Wall clock time and date at job start Sat Apr 11 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99751 * 2 1 4 4 H 1.48496 * 109.46901 * 270.00407 * 3 2 1 5 5 H 1.48501 * 109.47003 * 30.00504 * 3 2 1 6 6 H 1.48498 * 109.46828 * 150.00127 * 3 2 1 7 7 C 1.38949 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99749 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99480 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00242 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99944 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47484 * 180.02562 * 12 10 9 14 14 C 1.46854 * 110.99688 * 293.95422 * 13 12 10 15 15 C 1.53033 * 109.52214 * 185.83826 * 14 13 12 16 16 C 1.53117 * 109.27913 * 300.81713 * 15 14 13 17 17 C 1.53124 * 109.15918 * 57.65712 * 16 15 14 18 18 H 1.09002 * 109.50351 * 62.32410 * 17 16 15 19 19 N 1.46498 * 109.50172 * 182.40529 * 17 16 15 20 20 C 1.34777 * 119.99828 * 274.64105 * 19 17 16 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 17 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 17 23 23 H 1.09001 * 109.51872 * 305.00420 * 22 20 19 24 24 C 1.53147 * 109.52226 * 65.13176 * 22 20 19 25 25 O 1.43091 * 109.14464 * 175.14897 * 24 22 20 26 26 C 1.43075 * 113.64668 * 302.15262 * 25 24 22 27 27 C 1.53148 * 109.15182 * 57.91296 * 26 25 24 28 28 O 1.43070 * 109.15097 * 304.68421 * 27 26 25 29 29 C 1.46845 * 110.99686 * 58.19850 * 13 12 10 30 30 H 0.96996 * 120.00599 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00226 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46910 * 59.99816 * 12 10 9 33 33 H 1.09001 * 109.46847 * 300.00070 * 12 10 9 34 34 H 1.08997 * 109.46108 * 65.82109 * 14 13 12 35 35 H 1.09004 * 109.46015 * 305.85706 * 14 13 12 36 36 H 1.09003 * 109.50090 * 180.87635 * 15 14 13 37 37 H 1.09000 * 109.53317 * 60.78207 * 15 14 13 38 38 H 1.08997 * 109.52711 * 297.75192 * 16 15 14 39 39 H 1.09001 * 109.57725 * 177.58739 * 16 15 14 40 40 H 0.97001 * 120.00384 * 94.92551 * 19 17 16 41 41 H 1.09001 * 109.52671 * 295.11740 * 24 22 20 42 42 H 1.08994 * 109.52292 * 55.31250 * 24 22 20 43 43 H 1.09001 * 109.52488 * 298.01712 * 26 25 24 44 44 H 1.08998 * 109.52253 * 177.81484 * 26 25 24 45 45 H 1.09000 * 109.52375 * 184.78527 * 27 26 25 46 46 H 1.08999 * 109.52060 * 64.59203 * 27 26 25 47 47 H 1.09001 * 109.49359 * 54.17059 * 29 13 12 48 48 H 1.08996 * 109.43532 * 294.20202 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0022 13 7 6.0506 -3.7553 -0.0026 14 6 5.7022 -4.4370 1.2506 15 6 6.3504 -5.8231 1.2761 16 6 5.8544 -6.6353 0.0766 17 6 6.1867 -5.8804 -1.2135 18 1 7.2679 -5.7779 -1.3069 19 7 5.6646 -6.6232 -2.3631 20 6 6.3955 -7.6121 -2.9148 21 8 7.4833 -7.8903 -2.4564 22 6 5.8612 -8.3721 -4.1014 23 1 4.8816 -8.7841 -3.8589 24 6 5.7367 -7.4275 -5.3004 25 8 5.3374 -8.1793 -6.4506 26 6 6.2353 -9.2432 -6.7808 27 6 6.3582 -10.1874 -5.5812 28 8 6.7590 -9.4360 -4.4316 29 6 5.5440 -4.4923 -1.1674 30 1 -0.4851 0.8400 0.0004 31 1 3.8648 -0.3632 -0.0014 32 1 5.9248 -1.8561 0.8872 33 1 5.9234 -1.8569 -0.8927 34 1 4.6193 -4.5412 1.3185 35 1 6.0642 -3.8511 2.0955 36 1 6.0788 -6.3348 2.1995 37 1 7.4341 -5.7196 1.2226 38 1 4.7756 -6.7727 0.1507 39 1 6.3457 -7.6082 0.0661 40 1 4.7946 -6.4007 -2.7299 41 1 4.9896 -6.6633 -5.0861 42 1 6.6993 -6.9536 -5.4922 43 1 7.2152 -8.8313 -7.0220 44 1 5.8487 -9.7929 -7.6389 45 1 7.1047 -10.9524 -5.7948 46 1 5.3950 -10.6603 -5.3898 47 1 5.7912 -3.9472 -2.0783 48 1 4.4618 -4.5956 -1.0886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481522928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:50 Heat of formation + Delta-G solvation = -171.413731 kcal Electronic energy + Delta-G solvation = -30698.519013 eV Core-core repulsion = 26366.864692 eV Total energy + Delta-G solvation = -4331.654321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74311 -41.08741 -40.11515 -38.78663 -37.12663 -36.19750 -35.60034 -33.95282 -33.70185 -32.84316 -30.74707 -29.18161 -28.81854 -26.38478 -26.16456 -24.08377 -24.01304 -22.73721 -21.59966 -21.30762 -21.06846 -20.07608 -18.82413 -18.21502 -17.74000 -17.62673 -17.21707 -16.99504 -16.76657 -16.51175 -16.26167 -16.19218 -15.76742 -15.64727 -15.43391 -15.25153 -14.99017 -14.68209 -14.56683 -14.30709 -14.18182 -14.01442 -13.60149 -13.36230 -13.28928 -13.05367 -12.68178 -12.54557 -12.43052 -12.24132 -12.00870 -11.97094 -11.86499 -11.80472 -11.66958 -11.50393 -11.35313 -11.00857 -10.88368 -10.33807 -10.21549 -10.16416 -9.03516 -8.42010 -6.01860 1.31059 1.35049 1.37404 1.44362 1.61722 1.92226 2.22534 2.60530 2.76991 2.97038 3.07228 3.15699 3.38411 3.54788 3.77748 3.81807 3.88265 3.93603 4.04102 4.10531 4.15168 4.21547 4.24903 4.44561 4.45355 4.49976 4.51857 4.54203 4.65656 4.71914 4.75821 4.77711 4.92908 4.95919 5.04744 5.12665 5.17860 5.29648 5.43531 5.53058 5.80967 5.85357 5.89990 6.00942 6.05477 6.39536 6.57630 6.88507 7.05593 7.39644 7.94724 8.75220 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002490 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.524178 B =11241.316632 C =12566.626232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.230 1.230 7 C -0.324 4.324 8 H 0.057 0.943 9 N -0.588 5.588 10 C 0.419 3.581 11 O -0.609 6.609 12 C 0.047 3.953 13 N -0.501 5.501 14 C 0.040 3.960 15 C -0.102 4.102 16 C -0.125 4.125 17 C 0.162 3.838 18 H 0.083 0.917 19 N -0.708 5.708 20 C 0.526 3.474 21 O -0.560 6.560 22 C 0.041 3.959 23 H 0.112 0.888 24 C 0.041 3.959 25 O -0.386 6.386 26 C 0.016 3.984 27 C 0.018 3.982 28 O -0.382 6.382 29 C 0.033 3.967 30 H 0.278 0.722 31 H 0.389 0.611 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.413 0.587 41 H 0.129 0.871 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.733 -12.362 -9.358 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.153 1.153 7 C -0.454 4.454 8 H 0.075 0.925 9 N -0.229 5.229 10 C 0.206 3.794 11 O -0.495 6.495 12 C -0.085 4.085 13 N -0.224 5.224 14 C -0.088 4.088 15 C -0.141 4.141 16 C -0.164 4.164 17 C 0.057 3.943 18 H 0.101 0.899 19 N -0.361 5.361 20 C 0.312 3.688 21 O -0.437 6.437 22 C -0.020 4.020 23 H 0.129 0.871 24 C -0.037 4.037 25 O -0.304 6.304 26 C -0.060 4.060 27 C -0.058 4.058 28 O -0.301 6.301 29 C -0.095 4.095 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.249 0.751 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.452 -13.154 -9.067 22.933 hybrid contribution -1.660 0.970 0.041 1.923 sum 14.792 -12.184 -9.026 21.183 Atomic orbital electron populations 1.69797 1.08158 1.29190 1.50320 1.26102 0.96407 1.02702 0.96171 0.85414 0.79574 0.76975 0.79899 1.18228 1.20398 1.15334 1.18996 0.81663 0.94761 1.49945 0.92468 1.42265 1.05830 1.07980 1.66841 1.22274 0.92238 0.83438 0.81414 1.90447 1.71495 1.31818 1.55698 1.22304 0.87335 0.92186 1.06677 1.62415 1.56120 1.01119 1.02715 1.22294 0.99013 0.95690 0.91836 1.21457 1.01059 0.93889 0.97674 1.21885 1.00743 0.98883 0.94848 1.20777 0.98925 0.90062 0.84524 0.89871 1.45863 1.22334 1.35121 1.32802 1.20270 0.84572 0.80055 0.83952 1.90706 1.22459 1.66629 1.63930 1.22597 0.95077 0.90475 0.93862 0.87098 1.23170 1.02981 0.93338 0.84167 1.88121 1.50088 1.46474 1.45746 1.23526 0.94950 0.88891 0.98611 1.23609 1.03200 0.94396 0.84566 1.88184 1.48775 1.44969 1.48161 1.22484 0.99897 0.93124 0.94031 0.91238 0.77563 0.86006 0.85972 0.94844 0.89848 0.90178 0.90476 0.92773 0.92135 0.75093 0.85270 0.91869 0.91825 0.84797 0.85270 0.90866 0.90193 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.96 21.66 0.30 -54.58 16 2 C -0.02 -0.80 5.50 84.93 0.47 -0.34 16 3 Si 0.96 37.42 27.74 68.60 1.90 39.32 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 7 C -0.32 -18.03 10.16 84.04 0.85 -17.17 16 8 H 0.06 3.80 7.39 -2.91 -0.02 3.78 16 9 N -0.59 -25.78 5.09 -306.97 -1.56 -27.34 16 10 C 0.42 16.94 7.20 87.66 0.63 17.57 16 11 O -0.61 -29.40 11.20 -3.08 -0.03 -29.43 16 12 C 0.05 1.30 5.86 85.56 0.50 1.80 16 13 N -0.50 -13.99 4.86 -900.92 -4.38 -18.36 16 14 C 0.04 1.13 5.10 86.32 0.44 1.57 16 15 C -0.10 -2.52 6.09 30.64 0.19 -2.33 16 16 C -0.12 -3.32 5.58 30.68 0.17 -3.15 16 17 C 0.16 4.23 2.62 45.05 0.12 4.35 16 18 H 0.08 2.38 7.57 -2.39 -0.02 2.36 16 19 N -0.71 -16.01 5.04 -442.27 -2.23 -18.24 16 20 C 0.53 13.35 7.15 87.66 0.63 13.97 16 21 O -0.56 -19.04 16.17 15.91 0.26 -18.78 16 22 C 0.04 0.83 3.25 29.90 0.10 0.93 16 23 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 24 C 0.04 0.70 6.30 72.03 0.45 1.15 16 25 O -0.39 -6.83 10.85 -136.01 -1.48 -8.31 16 26 C 0.02 0.21 7.05 72.03 0.51 0.72 16 27 C 0.02 0.25 7.05 72.03 0.51 0.76 16 28 O -0.38 -8.72 10.03 -122.90 -1.23 -9.95 16 29 C 0.03 0.94 4.45 86.33 0.38 1.32 16 30 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.39 14.16 5.76 -92.71 -0.53 13.63 16 32 H 0.12 2.78 8.06 -2.39 -0.02 2.76 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.03 1.22 6.00 -2.39 -0.01 1.21 16 35 H 0.08 2.12 8.06 -2.38 -0.02 2.10 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.41 7.64 8.52 -92.71 -0.79 6.85 16 41 H 0.13 1.72 8.06 -2.39 -0.02 1.70 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 48 H 0.06 2.21 5.36 -2.39 -0.01 2.19 16 Total: -1.00 -78.54 379.81 -2.89 -81.44 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.39 Total: 43.09 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.95 Total: 21.14 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -7.87 Total: -118.52 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -2.49 Total: -66.47 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.90 Total: 39.32 kcal Total: -78.54 -2.89 -81.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481522928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.977 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds