Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47645 * 2 1 4 4 C 1.52996 * 109.47330 * 120.00505 * 2 1 3 5 5 C 1.53002 * 109.47341 * 64.16905 * 4 2 1 6 6 H 1.09003 * 109.46560 * 305.07131 * 5 4 2 7 7 C 1.52995 * 109.47153 * 65.07243 * 5 4 2 8 8 N 1.46499 * 109.47112 * 175.00295 * 7 5 4 9 9 C 1.36938 * 119.99830 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00290 * 359.97438 * 9 8 7 11 11 C 1.38818 * 119.99872 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99714 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99939 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47227 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47015 * 120.00130 * 13 11 9 16 16 H 1.48500 * 109.47044 * 239.99879 * 13 11 9 17 17 N 1.46500 * 109.47294 * 185.07630 * 5 4 2 18 18 C 1.34775 * 120.00109 * 85.57523 * 17 5 4 19 19 O 1.21547 * 120.00180 * 4.58556 * 18 17 5 20 20 C 1.47840 * 119.99850 * 184.57794 * 18 17 5 21 21 C 1.40023 * 120.56345 * 325.89614 * 20 18 17 22 22 C 1.38355 * 118.29047 * 180.27001 * 21 20 18 23 23 C 1.38353 * 119.30069 * 359.47923 * 22 21 20 24 24 N 1.31917 * 121.08263 * 0.53638 * 23 22 21 25 25 C 1.31702 * 121.87989 * 359.73666 * 24 23 22 26 26 C 1.50696 * 119.71873 * 180.02562 * 25 24 23 27 27 F 1.39904 * 109.46854 * 14.28056 * 26 25 24 28 28 F 1.39899 * 109.46923 * 134.27885 * 26 25 24 29 29 H 1.08997 * 109.46551 * 302.15607 * 1 2 3 30 30 H 1.09007 * 109.46857 * 62.15166 * 1 2 3 31 31 H 1.08997 * 109.47047 * 182.15339 * 1 2 3 32 32 H 1.09003 * 109.47186 * 240.00377 * 2 1 3 33 33 H 1.09000 * 109.47724 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47364 * 300.00307 * 3 2 1 35 35 H 1.09006 * 109.47207 * 60.00217 * 3 2 1 36 36 H 1.09005 * 109.46790 * 304.17248 * 4 2 1 37 37 H 1.08999 * 109.47382 * 184.16864 * 4 2 1 38 38 H 1.09001 * 109.47022 * 295.00050 * 7 5 4 39 39 H 1.08998 * 109.47384 * 54.99989 * 7 5 4 40 40 H 0.97004 * 120.00319 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99669 * 179.97438 * 12 11 9 42 42 H 0.97004 * 119.99707 * 265.58299 * 17 5 4 43 43 H 1.08005 * 120.85511 * 359.97438 * 21 20 18 44 44 H 1.08000 * 120.34467 * 179.73872 * 22 21 20 45 45 H 1.08006 * 119.45414 * 180.26852 * 23 22 21 46 46 H 1.09003 * 109.47453 * 254.28127 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6175 -2.1909 1.1977 6 1 0.5369 -2.2539 1.0690 7 6 2.3123 -2.8806 0.0220 8 7 2.0024 -4.3122 0.0431 9 6 2.5180 -5.1386 -0.9194 10 1 3.1527 -4.7349 -1.6943 11 6 2.2247 -6.4953 -0.8991 12 7 1.4516 -6.9874 0.0456 13 14 2.9286 -7.6227 -2.2117 14 1 3.7617 -6.8295 -3.1508 15 1 3.7659 -8.6677 -1.5696 16 1 1.8182 -8.2675 -2.9578 17 7 1.9997 -2.8530 2.4475 18 6 1.1801 -2.8002 3.5161 19 8 0.0880 -2.2757 3.4190 20 6 1.6095 -3.3805 4.8063 21 6 2.4151 -4.5253 4.8392 22 6 2.7846 -5.0319 6.0725 23 6 2.3596 -4.3910 7.2226 24 7 1.6009 -3.3135 7.1611 25 6 1.2185 -2.7968 6.0117 26 6 0.3521 -1.5639 5.9983 27 9 0.3580 -0.9760 7.2678 28 9 0.8509 -0.6535 5.0604 29 1 -0.3632 0.5470 0.8700 30 1 -0.3633 0.4801 -0.9087 31 1 -0.3633 -1.0269 0.0386 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6169 -0.2525 2.1376 37 1 3.1275 -0.6571 1.2873 38 1 1.9601 -2.4463 -0.9137 39 1 3.3902 -2.7409 0.1042 40 1 1.4320 -4.6748 0.7389 41 1 1.2464 -7.9353 0.0595 42 1 2.8428 -3.3293 2.5058 43 1 2.7357 -5.0035 3.9253 44 1 3.4018 -5.9158 6.1366 45 1 2.6502 -4.7818 8.1866 46 1 -0.6679 -1.8394 5.7303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482389262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -101.192185 kcal Electronic energy + Delta-G solvation = -30866.462188 eV Core-core repulsion = 26426.765386 eV Total energy + Delta-G solvation = -4439.696802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.91321 -46.91846 -40.78456 -39.26707 -37.22475 -34.90510 -33.79020 -32.91452 -32.37526 -31.04593 -29.11835 -27.02846 -26.89115 -25.61012 -24.80874 -22.93072 -22.50581 -21.58280 -20.53230 -19.43717 -18.17966 -17.67375 -17.53027 -17.33676 -16.96164 -16.34098 -15.73116 -15.43328 -15.27121 -14.89571 -14.51914 -14.39290 -14.00706 -13.75329 -13.62359 -13.50619 -13.44509 -13.21956 -13.12916 -13.04704 -12.80950 -12.47119 -12.32873 -12.15813 -11.94184 -11.68497 -11.44103 -11.14977 -10.93941 -10.80532 -10.80016 -10.48699 -10.26223 -10.21172 -10.08027 -10.03622 -9.82126 -9.64548 -9.45139 -8.99503 -8.73928 -7.03879 -5.86513 -3.16107 0.39441 0.85044 2.79678 3.19697 3.29527 3.36292 3.42879 3.44592 3.48933 4.03610 4.23935 4.49245 4.54715 4.59466 4.72570 4.89677 4.99851 5.01860 5.09498 5.10472 5.11534 5.20123 5.39993 5.47449 5.54260 5.69281 5.75303 5.75792 5.81170 5.84316 5.92808 6.01088 6.09623 6.16070 6.18512 6.21182 6.33713 6.38755 6.48759 6.57870 6.67388 6.85378 7.46706 7.61662 7.66946 8.30267 8.32045 9.43699 9.98828 10.34355 11.35872 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.008711 B = 0.004199 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.565383 B = 6666.022652 C = 9333.367201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.120 4.120 5 C 0.135 3.865 6 H 0.096 0.904 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.699 5.699 18 C 0.564 3.436 19 O -0.532 6.532 20 C -0.147 4.147 21 C -0.039 4.039 22 C -0.158 4.158 23 C 0.115 3.885 24 N -0.460 5.460 25 C 0.097 3.903 26 C 0.330 3.670 27 F -0.192 7.192 28 F -0.184 7.184 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.024 0.976 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.404 0.596 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 10.277 11.272 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.159 4.159 5 C 0.031 3.969 6 H 0.113 0.887 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.580 5.580 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.348 5.348 18 C 0.349 3.651 19 O -0.409 6.409 20 C -0.152 4.152 21 C -0.065 4.065 22 C -0.177 4.177 23 C -0.042 4.042 24 N -0.168 5.168 25 C -0.043 4.043 26 C 0.276 3.724 27 F -0.173 7.173 28 F -0.165 7.165 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.239 0.761 43 H 0.174 0.826 44 H 0.167 0.833 45 H 0.184 0.816 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.443 11.053 11.812 16.241 hybrid contribution 1.005 -1.614 -1.201 2.249 sum 2.448 9.439 10.611 14.411 Atomic orbital electron populations 1.21880 0.95120 1.02389 1.01157 1.21116 0.96159 0.95801 0.98392 1.21821 1.00694 0.96227 1.01423 1.21974 1.00807 0.94660 0.98500 1.21437 1.01641 0.91020 0.82818 0.88655 1.21032 0.96622 0.86405 0.94373 1.42366 1.60118 1.01347 1.33824 1.19262 1.23946 0.89124 1.04897 0.91066 1.24734 1.00297 0.96952 0.98754 1.69671 1.40936 1.12863 1.34543 0.86133 0.78186 0.80888 0.81062 1.20532 1.21890 1.21836 1.45845 1.22893 1.54390 1.11683 1.17841 0.84816 0.79258 0.83197 1.90763 1.20714 1.45057 1.84404 1.20818 1.01052 0.98640 0.94697 1.22024 0.91748 0.92784 0.99980 1.22297 1.01081 1.01531 0.92839 1.22986 0.91926 0.90020 0.99259 1.67395 1.10874 1.11454 1.27103 1.21759 0.96824 0.97031 0.88689 1.20078 0.98290 0.81334 0.72706 1.93005 1.97703 1.85482 1.41116 1.93039 1.89703 1.68704 1.65084 0.92815 0.93141 0.91989 0.90488 0.92919 0.92898 0.92934 0.91389 0.91908 0.94428 0.95826 0.78108 0.93530 0.76130 0.82634 0.83326 0.81567 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.99 37.16 0.33 -1.57 16 2 C -0.10 -1.20 2.78 -90.62 -0.25 -1.45 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C -0.12 -1.64 4.46 -26.73 -0.12 -1.76 16 5 C 0.13 2.16 2.10 -67.93 -0.14 2.02 16 6 H 0.10 1.73 5.62 -51.93 -0.29 1.44 16 7 C 0.14 2.64 5.46 -4.05 -0.02 2.62 16 8 N -0.73 -17.15 5.43 -59.91 -0.33 -17.47 16 9 C -0.24 -6.36 9.99 -15.06 -0.15 -6.51 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 13 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.70 -10.76 4.46 -54.75 -0.24 -11.00 16 18 C 0.56 9.05 6.43 -12.33 -0.08 8.97 16 19 O -0.53 -9.63 13.70 5.32 0.07 -9.56 16 20 C -0.15 -2.06 5.78 -104.82 -0.61 -2.67 16 21 C -0.04 -0.47 9.47 -38.87 -0.37 -0.84 16 22 C -0.16 -1.51 10.10 -39.50 -0.40 -1.91 16 23 C 0.12 1.15 11.17 -17.47 -0.20 0.96 16 24 N -0.46 -6.02 9.78 -9.14 -0.09 -6.11 16 25 C 0.10 1.37 6.60 -82.17 -0.54 0.83 16 26 C 0.33 4.61 4.61 36.00 0.17 4.77 16 27 F -0.19 -2.74 16.92 2.25 0.04 -2.70 16 28 F -0.18 -2.85 14.73 2.25 0.03 -2.82 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.90 6.33 -51.93 -0.33 0.57 16 32 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.70 6.72 -51.93 -0.35 0.35 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 9.64 7.33 -40.82 -0.30 9.34 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.40 5.81 7.67 -40.82 -0.31 5.49 16 43 H 0.16 1.83 7.55 -52.48 -0.40 1.44 16 44 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.14 1.69 7.77 -51.93 -0.40 1.29 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -31.50 384.46 -7.64 -39.15 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.49 Total: 12.50 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.13 Total: 1.85 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.07 Total: -60.72 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.50 -7.64 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482389262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.045 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds