Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 C 1.52996 * 109.46863 * 120.00160 * 2 1 3 5 5 C 1.52995 * 109.47559 * 65.00261 * 4 2 1 6 6 H 1.09008 * 109.46918 * 304.99644 * 5 4 2 7 7 C 1.53001 * 109.47416 * 184.99904 * 5 4 2 8 8 N 1.46493 * 109.47086 * 184.99500 * 7 5 4 9 9 C 1.36945 * 119.99892 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99422 * 359.72792 * 9 8 7 11 11 C 1.38811 * 120.00031 * 179.72716 * 9 8 7 12 12 N 1.31616 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47151 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47196 * 120.00214 * 13 11 9 16 16 H 1.48500 * 109.46879 * 240.00070 * 13 11 9 17 17 N 1.46505 * 109.47326 * 64.99434 * 5 4 2 18 18 C 1.34773 * 119.99794 * 275.00509 * 17 5 4 19 19 O 1.21549 * 120.00592 * 359.97438 * 18 17 5 20 20 C 1.47837 * 119.99414 * 180.02562 * 18 17 5 21 21 C 1.40028 * 120.56362 * 359.97438 * 20 18 17 22 22 C 1.38355 * 118.29028 * 180.02562 * 21 20 18 23 23 C 1.38355 * 119.30345 * 359.97438 * 22 21 20 24 24 N 1.31922 * 121.08081 * 0.02562 * 23 22 21 25 25 C 1.31697 * 121.87908 * 359.65655 * 24 23 22 26 26 C 1.50702 * 119.71841 * 180.31104 * 25 24 23 27 27 F 1.39901 * 109.47119 * 120.31738 * 26 25 24 28 28 F 1.39904 * 109.47058 * 240.31430 * 26 25 24 29 29 H 1.08995 * 109.47251 * 299.99973 * 1 2 3 30 30 H 1.09007 * 109.47071 * 60.00023 * 1 2 3 31 31 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46940 * 239.99789 * 2 1 3 33 33 H 1.08997 * 109.47026 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47160 * 299.99922 * 3 2 1 35 35 H 1.08995 * 109.47067 * 59.99914 * 3 2 1 36 36 H 1.08996 * 109.47412 * 304.99538 * 4 2 1 37 37 H 1.09007 * 109.46729 * 184.99870 * 4 2 1 38 38 H 1.08998 * 109.47065 * 64.99277 * 7 5 4 39 39 H 1.09001 * 109.46892 * 304.99541 * 7 5 4 40 40 H 0.97000 * 120.00738 * 359.73142 * 8 7 5 41 41 H 0.97004 * 119.99151 * 179.97438 * 12 11 9 42 42 H 0.96995 * 119.99326 * 95.00245 * 17 5 4 43 43 H 1.07993 * 120.85182 * 0.02590 * 21 20 18 44 44 H 1.07997 * 120.34859 * 180.02562 * 22 21 20 45 45 H 1.07994 * 119.45798 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47205 * 0.31918 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0527 7 6 2.0353 -2.8888 2.4918 8 7 1.7568 -4.3233 2.3875 9 6 2.0358 -5.1533 3.4404 10 1 2.4652 -4.7510 4.3460 11 6 1.7667 -6.5116 3.3436 12 7 1.2438 -7.0018 2.2397 13 14 2.1466 -7.6437 4.7801 14 1 2.7257 -6.8516 5.8949 15 1 0.8957 -8.3008 5.2367 16 1 3.1211 -8.6786 4.3505 17 7 2.3147 -2.8421 0.0625 18 6 1.7814 -2.7778 -1.1735 19 8 0.7365 -2.1838 -1.3546 20 6 2.4668 -3.4308 -2.3090 21 6 3.6707 -4.1187 -2.1138 22 6 4.2722 -4.7119 -3.2095 23 6 3.6705 -4.6080 -4.4510 24 7 2.5356 -3.9534 -4.6052 25 6 1.9218 -3.3774 -3.5924 26 6 0.6234 -2.6478 -3.8227 27 9 -0.3840 -3.2328 -3.0481 28 9 0.7718 -1.3053 -3.4580 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.4633 -2.4668 3.3181 39 1 3.0996 -2.7375 2.6720 40 1 1.3716 -4.6847 1.5739 41 1 1.0561 -7.9511 2.1720 42 1 3.1483 -3.3164 0.2071 43 1 4.1182 -4.1844 -1.1331 44 1 5.2011 -5.2510 -3.0967 45 1 4.1376 -5.0704 -5.3079 46 1 0.3536 -2.7102 -4.8770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482389261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -89.853695 kcal Electronic energy + Delta-G solvation = -31705.293247 eV Core-core repulsion = 27266.088119 eV Total energy + Delta-G solvation = -4439.205128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.61213 -46.58712 -40.79468 -39.40485 -36.66626 -34.97679 -33.78463 -32.88185 -32.22767 -31.03636 -29.12606 -26.83288 -26.81444 -25.56833 -24.73649 -22.99679 -22.49552 -21.21278 -20.29936 -19.64181 -18.18486 -17.53216 -17.38964 -16.91003 -16.88910 -16.31133 -15.69705 -15.43346 -15.24641 -14.77406 -14.55285 -14.23941 -13.84014 -13.78076 -13.45610 -13.25893 -13.17966 -13.11800 -13.00589 -12.91581 -12.81373 -12.18782 -12.12738 -11.97563 -11.90828 -11.47665 -11.23103 -11.05711 -10.96827 -10.85596 -10.49531 -10.28562 -10.21237 -10.13211 -10.04135 -9.97993 -9.75308 -9.47702 -9.43644 -8.96458 -8.62284 -7.00364 -5.82224 -3.12303 0.38328 0.83436 2.90493 3.28986 3.36171 3.38797 3.44857 3.46983 3.65437 4.18850 4.34699 4.49547 4.52941 4.58589 4.78134 4.97552 5.00682 5.13751 5.20497 5.23087 5.24005 5.28895 5.50039 5.60218 5.64453 5.68466 5.73802 5.77968 5.92010 5.99664 6.07987 6.13812 6.15673 6.19351 6.20631 6.32918 6.43811 6.53257 6.64801 6.74252 6.89579 6.93824 7.45618 7.64677 7.77104 8.35327 8.44856 9.47436 10.03208 10.38552 11.39898 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.004385 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.349617 B = 6384.399006 C = 8131.731949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.122 4.122 5 C 0.138 3.862 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.700 5.700 18 C 0.550 3.450 19 O -0.502 6.502 20 C -0.139 4.139 21 C -0.041 4.041 22 C -0.157 4.157 23 C 0.115 3.885 24 N -0.466 5.466 25 C 0.098 3.902 26 C 0.340 3.660 27 F -0.179 7.179 28 F -0.182 7.182 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.400 0.600 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.167 0.833 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 10.860 -13.329 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.161 4.161 5 C 0.033 3.967 6 H 0.112 0.888 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.352 5.352 18 C 0.335 3.665 19 O -0.378 6.378 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.177 4.177 23 C -0.042 4.042 24 N -0.175 5.175 25 C -0.043 4.043 26 C 0.285 3.715 27 F -0.160 7.160 28 F -0.163 7.163 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.184 0.816 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.090 11.316 -14.060 18.752 hybrid contribution 1.018 -1.294 1.598 2.294 sum 6.109 10.023 -12.462 17.119 Atomic orbital electron populations 1.21803 0.94784 1.03131 0.99564 1.21135 0.96736 0.94756 0.98445 1.21855 1.00149 0.97123 1.01112 1.22024 1.00739 0.94722 0.98574 1.21425 0.98611 0.91044 0.85576 0.88781 1.20975 0.97825 0.86489 0.93151 1.42367 1.76480 1.00913 1.17862 1.19258 1.34729 0.88958 0.94429 0.91096 1.24747 1.01625 0.96972 0.97412 1.69683 1.49234 1.12770 1.26123 0.86135 0.77470 0.80928 0.81733 1.20547 1.21831 1.21910 1.45802 1.27135 1.55269 1.06951 1.17851 0.85284 0.80628 0.82768 1.90871 1.21598 1.41556 1.83772 1.20970 0.96967 1.01226 0.95298 1.21931 0.92695 0.91876 1.00251 1.22258 1.01881 1.00157 0.93405 1.22931 0.90305 0.93626 0.97341 1.67307 1.09405 1.07927 1.32821 1.21859 0.96756 0.96687 0.88974 1.19732 0.82350 0.75319 0.94127 1.93078 1.60767 1.83879 1.78262 1.93039 1.95830 1.33840 1.93640 0.94510 0.93739 0.90494 0.90578 0.93517 0.93222 0.93198 0.91087 0.92107 0.94811 0.95872 0.77994 0.93532 0.76439 0.83418 0.83443 0.81567 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.03 37.16 0.30 -1.71 16 2 C -0.09 -1.28 2.38 -90.62 -0.22 -1.49 16 3 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 4 C -0.12 -1.65 4.36 -26.74 -0.12 -1.77 16 5 C 0.14 2.22 2.33 -67.93 -0.16 2.06 16 6 H 0.09 1.74 5.92 -51.92 -0.31 1.43 16 7 C 0.14 2.70 5.82 -4.04 -0.02 2.68 16 8 N -0.73 -17.61 5.43 -59.91 -0.33 -17.93 16 9 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 13 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 N -0.70 -10.77 4.43 -54.75 -0.24 -11.01 16 18 C 0.55 8.84 6.13 -12.33 -0.08 8.76 16 19 O -0.50 -8.84 6.29 5.32 0.03 -8.81 16 20 C -0.14 -1.99 5.85 -104.82 -0.61 -2.61 16 21 C -0.04 -0.48 9.65 -38.87 -0.37 -0.86 16 22 C -0.16 -1.47 10.10 -39.50 -0.40 -1.87 16 23 C 0.12 1.11 11.17 -17.47 -0.20 0.92 16 24 N -0.47 -5.79 10.24 -9.14 -0.09 -5.89 16 25 C 0.10 1.37 6.31 -82.17 -0.52 0.86 16 26 C 0.34 4.78 5.02 36.01 0.18 4.96 16 27 F -0.18 -3.05 15.04 2.25 0.03 -3.01 16 28 F -0.18 -2.81 15.02 2.25 0.03 -2.77 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.31 4.75 -51.93 -0.25 1.06 16 32 H 0.08 1.19 5.19 -51.93 -0.27 0.92 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.39 10.01 7.34 -40.82 -0.30 9.71 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.40 5.76 6.71 -40.82 -0.27 5.49 16 43 H 0.15 1.53 6.52 -52.49 -0.34 1.18 16 44 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -32.29 372.29 -7.72 -40.01 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.36 Total: 12.32 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.12 Total: 1.45 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.06 Total: -61.70 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.03 Total: -8.81 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.07 Total: -5.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.29 -7.72 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482389261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.840 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds