Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86810 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47123 * 89.99888 * 3 2 1 5 5 H 1.48496 * 109.46616 * 209.99685 * 3 2 1 6 6 H 1.48503 * 109.46888 * 329.99505 * 3 2 1 7 7 C 1.38947 * 120.00072 * 180.26930 * 2 1 3 8 8 H 1.07997 * 119.99679 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99800 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99855 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99864 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00284 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47605 * 173.84656 * 12 10 9 14 14 C 1.47480 * 110.99626 * 294.34712 * 13 12 10 15 15 C 1.53513 * 87.93172 * 221.29167 * 14 13 12 16 16 C 1.47477 * 111.00347 * 198.37771 * 13 12 10 17 17 H 1.08998 * 113.47903 * 23.93102 * 16 13 12 18 18 C 1.53009 * 113.47534 * 253.46973 * 16 13 12 19 19 N 1.46501 * 109.46984 * 54.99426 * 18 16 13 20 20 C 1.34772 * 119.99716 * 179.97438 * 19 18 16 21 21 O 1.21279 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.50702 * 120.00220 * 180.02562 * 20 19 18 23 23 O 1.42896 * 109.47489 * 180.02562 * 22 20 19 24 24 C 1.42902 * 114.00242 * 180.02562 * 23 22 20 25 25 H 1.09001 * 110.43433 * 328.91216 * 24 23 22 26 26 C 1.54805 * 110.49001 * 206.21551 * 24 23 22 27 27 C 1.54993 * 102.09500 * 220.44478 * 26 24 23 28 28 O 1.44375 * 103.48784 * 37.02289 * 27 26 24 29 29 C 1.43742 * 106.98163 * 319.93712 * 28 27 26 30 30 H 0.97008 * 120.00406 * 359.72760 * 1 2 3 31 31 H 0.97003 * 120.00662 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47152 * 293.84623 * 12 10 9 33 33 H 1.09005 * 109.47287 * 53.84293 * 12 10 9 34 34 H 1.08997 * 113.48060 * 336.06059 * 14 13 12 35 35 H 1.09006 * 113.47645 * 106.53084 * 14 13 12 36 36 H 1.09000 * 114.17069 * 139.66662 * 15 14 13 37 37 H 1.09001 * 114.17236 * 272.37671 * 15 14 13 38 38 H 1.08994 * 109.47117 * 174.99867 * 18 16 13 39 39 H 1.09002 * 109.46520 * 295.00048 * 18 16 13 40 40 H 0.97000 * 120.00238 * 0.02562 * 19 18 16 41 41 H 1.09008 * 109.47239 * 300.00598 * 22 20 19 42 42 H 1.09001 * 109.46756 * 59.99911 * 22 20 19 43 43 H 1.08997 * 110.90739 * 338.64449 * 26 24 23 44 44 H 1.09004 * 110.90279 * 102.24350 * 26 24 23 45 45 H 1.09006 * 110.61469 * 278.52144 * 27 26 24 46 46 H 1.09002 * 110.61899 * 155.52772 * 27 26 24 47 47 H 1.08993 * 109.88284 * 267.09455 * 29 28 27 48 48 H 1.08996 * 109.87637 * 145.93180 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0465 1.4000 5 1 3.5456 1.4402 -0.7000 6 1 1.4455 2.6527 -0.7002 7 6 2.0089 -1.2033 -0.0057 8 1 1.4688 -2.1385 -0.0105 9 7 3.3799 -1.2032 -0.0051 10 6 4.0538 -2.3704 -0.0111 11 8 3.4473 -3.4208 -0.0175 12 6 5.5607 -2.3705 -0.0100 13 7 6.0504 -3.7482 0.1312 14 6 5.6903 -4.3046 1.4487 15 6 7.0926 -4.9265 1.5072 16 6 7.4581 -3.7665 0.5704 17 1 7.7604 -2.8615 1.0974 18 6 8.4370 -4.1624 -0.5368 19 7 8.2512 -3.2800 -1.6914 20 6 9.0104 -3.4427 -2.7929 21 8 9.8472 -4.3199 -2.8286 22 6 8.8198 -2.5346 -3.9805 23 8 9.7339 -2.9045 -5.0146 24 6 9.6357 -2.1007 -6.1921 25 1 8.6121 -1.7529 -6.3311 26 6 10.1144 -2.8949 -7.4317 27 6 10.9132 -1.8227 -8.2157 28 8 11.5593 -1.0571 -7.1760 29 6 10.6052 -0.9055 -6.1117 30 1 -0.4851 0.8401 0.0040 31 1 3.8649 -0.3632 -0.0004 32 1 5.9249 -1.9497 -0.9474 33 1 5.9235 -1.7688 0.8235 34 1 5.5208 -3.5432 2.2100 35 1 4.8895 -5.0428 1.4042 36 1 7.5640 -4.8730 2.4886 37 1 7.1636 -5.9117 1.0463 38 1 9.4587 -4.0692 -0.1689 39 1 8.2507 -5.1943 -0.8345 40 1 7.5822 -2.5782 -1.6628 41 1 7.7980 -2.6277 -4.3487 42 1 9.0059 -1.5028 -3.6824 43 1 10.7594 -3.7229 -7.1379 44 1 9.2663 -3.2524 -8.0158 45 1 10.2405 -1.1910 -8.7959 46 1 11.6537 -2.2927 -8.8629 47 1 10.0550 0.0270 -6.2371 48 1 11.1188 -0.9089 -5.1503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483650865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = -108.800156 kcal Electronic energy + Delta-G solvation = -29643.985601 eV Core-core repulsion = 25315.046408 eV Total energy + Delta-G solvation = -4328.939193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.69686 -40.15042 -39.37163 -38.02444 -37.22128 -34.66159 -34.05923 -31.90456 -31.83388 -31.01862 -29.72627 -28.95343 -27.03180 -26.04295 -23.67037 -23.31664 -22.93861 -21.73712 -20.82296 -19.79137 -19.50303 -18.46011 -17.77601 -17.69344 -16.86771 -16.43890 -16.34678 -15.96142 -15.89374 -15.57136 -15.19108 -15.07100 -14.89552 -14.50424 -14.32778 -13.98320 -13.71757 -13.35923 -13.21477 -12.94476 -12.80850 -12.62243 -12.59460 -12.34773 -12.19194 -11.93607 -11.84758 -11.78209 -11.53371 -11.28910 -11.18280 -10.95056 -10.69369 -10.64088 -10.35814 -10.06862 -9.93940 -9.85812 -9.66731 -9.19928 -8.91456 -8.52352 -8.28262 -6.40318 -3.92401 2.44552 2.51474 2.92311 2.97513 3.06927 3.46229 3.55780 3.60079 3.85759 4.00688 4.04862 4.28258 4.41507 4.48970 4.56519 4.57655 4.68327 4.71575 4.76591 4.85846 4.88552 4.92257 5.08675 5.09828 5.21746 5.26005 5.28949 5.29261 5.29705 5.42576 5.44222 5.58927 5.60331 5.68868 5.73245 5.80072 5.99591 6.09854 6.25315 6.36579 6.42367 6.66985 7.00295 7.31188 7.47348 8.03449 8.05467 8.48966 8.84992 9.31519 9.70757 10.72586 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.002553 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.981233 B =10964.911026 C =13387.848940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.449 3.551 11 O -0.558 6.558 12 C 0.004 3.996 13 N -0.438 5.438 14 C 0.015 3.985 15 C -0.136 4.136 16 C 0.003 3.997 17 H 0.083 0.917 18 C 0.143 3.857 19 N -0.720 5.720 20 C 0.514 3.486 21 O -0.523 6.523 22 C 0.038 3.962 23 O -0.347 6.347 24 C 0.052 3.948 25 H 0.082 0.918 26 C -0.152 4.152 27 C 0.047 3.953 28 O -0.373 6.373 29 C 0.023 3.977 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.400 0.600 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.896 -0.389 -7.377 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.439 6.439 12 C -0.128 4.128 13 N -0.161 5.161 14 C -0.114 4.114 15 C -0.174 4.174 16 C -0.107 4.107 17 H 0.101 0.899 18 C 0.019 3.981 19 N -0.374 5.374 20 C 0.299 3.701 21 O -0.398 6.398 22 C -0.041 4.041 23 O -0.264 6.264 24 C -0.006 4.006 25 H 0.100 0.900 26 C -0.190 4.190 27 C -0.030 4.030 28 O -0.292 6.292 29 C -0.054 4.054 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.116 0.884 47 H 0.084 0.916 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.998 -2.000 -8.037 22.572 hybrid contribution -0.187 2.668 0.689 2.762 sum 20.811 0.668 -7.349 22.081 Atomic orbital electron populations 1.69618 1.05652 1.27595 1.48970 1.25050 0.95497 0.97992 0.97581 0.86675 0.79723 0.84079 0.78888 1.19628 1.19570 1.20084 1.19419 0.79129 0.96652 1.48283 0.86258 1.42223 1.07595 1.06052 1.66988 1.19506 0.87753 0.84708 0.84590 1.90585 1.69153 1.30798 1.53351 1.22598 0.96489 0.91957 1.01763 1.68917 1.02240 1.15753 1.29167 1.23569 0.97753 0.99704 0.90374 1.23214 0.96977 0.98165 0.99082 1.23861 0.91635 0.99755 0.95418 0.89876 1.21342 0.97974 0.94673 0.84063 1.45821 1.39584 1.36695 1.15307 1.20130 0.81429 0.85016 0.83499 1.90731 1.34010 1.33498 1.81588 1.22327 0.94959 0.98193 0.88671 1.88106 1.58355 1.56246 1.23738 1.23646 0.99396 0.91447 0.86121 0.90043 1.23222 1.01567 0.99641 0.94558 1.23567 0.96648 0.91778 0.91002 1.88908 1.37054 1.74872 1.28364 1.23773 0.91683 0.97232 0.92697 0.91515 0.79772 0.89597 0.92465 0.91462 0.88587 0.90389 0.88528 0.91098 0.90569 0.76430 0.89664 0.90160 0.88780 0.89234 0.91824 0.88392 0.91607 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.94 13.96 55.50 0.77 -24.16 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 18.44 27.74 -169.99 -4.72 13.73 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 8 H 0.12 3.74 7.39 -52.49 -0.39 3.36 16 9 N -0.59 -13.19 5.09 -10.97 -0.06 -13.25 16 10 C 0.45 9.50 7.46 -10.99 -0.08 9.42 16 11 O -0.56 -14.23 14.98 5.55 0.08 -14.15 16 12 C 0.00 0.06 5.09 -4.98 -0.03 0.04 16 13 N -0.44 -6.18 5.74 -237.96 -1.37 -7.54 16 14 C 0.01 0.20 6.34 -7.55 -0.05 0.15 16 15 C -0.14 -1.35 8.00 -26.20 -0.21 -1.56 16 16 C 0.00 0.04 3.25 -71.44 -0.23 -0.20 16 17 H 0.08 0.74 7.63 -51.93 -0.40 0.34 16 18 C 0.14 1.53 5.82 -4.04 -0.02 1.51 16 19 N -0.72 -7.73 5.46 -60.29 -0.33 -8.06 16 20 C 0.51 6.39 7.91 -10.99 -0.09 6.30 16 21 O -0.52 -8.69 16.50 -14.35 -0.24 -8.93 16 22 C 0.04 0.36 6.28 36.01 0.23 0.59 16 23 O -0.35 -3.94 9.49 -55.14 -0.52 -4.47 16 24 C 0.05 0.44 3.51 -25.20 -0.09 0.35 16 25 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 26 C -0.15 -1.14 6.90 -24.73 -0.17 -1.31 16 27 C 0.05 0.33 7.72 38.21 0.29 0.62 16 28 O -0.37 -3.79 11.52 -35.23 -0.41 -4.19 16 29 C 0.02 0.20 7.52 37.74 0.28 0.48 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.37 7.16 5.76 -40.82 -0.24 6.93 16 32 H 0.09 1.05 6.56 -51.92 -0.34 0.71 16 33 H 0.06 0.71 7.56 -51.93 -0.39 0.31 16 34 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 35 H 0.10 1.54 7.97 -51.93 -0.41 1.12 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 40 H 0.40 3.76 6.33 -40.82 -0.26 3.50 16 41 H 0.09 0.67 8.10 -51.92 -0.42 0.24 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.83 7.97 -51.93 -0.41 0.42 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -36.15 392.84 -8.71 -44.85 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.44 Total: 11.30 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.41 Total: 8.94 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.98 Total: -53.01 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.08 Total: -31.73 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.72 Total: 13.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.15 -8.71 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483650865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.945 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds