -0.314 6.314 28 C -0.054 4.054 29 C -0.093 4.093 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.258 0.742 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.133 0.867 47 H 0.099 0.901 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.241 -28.768 -7.846 30.119 hybrid contribution -0.658 1.316 -0.647 1.607 sum -4.899 -27.452 -8.493 29.150 Atomic orbital electron populations 1.69657 1.06702 1.29276 1.50362 1.25972 0.96523 1.02199 0.96333 0.85031 0.77803 0.76916 0.78844 1.19812 1.19405 1.19934 1.19602 0.92634 0.84130 1.50003 0.90553 1.41902 1.09291 1.04599 1.65373 1.20823 0.88297 0.86037 0.82157 1.90493 1.15918 1.87879 1.56138 1.21925 0.93718 0.88496 1.04077 1.65045 1.24337 1.01640 1.32539 1.23026 0.98714 0.96968 0.89976 1.22644 0.99631 0.93588 1.00425 1.21414 0.93092 0.87166 0.93709 0.90097 1.45818 1.22267 1.11470 1.56343 1.20912 0.85969 0.83522 0.79899 1.90749 1.22311 1.81441 1.50628 1.22492 0.94330 0.84661 1.02095 1.88043 1.43826 1.21637 1.76167 1.23872 0.95588 0.87032 0.93874 0.87375 1.23026 0.99540 0.94024 1.02922 1.23269 0.85250 0.96356 0.98331 1.88924 1.36780 1.39772 1.65923 1.24144 1.02878 0.83293 0.95069 1.23390 0.95654 0.87113 1.03177 0.91328 0.76931 0.90388 0.86766 0.92416 0.93096 0.92170 0.89846 0.74198 0.86768 0.86672 0.90484 0.87971 0.87772 0.91995 0.92275 0.86722 0.90081 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -28.94 5.29 -306.98 -1.62 -30.57 16 10 C 0.44 20.56 7.59 87.66 0.66 21.22 16 11 O -0.62 -34.25 14.41 -3.05 -0.04 -34.29 16 12 C 0.05 1.58 5.30 85.56 0.45 2.04 16 13 N -0.51 -15.64 5.06 -886.04 -4.49 -20.12 16 14 C 0.04 1.26 5.80 86.45 0.50 1.76 16 15 C -0.12 -3.12 6.78 31.49 0.21 -2.91 16 16 C 0.15 3.19 3.36 45.88 0.15 3.35 16 17 H 0.08 2.09 7.64 -2.38 -0.02 2.07 16 18 N -0.70 -9.87 5.04 -438.29 -2.21 -12.08 16 19 C 0.51 9.49 7.90 87.66 0.69 10.18 16 20 O -0.57 -17.50 16.20 16.00 0.26 -17.24 16 21 C 0.04 0.44 6.25 71.24 0.45 0.88 16 22 O -0.38 -6.26 9.64 -129.94 -1.25 -7.51 16 23 C 0.05 0.59 3.63 31.89 0.12 0.70 16 24 H 0.11 0.60 7.83 -2.39 -0.02 0.59 16 25 C -0.16 -1.66 6.78 31.58 0.21 -1.44 16 26 C 0.04 0.47 7.69 72.36 0.56 1.03 16 27 O -0.39 -5.99 11.54 -148.98 -1.72 -7.71 16 28 C 0.02 0.27 7.45 72.66 0.54 0.82 16 29 C 0.03 0.68 6.19 86.45 0.54 1.22 16 30 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 32 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 33 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 34 H 0.06 2.28 6.91 -2.38 -0.02 2.26 16 35 H 0.05 1.40 7.83 -2.39 -0.02 1.38 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.85 7.95 -2.39 -0.02 1.83 16 38 H 0.42 2.54 8.34 -92.71 -0.77 1.77 16 39 H 0.11 0.45 8.12 -2.39 -0.02 0.43 16 40 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 42 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 1.09 7.59 -2.38 -0.02 1.08 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -80.94 395.80 -2.91 -83.86 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.52 Total: 28.74 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.37 Total: 20.69 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -8.04 Total: -111.33 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -2.76 Total: -66.75 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -80.94 -2.91 -83.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479953283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.741 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds