Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48502 * 109.47147 * 269.99834 * 3 2 1 5 5 H 1.48501 * 109.47328 * 29.99703 * 3 2 1 6 6 H 1.48502 * 109.47160 * 150.00071 * 3 2 1 7 7 C 1.38953 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99540 * 359.97438 * 7 2 1 9 9 N 1.37095 * 119.99763 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99496 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99546 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99807 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46882 * 185.05372 * 14 13 12 16 16 H 1.09004 * 109.87404 * 302.98947 * 15 14 13 17 17 C 1.54320 * 109.88357 * 64.00454 * 15 14 13 18 18 C 1.55158 * 102.94368 * 141.76512 * 17 15 14 19 19 C 1.54909 * 101.58022 * 324.49809 * 18 17 15 20 20 N 1.47018 * 110.00904 * 181.89325 * 15 14 13 21 21 C 1.34770 * 125.65176 * 61.52384 * 20 15 14 22 22 O 1.21280 * 120.00114 * 5.07621 * 21 20 15 23 23 C 1.50701 * 120.00008 * 185.07835 * 21 20 15 24 24 H 1.08998 * 109.52529 * 305.12650 * 23 21 20 25 25 C 1.53145 * 109.52741 * 65.32584 * 23 21 20 26 26 O 1.43067 * 109.15396 * 175.21390 * 25 23 21 27 27 C 1.43084 * 113.59361 * 302.04685 * 26 25 23 28 28 C 1.53146 * 109.14858 * 57.95392 * 27 26 25 29 29 O 1.43075 * 109.52452 * 184.99943 * 23 21 20 30 30 H 0.96991 * 120.00529 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00640 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47836 * 59.99581 * 12 10 9 33 33 H 1.08999 * 109.47139 * 299.99028 * 12 10 9 34 34 H 1.00902 * 111.00054 * 303.94756 * 13 12 10 35 35 H 1.08994 * 109.47066 * 65.05512 * 14 13 12 36 36 H 1.08998 * 109.47237 * 305.04986 * 14 13 12 37 37 H 1.08998 * 110.72065 * 260.12789 * 17 15 14 38 38 H 1.09005 * 110.71859 * 23.22473 * 17 15 14 39 39 H 1.08994 * 111.00525 * 82.57107 * 18 17 15 40 40 H 1.09000 * 111.00417 * 206.38976 * 18 17 15 41 41 H 1.09000 * 110.36633 * 155.84580 * 19 18 17 42 42 H 1.09007 * 110.36900 * 278.06493 * 19 18 17 43 43 H 1.08994 * 109.52195 * 295.11727 * 25 23 21 44 44 H 1.09008 * 109.52297 * 55.31203 * 25 23 21 45 45 H 1.08998 * 109.52155 * 298.05122 * 27 26 25 46 46 H 1.08998 * 109.52107 * 177.85264 * 27 26 25 47 47 H 1.08994 * 109.52194 * 184.78568 * 28 27 26 48 48 H 1.09000 * 109.52709 * 64.58617 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0011 13 7 6.0505 -3.7553 0.0004 14 6 7.5190 -3.7944 -0.0002 15 6 7.9905 -5.2444 -0.1279 16 1 7.5721 -5.8427 0.6814 17 6 7.5497 -5.8216 -1.4895 18 6 8.7634 -6.6936 -1.9066 19 6 9.9483 -5.8602 -1.3579 20 7 9.4590 -5.3015 -0.0843 21 6 10.2301 -4.9076 0.9484 22 8 9.7161 -4.5466 1.9859 23 6 11.7311 -4.9158 0.8140 24 1 12.0646 -5.9090 0.5135 25 6 12.1561 -3.8906 -0.2413 26 8 13.5846 -3.8246 -0.2831 27 6 14.1790 -3.4801 0.9720 28 6 13.7541 -4.5053 2.0273 29 8 12.3254 -4.5713 2.0691 30 1 -0.4850 0.8399 -0.0004 31 1 3.8649 -0.3632 0.0007 32 1 5.9242 -1.8564 0.8910 33 1 5.9241 -1.8566 -0.8890 34 1 5.6751 -4.2719 0.7816 35 1 7.8941 -3.3711 0.9315 36 1 7.8976 -3.2138 -0.8414 37 1 6.6552 -6.4343 -1.3772 38 1 7.3798 -5.0220 -2.2106 39 1 8.7220 -7.6737 -1.4316 40 1 8.8213 -6.7894 -2.9909 41 1 10.8136 -6.4998 -1.1840 42 1 10.2027 -5.0594 -2.0524 43 1 11.7767 -4.1937 -1.2171 44 1 11.7537 -2.9115 0.0190 45 1 13.8446 -2.4873 1.2731 46 1 15.2646 -3.4860 0.8747 47 1 14.1335 -4.2022 3.0031 48 1 14.1564 -5.4843 1.7670 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482053467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -138.393555 kcal Electronic energy + Delta-G solvation = -30240.022454 eV Core-core repulsion = 25909.799995 eV Total energy + Delta-G solvation = -4330.222459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11623 -39.82993 -38.44594 -37.75219 -36.43243 -35.38642 -33.87738 -32.85559 -31.65075 -31.45028 -30.35948 -28.53846 -26.98204 -25.78600 -24.74888 -23.57717 -22.65898 -22.14001 -21.23120 -19.68508 -19.24403 -18.32916 -17.86214 -17.26609 -17.22880 -16.79115 -16.26145 -16.07520 -15.88212 -15.54499 -15.34067 -14.92484 -14.49143 -14.38573 -14.02641 -13.96728 -13.84825 -13.73639 -13.44755 -13.19654 -13.04729 -12.78632 -12.53369 -12.36671 -12.17021 -12.03244 -11.78833 -11.68235 -11.54096 -11.33326 -11.18479 -11.12279 -10.96437 -10.91491 -10.57713 -10.06829 -9.95878 -9.72228 -9.55309 -9.04130 -8.55321 -8.17554 -8.11768 -6.29307 -3.80568 2.16948 2.21469 3.04753 3.08529 3.11129 3.16564 3.30383 3.76476 3.90529 4.00703 4.11632 4.16204 4.27254 4.31819 4.41269 4.47786 4.52538 4.62879 4.68957 4.80295 4.88319 4.91560 4.97638 5.07552 5.14683 5.18881 5.22051 5.23040 5.30596 5.44925 5.56893 5.64915 5.67660 5.74791 5.83890 5.86206 5.95162 6.09863 6.14197 6.33846 6.40489 7.03617 7.13828 7.56151 7.60330 7.80254 8.16369 8.61786 8.96829 9.44457 9.84787 10.83842 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002199 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.502449 B =12730.524154 C =13748.924803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.564 6.564 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.049 3.951 15 C 0.143 3.857 16 H 0.079 0.921 17 C -0.112 4.112 18 C -0.136 4.136 19 C 0.092 3.908 20 N -0.613 5.613 21 C 0.536 3.464 22 O -0.507 6.507 23 C 0.043 3.957 24 H 0.093 0.907 25 C 0.036 3.964 26 O -0.372 6.372 27 C 0.019 3.981 28 C 0.023 3.977 29 O -0.350 6.350 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.352 0.648 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.718 -9.748 -3.158 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.446 6.446 12 C -0.083 4.083 13 N -0.296 5.296 14 C -0.082 4.082 15 C 0.040 3.960 16 H 0.097 0.903 17 C -0.150 4.150 18 C -0.174 4.174 19 C -0.030 4.030 20 N -0.350 5.350 21 C 0.322 3.678 22 O -0.381 6.381 23 C -0.019 4.019 24 H 0.110 0.890 25 C -0.041 4.041 26 O -0.291 6.291 27 C -0.057 4.057 28 C -0.053 4.053 29 O -0.269 6.269 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.171 0.829 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 30.817 -10.177 -3.172 32.609 hybrid contribution 0.892 1.742 0.962 2.181 sum 31.710 -8.435 -2.210 32.886 Atomic orbital electron populations 1.69617 1.05626 1.27476 1.49467 1.25040 0.95501 0.97976 0.97693 0.86670 0.79788 0.84051 0.78875 1.19611 1.20196 1.19522 1.19431 0.79235 0.96626 1.47986 0.86263 1.42208 1.07539 1.06171 1.67153 1.19684 0.88135 0.84560 0.83904 1.90560 1.69431 1.30919 1.53686 1.21685 0.95009 0.90331 1.01307 1.59992 1.05347 1.12821 1.51421 1.22252 0.89050 0.95760 1.01117 1.21539 0.78170 0.96782 0.99500 0.90272 1.22583 0.97782 0.99629 0.94992 1.22835 0.94164 0.98742 1.01639 1.22508 0.98104 0.97279 0.85148 1.48481 1.07283 1.63436 1.15753 1.19524 0.87353 0.77990 0.82904 1.90770 1.74388 1.45748 1.27172 1.22513 0.92117 1.00157 0.87120 0.88971 1.23183 0.82241 0.98942 0.99779 1.88126 1.18657 1.90904 1.31407 1.23346 0.99603 0.98278 0.84505 1.23366 0.81280 0.99492 1.01207 1.88248 1.19149 1.90866 1.28589 0.91632 0.79693 0.93716 0.89540 0.82874 0.94167 0.91041 0.89179 0.89678 0.90511 0.89493 0.90537 0.90829 0.86895 0.91281 0.91649 0.87271 0.87013 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 7 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -14.33 5.09 -10.96 -0.06 -14.39 16 10 C 0.45 10.41 7.82 -10.98 -0.09 10.32 16 11 O -0.56 -15.24 15.78 5.55 0.09 -15.15 16 12 C 0.05 0.85 6.16 -4.98 -0.03 0.82 16 13 N -0.66 -10.43 5.82 -115.06 -0.67 -11.09 16 14 C 0.05 0.63 5.05 -3.82 -0.02 0.61 16 15 C 0.14 1.57 3.08 -66.95 -0.21 1.36 16 16 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.11 -1.00 6.21 -24.90 -0.15 -1.16 16 18 C -0.14 -0.81 7.09 -24.58 -0.17 -0.98 16 19 C 0.09 0.54 5.55 -2.52 -0.01 0.53 16 20 N -0.61 -5.85 3.07 -163.01 -0.50 -6.35 16 21 C 0.54 6.33 6.96 -10.99 -0.08 6.26 16 22 O -0.51 -8.35 15.71 -14.26 -0.22 -8.58 16 23 C 0.04 0.39 2.63 -27.81 -0.07 0.32 16 24 H 0.09 0.66 7.53 -51.93 -0.39 0.27 16 25 C 0.04 0.27 6.17 37.23 0.23 0.50 16 26 O -0.37 -2.97 10.85 -48.80 -0.53 -3.50 16 27 C 0.02 0.12 7.05 37.23 0.26 0.38 16 28 C 0.02 0.15 7.05 37.23 0.26 0.42 16 29 O -0.35 -3.81 10.03 -62.50 -0.63 -4.44 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.35 5.91 8.49 -39.29 -0.33 5.57 16 35 H 0.04 0.60 6.97 -51.93 -0.36 0.24 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.81 7.82 -51.93 -0.41 0.41 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.32 7.36 -51.93 -0.38 -0.06 16 42 H 0.07 0.34 7.14 -51.92 -0.37 -0.03 16 43 H 0.11 0.63 5.91 -51.93 -0.31 0.32 16 44 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -36.73 385.57 -8.39 -45.12 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.41 Total: 11.30 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.33 Total: 11.55 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.45 Total: -57.06 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.29 Total: -31.66 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.73 -8.39 -45.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482053467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.272 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds