Wall clock time and date at job start Sat Apr 11 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47329 * 2 1 4 4 C 1.52997 * 109.47342 * 120.00281 * 2 1 3 5 5 H 1.09003 * 109.47529 * 181.19529 * 4 2 1 6 6 C 1.53005 * 109.46911 * 301.19121 * 4 2 1 7 7 N 1.46496 * 109.47274 * 174.99936 * 6 4 2 8 8 C 1.34772 * 120.00345 * 179.97438 * 7 6 4 9 9 O 1.21287 * 119.99456 * 359.72863 * 8 7 6 10 10 C 1.50701 * 120.00509 * 179.72435 * 8 7 6 11 11 S 1.81001 * 109.47169 * 180.02562 * 10 8 7 12 12 C 1.76200 * 99.99847 * 179.97438 * 11 10 8 13 13 H 1.08005 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99957 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00166 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47275 * 90.00345 * 16 14 12 18 18 H 1.48500 * 109.47137 * 210.00023 * 16 14 12 19 19 H 1.48498 * 109.47475 * 330.00138 * 16 14 12 20 20 N 1.46894 * 109.47371 * 61.18791 * 4 2 1 21 21 C 1.46906 * 111.00059 * 86.54932 * 20 4 2 22 22 C 1.50695 * 109.46979 * 179.72398 * 21 20 4 23 23 C 1.35356 * 126.75480 * 94.71519 * 22 21 20 24 24 N 1.35311 * 106.17586 * 179.84521 * 23 22 21 25 25 C 1.46504 * 125.86450 * 180.11058 * 24 23 22 26 26 N 1.28716 * 108.26511 * 0.41952 * 24 23 22 27 27 N 1.28634 * 110.17693 * 359.73403 * 26 24 23 28 28 H 1.08997 * 109.47224 * 300.00139 * 1 2 3 29 29 H 1.09005 * 109.47092 * 60.00309 * 1 2 3 30 30 H 1.08999 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47240 * 239.99887 * 2 1 3 32 32 H 1.09008 * 109.47422 * 173.98096 * 3 2 1 33 33 H 1.08996 * 109.47335 * 293.98353 * 3 2 1 34 34 H 1.08997 * 109.47283 * 53.97904 * 3 2 1 35 35 H 1.08997 * 109.47368 * 54.99556 * 6 4 2 36 36 H 1.09001 * 109.47003 * 294.99783 * 6 4 2 37 37 H 0.97003 * 119.99790 * 359.72471 * 7 6 4 38 38 H 1.09001 * 109.46642 * 300.00307 * 10 8 7 39 39 H 1.09001 * 109.46775 * 60.00013 * 10 8 7 40 40 H 0.96996 * 120.00141 * 179.97438 * 15 14 12 41 41 H 1.00900 * 111.00510 * 210.50012 * 20 4 2 42 42 H 1.09001 * 109.46866 * 299.72260 * 21 20 4 43 43 H 1.08998 * 109.47011 * 59.72391 * 21 20 4 44 44 H 1.07996 * 126.90527 * 359.97438 * 23 22 21 45 45 H 1.08999 * 109.47113 * 270.32947 * 25 24 23 46 46 H 1.08994 * 109.47009 * 30.33778 * 25 24 23 47 47 H 1.09000 * 109.46619 * 150.32954 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1298 -0.7028 1.2600 6 6 1.5056 -0.0176 2.4983 7 7 1.8943 -0.7758 3.6899 8 6 1.5318 -0.3414 4.9131 9 8 0.8878 0.6800 5.0276 10 6 1.9263 -1.1247 6.1386 11 16 1.2955 -0.2914 7.6163 12 6 1.8839 -1.3900 8.8619 13 1 2.4507 -2.2667 8.5848 14 6 1.6199 -1.1284 10.1992 15 7 0.9297 -0.0597 10.5369 16 14 2.2444 -2.2928 11.5196 17 1 3.5962 -1.8634 11.9594 18 1 1.3164 -2.2701 12.6788 19 1 2.3170 -3.6707 10.9706 20 7 1.5740 -2.1143 1.2349 21 6 2.4994 -2.9713 0.4818 22 6 1.9930 -4.3906 0.4949 23 6 1.2317 -4.9877 -0.4517 24 7 1.0234 -6.2544 -0.0242 25 6 0.2508 -7.2816 -0.7275 26 7 1.6151 -6.4000 1.1096 27 7 2.2026 -5.3066 1.4470 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1247 1.4443 0.1078 33 1 1.7673 1.9243 -0.9389 34 1 1.5913 1.9865 0.8311 35 1 0.4186 0.0426 2.4445 36 1 1.9227 0.9878 2.5553 37 1 2.4096 -1.5926 3.5984 38 1 1.5045 -2.1281 6.0798 39 1 3.0130 -1.1900 6.1938 40 1 0.7449 0.1229 11.4714 41 1 1.4423 -2.4612 2.1732 42 1 2.5653 -2.6185 -0.5474 43 1 3.4864 -2.9335 0.9428 44 1 0.8661 -4.5430 -1.3655 45 1 -0.7926 -7.2275 -0.4171 46 1 0.3193 -7.1153 -1.8025 47 1 0.6512 -8.2662 -0.4860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482517015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:53 Heat of formation + Delta-G solvation = 59.025527 kcal Electronic energy + Delta-G solvation = -26939.265369 eV Core-core repulsion = 23092.649266 eV Total energy + Delta-G solvation = -3846.616103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.54241 -39.64027 -38.12331 -35.42466 -34.17778 -33.94403 -32.38055 -31.39607 -29.80052 -28.47097 -27.53162 -27.30279 -25.51386 -25.18055 -23.49240 -22.39790 -21.46084 -20.39642 -19.33135 -17.89062 -17.57028 -16.97030 -16.61431 -16.39823 -15.89769 -15.41934 -15.21539 -14.78109 -14.75650 -14.56857 -14.26023 -13.91086 -13.68210 -13.65161 -13.42749 -13.18407 -13.11290 -12.93286 -12.50920 -12.41005 -12.16545 -12.01914 -11.78110 -11.52252 -11.26615 -11.08306 -11.03089 -11.01730 -10.97404 -10.72253 -10.59312 -10.40287 -9.76742 -9.57023 -9.36588 -9.02300 -8.84324 -8.73220 -8.18653 -6.44735 -6.16963 -3.87007 1.26698 2.00446 2.18299 3.07032 3.14290 3.26558 3.31780 3.36710 3.72826 3.83078 4.02093 4.17615 4.25314 4.40438 4.47542 4.51824 4.68077 4.75865 4.76758 4.87932 5.05076 5.11943 5.14524 5.18244 5.21099 5.23385 5.42558 5.52624 5.54103 5.60654 5.66172 5.75773 5.79138 5.85205 5.92423 5.94701 5.97174 6.15861 6.19800 6.21183 6.28459 6.61542 6.67195 7.03802 7.64792 7.69056 8.20961 8.40532 8.64430 9.28565 10.90503 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.002592 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.227711 B =10801.794691 C =13363.491294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.155 4.155 4 C 0.081 3.919 5 H 0.055 0.945 6 C 0.114 3.886 7 N -0.743 5.743 8 C 0.534 3.466 9 O -0.516 6.516 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.680 5.680 21 C 0.146 3.854 22 C -0.020 4.020 23 C -0.031 4.031 24 N -0.297 5.297 25 C 0.081 3.919 26 N -0.084 5.084 27 N -0.261 5.261 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.394 0.606 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.350 0.650 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.190 0.810 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -9.169 -31.458 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.212 4.212 4 C -0.028 4.028 5 H 0.073 0.927 6 C -0.010 4.010 7 N -0.398 5.398 8 C 0.320 3.680 9 O -0.390 6.390 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.682 4.682 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.504 5.504 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.196 1.196 20 N -0.315 5.315 21 C 0.015 3.985 22 C -0.158 4.158 23 C -0.183 4.183 24 N -0.090 5.090 25 C -0.060 4.060 26 N -0.064 5.064 27 N -0.128 5.128 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.207 0.793 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.150 -8.261 -30.496 31.595 hybrid contribution 1.733 -1.871 0.250 2.563 sum 1.583 -10.133 -30.246 31.938 Atomic orbital electron populations 1.21811 0.94414 1.02690 1.01176 1.21004 0.96958 0.95204 0.96544 1.21945 1.01012 0.96023 1.02265 1.21849 0.97727 0.88109 0.95158 0.92740 1.21642 1.01362 0.95473 0.82514 1.46076 1.58809 1.28952 1.06000 1.20279 0.78678 0.85338 0.83675 1.90701 1.37887 1.24315 1.86084 1.23540 1.04868 1.03446 0.98619 1.85358 1.71718 1.33943 0.92316 1.22879 1.40595 1.11880 0.92879 0.90908 1.24988 0.94866 0.95833 0.97917 1.70018 1.36957 1.25296 1.18113 0.86171 0.78616 0.80510 0.80240 1.20293 1.20782 1.19647 1.60499 1.48144 1.01172 1.21651 1.20135 0.93622 0.84605 1.00121 1.21836 1.02933 0.97808 0.93262 1.23360 1.05146 0.85705 1.04087 1.47274 1.35311 1.10840 1.15577 1.22273 0.96169 0.90484 0.97081 1.78362 1.09786 1.19820 0.98443 1.75096 1.17467 0.96619 1.23635 0.92493 0.93506 0.91347 0.91098 0.92724 0.92480 0.91990 0.90249 0.90692 0.77192 0.89146 0.89252 0.92233 0.82867 0.89171 0.93068 0.79271 0.88949 0.88313 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.67 37.15 0.32 -0.85 16 2 C -0.08 -0.57 2.85 -90.63 -0.26 -0.82 16 3 C -0.15 -1.12 8.70 37.16 0.32 -0.80 16 4 C 0.08 0.69 2.01 -67.72 -0.14 0.55 16 5 H 0.05 0.44 7.77 -51.93 -0.40 0.04 16 6 C 0.11 1.35 4.60 -4.04 -0.02 1.33 16 7 N -0.74 -10.27 4.98 -60.29 -0.30 -10.57 16 8 C 0.53 10.27 7.85 -10.99 -0.09 10.18 16 9 O -0.52 -11.94 15.86 5.55 0.09 -11.85 16 10 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 11 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 12 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 13 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 14 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 16 Si 0.92 21.94 29.55 -169.99 -5.02 16.91 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 N -0.68 -5.95 5.58 -107.99 -0.60 -6.55 16 21 C 0.15 1.12 6.05 -4.97 -0.03 1.09 16 22 C -0.02 -0.19 6.76 -82.78 -0.56 -0.75 16 23 C -0.03 -0.22 11.55 -17.05 -0.20 -0.42 16 24 N -0.30 -2.33 3.74 -68.06 -0.25 -2.58 16 25 C 0.08 0.22 11.39 59.85 0.68 0.90 16 26 N -0.08 -1.01 13.17 60.35 0.79 -0.22 16 27 N -0.26 -3.36 12.41 33.29 0.41 -2.94 16 28 H 0.06 0.54 6.30 -51.93 -0.33 0.21 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 31 H 0.07 0.45 7.54 -51.93 -0.39 0.06 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 35 H 0.08 1.04 6.14 -51.93 -0.32 0.72 16 36 H 0.07 0.93 6.87 -51.93 -0.36 0.58 16 37 H 0.39 4.58 7.39 -40.82 -0.30 4.28 16 38 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 39 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.35 3.71 6.70 -39.29 -0.26 3.45 16 42 H 0.09 0.50 7.53 -51.93 -0.39 0.11 16 43 H 0.05 0.41 8.05 -51.93 -0.42 -0.01 16 44 H 0.19 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 47 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -38.01 400.10 -7.15 -45.16 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.28 Total: 2.29 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 0.46 Total: -5.87 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.78 Total: -48.78 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.01 -7.15 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482517015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.183 kcal (2) G-P(sol) polarization free energy of solvation -38.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds