Wall clock time and date at job start Sat Apr 11 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 120.00367 * 2 1 4 4 H 1.48500 * 109.46653 * 269.99927 * 3 2 1 5 5 H 1.48501 * 109.47044 * 29.99375 * 3 2 1 6 6 H 1.48491 * 109.47477 * 149.99689 * 3 2 1 7 7 C 1.38953 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00167 * 0.02562 * 7 2 1 9 9 N 1.37105 * 120.00148 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00215 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99792 * 359.72726 * 10 9 7 12 12 C 1.50697 * 119.99887 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46765 * 173.60069 * 12 10 9 14 14 C 1.47479 * 111.00019 * 294.32702 * 13 12 10 15 15 C 1.53507 * 87.93421 * 221.30093 * 14 13 12 16 16 C 1.47480 * 110.99649 * 198.35967 * 13 12 10 17 17 H 1.08997 * 113.47914 * 23.93809 * 16 13 12 18 18 C 1.53001 * 113.47878 * 253.47040 * 16 13 12 19 19 N 1.46498 * 109.46857 * 54.99866 * 18 16 13 20 20 C 1.34782 * 119.99792 * 180.02562 * 19 18 16 21 21 O 1.21280 * 119.99861 * 0.02562 * 20 19 18 22 22 C 1.50694 * 119.99858 * 179.97438 * 20 19 18 23 23 O 1.42908 * 109.47159 * 180.02562 * 22 20 19 24 24 C 1.42891 * 114.00166 * 180.02562 * 23 22 20 25 25 H 1.09003 * 110.75580 * 29.29302 * 24 23 22 26 26 C 1.55299 * 110.85045 * 152.77157 * 24 23 22 27 27 C 1.55207 * 100.82803 * 152.17564 * 26 24 23 28 28 O 1.43638 * 105.25990 * 323.81450 * 27 26 24 29 29 C 1.43233 * 109.97287 * 24.28466 * 28 27 26 30 30 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99630 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47456 * 293.59758 * 12 10 9 33 33 H 1.09000 * 109.47161 * 53.60227 * 12 10 9 34 34 H 1.09005 * 113.47902 * 336.07275 * 14 13 12 35 35 H 1.08999 * 113.47347 * 106.47211 * 14 13 12 36 36 H 1.08997 * 114.17034 * 139.67285 * 15 14 13 37 37 H 1.09005 * 114.16754 * 272.37960 * 15 14 13 38 38 H 1.08992 * 109.47144 * 175.00260 * 18 16 13 39 39 H 1.09008 * 109.46815 * 295.00384 * 18 16 13 40 40 H 0.96995 * 120.00629 * 0.02562 * 19 18 16 41 41 H 1.09002 * 109.47519 * 300.00013 * 22 20 19 42 42 H 1.08994 * 109.47461 * 60.00399 * 22 20 19 43 43 H 1.09000 * 111.12675 * 270.23684 * 26 24 23 44 44 H 1.08999 * 111.12863 * 34.40122 * 26 24 23 45 45 H 1.09002 * 110.36739 * 204.79960 * 27 26 24 46 46 H 1.08997 * 110.21477 * 82.75385 * 27 26 24 47 47 H 1.08992 * 109.83413 * 238.76928 * 29 28 27 48 48 H 1.09008 * 109.90859 * 117.83984 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2035 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4211 0.0056 12 6 5.5607 -2.3706 0.0022 13 7 6.0502 -3.7471 0.1564 14 6 5.6905 -4.2909 1.4792 15 6 7.0928 -4.9122 1.5434 16 6 7.4580 -3.7613 0.5954 17 1 7.7605 -2.8514 1.1137 18 6 8.4367 -4.1678 -0.5082 19 7 8.2507 -3.2964 -1.6710 20 6 9.0090 -3.4702 -2.7716 21 8 9.8451 -4.3484 -2.7994 22 6 8.8173 -2.5743 -3.9680 23 8 9.7306 -2.9546 -4.9992 24 6 9.6313 -2.1628 -6.1846 25 1 9.2939 -1.1537 -5.9479 26 6 10.9868 -2.1291 -6.9418 27 6 10.5009 -1.9116 -8.3998 28 8 9.2818 -2.6635 -8.5081 29 6 8.6924 -2.8291 -7.2132 30 1 -0.4850 0.8401 -0.0004 31 1 3.8649 -0.3634 0.0014 32 1 5.9248 -1.9588 -0.9390 33 1 5.9234 -1.7612 0.8300 34 1 5.5212 -3.5223 2.2333 35 1 4.8890 -5.0286 1.4421 36 1 7.5643 -4.8494 2.5240 37 1 7.1635 -5.9018 1.0918 38 1 9.4585 -4.0711 -0.1414 39 1 8.2503 -5.2025 -0.7960 40 1 7.5818 -2.5943 -1.6490 41 1 7.7953 -2.6711 -4.3344 42 1 9.0037 -1.5395 -3.6806 43 1 11.6057 -1.2984 -6.6027 44 1 11.5159 -3.0769 -6.8427 45 1 11.2410 -2.2872 -9.1063 46 1 10.3101 -0.8536 -8.5793 47 1 8.5892 -3.8902 -6.9868 48 1 7.7143 -2.3486 -7.1864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483650867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:32 Heat of formation + Delta-G solvation = -108.641638 kcal Electronic energy + Delta-G solvation = -29646.965669 eV Core-core repulsion = 25318.033350 eV Total energy + Delta-G solvation = -4328.932319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70217 -40.13494 -39.38848 -38.02375 -37.28402 -34.67673 -34.05628 -31.93471 -31.83508 -31.02239 -29.77306 -28.97812 -27.02962 -26.04317 -23.67062 -23.19712 -22.83346 -21.94755 -20.84677 -19.79766 -19.50230 -18.45869 -17.87074 -17.71942 -16.86116 -16.45783 -16.27545 -16.08555 -15.79804 -15.44318 -15.18663 -15.00400 -14.91608 -14.51388 -14.29981 -13.96648 -13.71137 -13.63867 -13.32073 -12.92791 -12.82829 -12.73089 -12.57167 -12.34558 -12.16806 -11.94299 -11.90210 -11.79052 -11.53475 -11.28563 -11.20684 -10.95464 -10.70082 -10.63914 -10.11327 -10.06583 -9.95612 -9.89609 -9.66533 -9.21381 -8.91769 -8.52139 -8.28016 -6.40010 -3.92057 2.41634 2.47776 2.92548 2.97458 3.07013 3.36038 3.59186 3.62218 3.85296 3.96871 4.00951 4.27264 4.41895 4.43492 4.53990 4.57301 4.67778 4.70990 4.72884 4.85610 4.86459 4.87946 5.09430 5.20352 5.22567 5.27469 5.28329 5.29277 5.30623 5.42351 5.49868 5.55947 5.58696 5.68429 5.72682 5.79750 5.99386 6.09270 6.24334 6.41854 6.53453 6.61127 6.99930 7.29432 7.47610 8.03375 8.03924 8.49233 8.85314 9.31808 9.70987 10.72936 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.002612 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.135969 B =10716.010319 C =13209.182533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.449 3.551 11 O -0.558 6.558 12 C 0.004 3.996 13 N -0.438 5.438 14 C 0.015 3.985 15 C -0.136 4.136 16 C 0.003 3.997 17 H 0.083 0.917 18 C 0.143 3.857 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.523 6.523 22 C 0.039 3.961 23 O -0.344 6.344 24 C 0.053 3.947 25 H 0.083 0.917 26 C -0.153 4.153 27 C 0.051 3.949 28 O -0.378 6.378 29 C 0.027 3.973 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.401 0.599 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.718 0.596 -6.162 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.234 3.766 11 O -0.439 6.439 12 C -0.128 4.128 13 N -0.161 5.161 14 C -0.114 4.114 15 C -0.174 4.174 16 C -0.107 4.107 17 H 0.101 0.899 18 C 0.020 3.980 19 N -0.374 5.374 20 C 0.299 3.701 21 O -0.399 6.399 22 C -0.041 4.041 23 O -0.262 6.262 24 C -0.006 4.006 25 H 0.100 0.900 26 C -0.190 4.190 27 C -0.025 4.025 28 O -0.298 6.298 29 C -0.050 4.050 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.236 0.764 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.516 -1.187 -6.987 23.605 hybrid contribution 0.150 2.841 0.911 2.988 sum 22.666 1.654 -6.076 23.524 Atomic orbital electron populations 1.69617 1.05653 1.27593 1.48952 1.25050 0.95496 0.97990 0.97582 0.86673 0.79706 0.84079 0.78893 1.19569 1.20111 1.19617 1.19423 0.79124 0.96654 1.48292 0.86252 1.42222 1.07601 1.06046 1.66980 1.19505 0.87748 0.84709 0.84609 1.90590 1.69143 1.30793 1.53356 1.22598 0.96510 0.91940 1.01760 1.68923 1.02222 1.16134 1.28778 1.23567 0.97759 0.99792 0.90287 1.23213 0.96973 0.98255 0.98987 1.23860 0.91654 0.99763 0.95405 0.89890 1.21343 0.97966 0.94869 0.83868 1.45820 1.39600 1.36987 1.14969 1.20119 0.81442 0.84919 0.83575 1.90731 1.34074 1.33226 1.81828 1.22345 0.95155 0.98205 0.88422 1.88071 1.58128 1.56897 1.23110 1.23776 0.96239 0.94701 0.85845 0.89952 1.23367 0.96622 1.04636 0.94386 1.23394 0.86679 0.96335 0.96122 1.88447 1.38245 1.75371 1.27698 1.23684 0.96457 1.02242 0.82622 0.91513 0.79778 0.89592 0.92477 0.91481 0.88574 0.90393 0.88517 0.91105 0.90543 0.76415 0.89673 0.89971 0.89124 0.88899 0.89138 0.91833 0.89831 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.96 55.50 0.77 -24.21 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 18.47 27.74 -169.99 -4.72 13.75 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 8 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 9 N -0.59 -13.20 5.09 -10.96 -0.06 -13.26 16 10 C 0.45 9.51 7.46 -10.99 -0.08 9.43 16 11 O -0.56 -14.25 14.98 5.54 0.08 -14.17 16 12 C 0.00 0.06 5.10 -4.97 -0.03 0.04 16 13 N -0.44 -6.16 5.74 -237.96 -1.37 -7.53 16 14 C 0.01 0.20 6.34 -7.56 -0.05 0.15 16 15 C -0.14 -1.35 8.00 -26.20 -0.21 -1.56 16 16 C 0.00 0.03 3.25 -71.44 -0.23 -0.20 16 17 H 0.08 0.73 7.63 -51.93 -0.40 0.34 16 18 C 0.14 1.51 5.81 -4.04 -0.02 1.49 16 19 N -0.72 -7.60 5.46 -60.30 -0.33 -7.93 16 20 C 0.51 6.27 7.91 -10.99 -0.09 6.18 16 21 O -0.52 -8.55 16.50 -14.35 -0.24 -8.79 16 22 C 0.04 0.36 6.27 36.00 0.23 0.58 16 23 O -0.34 -3.80 9.61 -55.14 -0.53 -4.33 16 24 C 0.05 0.44 3.46 -24.78 -0.09 0.35 16 25 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 26 C -0.15 -1.08 6.91 -24.34 -0.17 -1.25 16 27 C 0.05 0.36 7.78 38.33 0.30 0.66 16 28 O -0.38 -3.92 11.36 -35.23 -0.40 -4.32 16 29 C 0.03 0.25 7.58 37.88 0.29 0.54 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.37 7.17 5.76 -40.82 -0.24 6.93 16 32 H 0.09 1.04 6.56 -51.93 -0.34 0.70 16 33 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 34 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 35 H 0.10 1.54 7.96 -51.93 -0.41 1.13 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.92 7.88 -51.92 -0.41 0.51 16 40 H 0.40 3.69 6.33 -40.82 -0.26 3.44 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.85 8.05 -51.93 -0.42 0.44 16 48 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -35.99 393.01 -8.70 -44.69 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.45 Total: 11.23 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.40 Total: 8.94 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.98 Total: -52.92 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.08 Total: -31.61 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.72 Total: 13.75 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.99 -8.70 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483650867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.953 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds