Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00663 * 3 2 1 5 5 H 1.48505 * 109.46713 * 30.00740 * 3 2 1 6 6 H 1.48502 * 109.46813 * 150.00160 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.47473 * 111.00238 * 91.52961 * 13 12 10 15 15 C 1.53509 * 87.93451 * 138.70082 * 14 13 12 16 16 C 1.47483 * 110.99585 * 187.49871 * 13 12 10 17 17 H 1.09000 * 113.47703 * 336.06151 * 16 13 12 18 18 C 1.53007 * 113.47584 * 106.53077 * 16 13 12 19 19 N 1.46493 * 109.46920 * 304.99668 * 18 16 13 20 20 C 1.34784 * 120.00059 * 179.97438 * 19 18 16 21 21 O 1.21284 * 119.99387 * 0.02562 * 20 19 18 22 22 C 1.50696 * 120.00166 * 179.97438 * 20 19 18 23 23 O 1.42898 * 109.47047 * 180.02562 * 22 20 19 24 24 C 1.42898 * 113.99872 * 180.02562 * 23 22 20 25 25 H 1.08996 * 110.46238 * 27.39071 * 24 23 22 26 26 C 1.54515 * 110.51215 * 149.99651 * 24 23 22 27 27 C 1.54476 * 104.06103 * 118.64146 * 26 24 23 28 28 O 1.44425 * 104.80427 * 23.98211 * 27 26 24 29 29 C 1.44421 * 105.27735 * 319.48481 * 28 27 26 30 30 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.09006 * 113.47595 * 253.47083 * 14 13 12 35 35 H 1.08998 * 113.47793 * 23.93181 * 14 13 12 36 36 H 1.09000 * 114.17065 * 87.62440 * 15 14 13 37 37 H 1.09003 * 114.17120 * 220.13821 * 15 14 13 38 38 H 1.09006 * 109.47071 * 64.99876 * 18 16 13 39 39 H 1.08994 * 109.46667 * 184.99682 * 18 16 13 40 40 H 0.97000 * 120.00080 * 0.02562 * 19 18 16 41 41 H 1.09006 * 109.47545 * 300.00387 * 22 20 19 42 42 H 1.09004 * 109.47018 * 60.00251 * 22 20 19 43 43 H 1.08999 * 110.51048 * 237.28499 * 26 24 23 44 44 H 1.08998 * 110.50761 * 359.97438 * 26 24 23 45 45 H 1.09004 * 110.37170 * 142.81305 * 27 26 24 46 46 H 1.09002 * 110.37479 * 265.03672 * 27 26 24 47 47 H 1.09003 * 110.37220 * 281.68829 * 29 28 27 48 48 H 1.08995 * 110.37490 * 159.34533 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6525 0.7002 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 7 2.1980 -5.9795 -0.0184 14 6 2.5136 -6.4118 1.3558 15 6 2.4400 -7.8618 0.8572 16 6 1.5038 -7.2674 -0.2043 17 1 0.4580 -7.2452 0.1024 18 6 1.7003 -7.8704 -1.5967 19 7 1.2948 -6.8958 -2.6125 20 6 1.3820 -7.2097 -3.9204 21 8 1.7958 -8.2993 -4.2562 22 6 0.9643 -6.2075 -4.9653 23 8 1.1480 -6.7706 -6.2658 24 6 0.7802 -5.8966 -7.3348 25 1 0.8884 -4.8556 -7.0304 26 6 1.6352 -6.1856 -8.5890 27 6 0.6033 -6.6111 -9.6568 28 8 -0.6397 -6.0138 -9.2276 29 6 -0.6672 -6.1817 -7.7934 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3907 -0.0005 32 1 0.6172 -4.9252 0.8769 33 1 0.6164 -4.9162 -0.9030 34 1 3.5095 -6.1162 1.6861 35 1 1.7374 -6.1613 2.0788 36 1 3.3796 -8.2452 0.4593 37 1 1.9543 -8.5482 1.5509 38 1 2.7507 -8.1259 -1.7371 39 1 1.0918 -8.7695 -1.6924 40 1 0.9642 -6.0244 -2.3439 41 1 -0.0862 -5.9527 -4.8252 42 1 1.5723 -5.3078 -4.8694 43 1 2.1642 -5.2868 -8.9059 44 1 2.3387 -6.9947 -8.3934 45 1 0.8903 -6.2276 -10.6360 46 1 0.5140 -7.6971 -9.6868 47 1 -0.9527 -7.2017 -7.5362 48 1 -1.3561 -5.4684 -7.3411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483650863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -115.257350 kcal Electronic energy + Delta-G solvation = -29779.927661 eV Core-core repulsion = 25450.708463 eV Total energy + Delta-G solvation = -4329.219198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60010 -40.02539 -39.25220 -37.83845 -37.12216 -34.55979 -33.97309 -31.76080 -31.46025 -30.79342 -29.60499 -28.83732 -26.91888 -25.90575 -23.83379 -23.31543 -23.01417 -21.48927 -20.73508 -19.76106 -19.36317 -17.98489 -17.67365 -17.54604 -16.57996 -16.39081 -16.15296 -16.07549 -15.68523 -15.41917 -15.14770 -15.02714 -14.60586 -14.40585 -14.24803 -13.87248 -13.81595 -13.58887 -13.28296 -12.90984 -12.70897 -12.50320 -12.46437 -12.08341 -11.86119 -11.67409 -11.60797 -11.59215 -11.39590 -11.13490 -11.06761 -10.94074 -10.60242 -10.44698 -10.27783 -10.24170 -9.85438 -9.81607 -9.56834 -9.10054 -8.89842 -8.30198 -8.03471 -6.48620 -3.89486 2.54617 2.62286 3.12682 3.22147 3.27645 3.51455 3.78399 3.80217 3.92120 4.16002 4.21727 4.36273 4.45945 4.59871 4.64577 4.67905 4.89342 4.90581 4.91290 4.95397 4.97995 5.04100 5.11676 5.24734 5.31038 5.35526 5.37969 5.39788 5.41016 5.54036 5.54955 5.59590 5.64170 5.70498 5.81392 5.90179 6.11434 6.15886 6.29899 6.34268 6.47905 6.80125 7.08328 7.42053 7.48819 7.98709 8.15751 8.54361 9.11690 9.46507 9.98675 10.69026 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007392 B = 0.002899 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.937755 B = 9654.972186 C =12819.462790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.572 6.572 12 C 0.007 3.993 13 N -0.433 5.433 14 C 0.005 3.995 15 C -0.133 4.133 16 C 0.003 3.997 17 H 0.083 0.917 18 C 0.144 3.856 19 N -0.719 5.719 20 C 0.516 3.484 21 O -0.527 6.527 22 C 0.039 3.961 23 O -0.349 6.349 24 C 0.052 3.948 25 H 0.083 0.917 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.372 6.372 29 C 0.023 3.977 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 -14.218 -8.387 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.455 6.455 12 C -0.125 4.125 13 N -0.156 5.156 14 C -0.123 4.123 15 C -0.171 4.171 16 C -0.107 4.107 17 H 0.101 0.899 18 C 0.020 3.980 19 N -0.373 5.373 20 C 0.301 3.699 21 O -0.402 6.402 22 C -0.041 4.041 23 O -0.267 6.267 24 C -0.006 4.006 25 H 0.101 0.899 26 C -0.193 4.193 27 C -0.031 4.031 28 O -0.291 6.291 29 C -0.054 4.054 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.238 0.762 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.192 -14.683 -9.268 17.501 hybrid contribution -1.164 1.531 0.933 2.138 sum -3.356 -13.152 -8.335 15.928 Atomic orbital electron populations 1.69605 1.05922 1.28199 1.50632 1.25249 0.95631 0.99695 0.97289 0.85870 0.79267 0.80811 0.78448 1.20367 1.20907 1.19412 1.19687 0.93345 0.82172 1.47637 0.87958 1.41874 1.09091 1.04590 1.64739 1.19608 0.88406 0.84276 0.84839 1.90546 1.13568 1.86847 1.54532 1.22569 0.94813 0.93589 1.01529 1.68869 1.28553 0.99216 1.18959 1.23736 1.03308 0.93892 0.91403 1.23158 1.00061 0.96706 0.97220 1.23791 0.98363 0.93284 0.95250 0.89895 1.21319 1.01165 0.90866 0.84671 1.45818 1.67007 1.19340 1.05168 1.20134 0.78488 0.88164 0.83093 1.90714 1.44996 1.23367 1.81148 1.22336 1.01949 0.96047 0.83764 1.88057 1.86434 1.39984 1.12236 1.23604 0.94221 0.94639 0.88157 0.89904 1.23031 0.98974 1.03754 0.93564 1.23422 0.83256 0.98193 0.98249 1.89146 1.39542 1.79996 1.20392 1.23966 0.96943 1.02557 0.81928 0.91851 0.77605 0.92055 0.90217 0.89107 0.91361 0.88530 0.90382 0.90650 0.91162 0.76237 0.90068 0.89489 0.89527 0.88752 0.88767 0.91833 0.90958 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.67 13.05 55.50 0.72 -22.94 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.57 -13.58 5.29 -10.96 -0.06 -13.64 16 10 C 0.44 9.89 7.83 -10.98 -0.09 9.80 16 11 O -0.57 -15.11 16.01 5.55 0.09 -15.02 16 12 C 0.01 0.11 5.04 -4.98 -0.03 0.09 16 13 N -0.43 -6.41 5.39 -237.97 -1.28 -7.70 16 14 C 0.01 0.07 7.69 -7.56 -0.06 0.01 16 15 C -0.13 -1.31 8.00 -26.20 -0.21 -1.52 16 16 C 0.00 0.04 3.25 -71.44 -0.23 -0.20 16 17 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 18 C 0.14 1.67 5.81 -4.04 -0.02 1.64 16 19 N -0.72 -8.83 5.46 -60.29 -0.33 -9.16 16 20 C 0.52 7.12 7.91 -10.98 -0.09 7.03 16 21 O -0.53 -9.23 16.50 -14.36 -0.24 -9.46 16 22 C 0.04 0.43 6.25 36.00 0.23 0.66 16 23 O -0.35 -4.35 9.51 -55.14 -0.52 -4.87 16 24 C 0.05 0.52 3.61 -25.16 -0.09 0.43 16 25 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 26 C -0.16 -1.36 6.90 -25.16 -0.17 -1.53 16 27 C 0.05 0.38 7.63 37.93 0.29 0.67 16 28 O -0.37 -4.03 11.65 -35.23 -0.41 -4.44 16 29 C 0.02 0.22 7.38 37.94 0.28 0.50 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16 32 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 33 H 0.08 1.07 6.25 -51.93 -0.32 0.74 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 0.81 7.44 -51.93 -0.39 0.42 16 36 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.98 7.88 -51.93 -0.41 0.58 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.64 6.20 -40.82 -0.25 4.39 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.87 8.00 -51.93 -0.42 0.45 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.77 397.69 -8.95 -43.71 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.45 Total: 12.13 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.43 Total: 9.90 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.95 Total: -53.43 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.08 Total: -33.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.77 -8.95 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483650863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.545 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds