Wall clock time and date at job start Sat Apr 11 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46936 * 299.99968 * 3 2 1 6 6 H 1.48496 * 109.46762 * 60.00142 * 3 2 1 7 7 C 1.38950 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99524 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00648 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99436 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47357 * 180.02562 * 12 10 9 14 14 C 1.47957 * 111.00302 * 170.00341 * 13 12 10 15 15 C 1.53942 * 86.17857 * 222.41358 * 14 13 12 16 16 C 1.52997 * 113.73362 * 138.07610 * 15 14 13 17 17 N 1.46496 * 109.47194 * 176.89874 * 16 15 14 18 18 C 1.34777 * 120.00271 * 179.97438 * 17 16 15 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 16 21 21 O 1.42898 * 109.47171 * 180.02562 * 20 18 17 22 22 C 1.42902 * 114.00186 * 180.02562 * 21 20 18 23 23 H 1.08995 * 110.43251 * 328.90983 * 22 21 20 24 24 C 1.54808 * 110.48919 * 206.21901 * 22 21 20 25 25 C 1.55000 * 102.09288 * 220.44498 * 24 22 21 26 26 O 1.44373 * 103.49022 * 37.02186 * 25 24 22 27 27 C 1.43749 * 106.97579 * 319.94150 * 26 25 24 28 28 C 1.48183 * 111.07265 * 70.56142 * 13 12 10 29 29 H 0.96998 * 120.00147 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00060 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47349 * 60.00073 * 12 10 9 32 32 H 1.09001 * 109.47253 * 299.99607 * 12 10 9 33 33 H 1.08997 * 113.75946 * 108.09760 * 14 13 12 34 34 H 1.08999 * 113.86078 * 336.74126 * 14 13 12 35 35 H 1.09002 * 113.73345 * 269.25561 * 15 14 13 36 36 H 1.09002 * 109.47045 * 56.90000 * 16 15 14 37 37 H 1.09001 * 109.47375 * 296.89925 * 16 15 14 38 38 H 0.97005 * 120.00266 * 0.02562 * 17 16 15 39 39 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 40 40 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 41 41 H 1.09001 * 110.90376 * 338.64130 * 24 22 21 42 42 H 1.08999 * 110.91212 * 102.24045 * 24 22 21 43 43 H 1.09001 * 110.61238 * 278.51934 * 25 24 22 44 44 H 1.08994 * 110.61668 * 155.52512 * 25 24 22 45 45 H 1.09001 * 109.88002 * 267.08901 * 27 26 25 46 46 H 1.09000 * 110.00302 * 146.01106 * 27 26 25 47 47 H 1.09006 * 113.75814 * 23.24555 * 28 13 12 48 48 H 1.08999 * 113.82939 * 251.81722 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.5091 -7.2664 0.2420 15 6 2.6858 -7.6045 1.1752 16 6 2.2620 -8.2821 2.4799 17 7 3.4529 -8.6276 3.2599 18 6 3.3223 -9.2369 4.4550 19 8 2.2190 -9.4997 4.8843 20 6 4.5474 -9.5918 5.2577 21 8 4.1517 -10.2248 6.4762 22 6 5.2441 -10.6034 7.3160 23 1 6.1177 -10.8536 6.7143 24 6 4.8452 -11.7955 8.2194 25 6 5.5011 -11.4127 9.5707 26 8 5.3356 -9.9798 9.6314 27 6 5.5785 -9.4728 8.3083 28 6 2.8945 -6.0849 1.3056 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.6169 -4.9209 -0.8886 32 1 0.6176 -4.9205 0.8914 33 1 1.4505 -7.9046 -0.6397 34 1 0.5543 -7.1655 0.7580 35 1 3.5073 -8.1189 0.6767 36 1 1.7008 -9.1885 2.2529 37 1 1.6352 -7.6013 3.0559 38 1 4.3354 -8.4171 2.9167 39 1 5.1085 -8.6852 5.4844 40 1 5.1744 -10.2727 4.6819 41 1 3.7618 -11.8632 8.3183 42 1 5.2585 -12.7288 7.8370 43 1 6.5584 -11.6775 9.5726 44 1 4.9822 -11.8945 10.3993 45 1 6.6258 -9.1884 8.2069 46 1 4.9401 -8.6104 8.1165 47 1 2.3460 -5.6357 2.1337 48 1 3.9406 -5.7808 1.2722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481624550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:55 Heat of formation + Delta-G solvation = -119.373739 kcal Electronic energy + Delta-G solvation = -28684.299365 eV Core-core repulsion = 24354.901667 eV Total energy + Delta-G solvation = -4329.397698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49272 -40.11454 -39.44192 -37.76946 -37.31454 -34.94891 -33.91027 -32.01150 -31.41911 -30.95335 -29.47905 -28.56021 -26.67842 -26.01317 -24.77988 -23.27041 -22.54144 -21.83478 -21.00690 -19.63889 -19.21930 -17.95125 -17.87121 -17.61095 -16.90326 -16.49015 -16.34189 -16.07639 -15.90393 -15.45758 -15.19107 -14.96795 -14.92097 -14.51473 -14.22231 -14.01904 -13.65843 -13.38195 -13.33153 -12.99110 -12.87843 -12.71026 -12.53308 -12.25851 -12.09182 -11.93209 -11.74487 -11.50921 -11.36793 -11.28080 -11.09943 -10.68718 -10.63891 -10.44633 -10.35810 -10.23882 -10.04719 -9.94862 -9.53053 -9.33765 -8.68265 -8.25182 -7.98030 -6.43241 -3.84180 2.32691 2.39219 3.15047 3.25673 3.32612 3.38736 3.48563 3.86813 3.94707 3.96199 4.18739 4.29487 4.33455 4.39764 4.46698 4.60385 4.61808 4.62789 4.73350 4.81443 4.91563 5.00883 5.07090 5.17480 5.21410 5.21552 5.32317 5.36543 5.38482 5.50842 5.52146 5.57165 5.71272 5.72830 5.81384 5.99723 6.10028 6.24242 6.27459 6.30371 6.56238 6.58931 7.15601 7.20548 7.53717 7.93674 8.04178 8.59527 9.16314 9.52510 10.03899 10.74560 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.001676 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.693989 B =16703.211126 C =18120.705083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.580 6.580 12 C 0.010 3.990 13 N -0.454 5.454 14 C 0.009 3.991 15 C -0.134 4.134 16 C 0.130 3.870 17 N -0.725 5.725 18 C 0.512 3.488 19 O -0.519 6.519 20 C 0.040 3.960 21 O -0.347 6.347 22 C 0.053 3.947 23 H 0.080 0.920 24 C -0.153 4.153 25 C 0.046 3.954 26 O -0.372 6.372 27 C 0.023 3.977 28 C 0.026 3.974 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 -24.500 11.694 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.464 6.464 12 C -0.122 4.122 13 N -0.176 5.176 14 C -0.121 4.121 15 C -0.154 4.154 16 C 0.006 3.994 17 N -0.379 5.379 18 C 0.297 3.703 19 O -0.394 6.394 20 C -0.040 4.040 21 O -0.265 6.265 22 C -0.005 4.005 23 H 0.098 0.902 24 C -0.190 4.190 25 C -0.030 4.030 26 O -0.291 6.291 27 C -0.055 4.055 28 C -0.103 4.103 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.210 -24.301 11.636 28.474 hybrid contribution -0.072 1.024 0.128 1.035 sum 9.138 -23.277 11.764 27.635 Atomic orbital electron populations 1.69616 1.05946 1.28080 1.50604 1.25267 0.95636 0.99735 0.97320 0.85800 0.79682 0.81138 0.77722 1.19239 1.20723 1.20759 1.19746 0.93372 0.82207 1.47547 0.87885 1.41881 1.09196 1.04621 1.64388 1.19682 0.88365 0.84516 0.84563 1.90511 1.13637 1.87033 1.55265 1.22463 0.95175 0.92622 1.01943 1.68432 1.18408 0.99967 1.30825 1.23953 0.95808 0.93581 0.98742 1.23352 1.00091 0.97025 0.94883 1.21455 0.87118 0.99954 0.90825 1.45865 1.10679 1.61515 1.19845 1.20176 0.90613 0.78080 0.81441 1.90755 1.27173 1.52184 1.69266 1.22310 0.95490 0.98971 0.87210 1.88125 1.30448 1.78310 1.29597 1.23639 0.90093 0.94544 0.92227 0.90179 1.23229 1.03863 0.97253 0.94668 1.23565 0.99956 0.81881 0.97615 1.88929 1.91768 1.20265 1.28089 1.23776 1.01065 0.97847 0.82788 1.23905 1.02293 0.92482 0.91580 0.91901 0.77489 0.89111 0.92782 0.89075 0.91069 0.87671 0.91029 0.91099 0.76249 0.89918 0.89974 0.88741 0.89324 0.91863 0.88356 0.91608 0.88685 0.91425 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.33 5.29 -10.96 -0.06 -14.38 16 10 C 0.44 10.45 7.59 -10.99 -0.08 10.36 16 11 O -0.58 -15.57 15.13 5.55 0.08 -15.48 16 12 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 13 N -0.45 -7.22 5.95 -239.52 -1.42 -8.65 16 14 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 15 C -0.13 -1.36 3.93 -89.68 -0.35 -1.71 16 16 C 0.13 1.27 5.51 -4.05 -0.02 1.25 16 17 N -0.73 -6.19 5.56 -60.30 -0.33 -6.52 16 18 C 0.51 5.48 7.91 -10.98 -0.09 5.39 16 19 O -0.52 -8.12 16.50 -14.35 -0.24 -8.35 16 20 C 0.04 0.29 6.28 36.01 0.23 0.52 16 21 O -0.35 -3.43 9.49 -55.14 -0.52 -3.95 16 22 C 0.05 0.36 3.51 -25.21 -0.09 0.27 16 23 H 0.08 0.33 7.86 -51.93 -0.41 -0.07 16 24 C -0.15 -0.93 6.90 -24.72 -0.17 -1.10 16 25 C 0.05 0.28 7.72 38.21 0.29 0.57 16 26 O -0.37 -3.53 11.52 -35.23 -0.41 -3.94 16 27 C 0.02 0.17 7.52 37.73 0.28 0.45 16 28 C 0.03 0.37 6.33 -2.63 -0.02 0.36 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 38 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 41 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.81 7.97 -51.93 -0.41 0.39 16 47 H 0.07 1.01 7.57 -51.93 -0.39 0.61 16 48 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -36.72 400.70 -9.13 -45.86 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.67 Total: 8.60 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.30 Total: 8.60 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -1.09 Total: -53.39 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.08 Total: -31.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.72 -9.13 -45.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481624550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.518 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds