Wall clock time and date at job start Sat Apr 11 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47210 * 270.00114 * 3 2 1 5 5 H 1.48506 * 109.47251 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47424 * 149.99882 * 3 2 1 7 7 C 1.38958 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99408 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.47477 * 111.00119 * 74.03061 * 13 12 10 15 15 C 1.53509 * 87.93097 * 138.70275 * 14 13 12 16 16 C 1.47482 * 110.99974 * 170.00220 * 13 12 10 17 17 H 1.09004 * 113.47576 * 336.06185 * 16 13 12 18 18 C 1.53001 * 113.47866 * 106.46774 * 16 13 12 19 19 N 1.46505 * 109.46929 * 305.00157 * 18 16 13 20 20 C 1.34777 * 119.99982 * 180.02562 * 19 18 16 21 21 O 1.21288 * 119.99794 * 359.97438 * 20 19 18 22 22 C 1.50694 * 120.00345 * 179.97438 * 20 19 18 23 23 O 1.42896 * 109.47368 * 179.97438 * 22 20 19 24 24 C 1.42899 * 114.00149 * 179.97438 * 23 22 20 25 25 H 1.09006 * 110.45665 * 332.61091 * 24 23 22 26 26 C 1.54510 * 110.51426 * 209.99961 * 24 23 22 27 27 C 1.54477 * 104.06479 * 241.35703 * 26 24 23 28 28 O 1.44432 * 104.80326 * 23.97846 * 27 26 24 29 29 C 1.44424 * 105.27463 * 319.48819 * 28 27 26 30 30 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.09006 * 113.47157 * 253.46717 * 14 13 12 35 35 H 1.08995 * 113.47927 * 23.93402 * 14 13 12 36 36 H 1.09001 * 114.16899 * 220.32556 * 15 14 13 37 37 H 1.09001 * 114.17259 * 87.62394 * 15 14 13 38 38 H 1.08999 * 109.47183 * 64.99869 * 18 16 13 39 39 H 1.08999 * 109.47029 * 185.00653 * 18 16 13 40 40 H 0.97002 * 120.00189 * 359.97438 * 19 18 16 41 41 H 1.09001 * 109.47262 * 300.00546 * 22 20 19 42 42 H 1.09007 * 109.46566 * 60.00108 * 22 20 19 43 43 H 1.09001 * 110.50734 * 0.02562 * 26 24 23 44 44 H 1.09005 * 110.50385 * 122.57270 * 26 24 23 45 45 H 1.08999 * 110.36837 * 142.80946 * 27 26 24 46 46 H 1.08997 * 110.37018 * 265.14944 * 27 26 24 47 47 H 1.08998 * 110.37072 * 281.68008 * 29 28 27 48 48 H 1.09000 * 110.37124 * 159.34262 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0072 11 8 3.4473 -3.4210 0.0072 12 6 5.5607 -2.3706 0.0141 13 7 6.0503 -3.7555 0.0194 14 6 5.8754 -4.3830 -1.3037 15 6 7.2649 -5.0113 -1.1277 16 6 7.5060 -3.8024 -0.2129 17 1 7.8899 -2.9289 -0.7398 18 6 8.3132 -4.1379 1.0428 19 7 7.9745 -3.1911 2.1084 20 6 8.5677 -3.2934 3.3143 21 8 9.3814 -4.1695 3.5175 22 6 8.2198 -2.3193 4.4102 23 8 8.9736 -2.6327 5.5830 24 6 8.7176 -1.7635 6.6880 25 1 8.3973 -0.7831 6.3353 26 6 9.9739 -1.6348 7.5782 27 6 9.5216 -2.1873 8.9480 28 8 8.4142 -3.0636 8.6451 29 6 7.6547 -2.3785 7.6254 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3633 0.0014 32 1 5.9281 -1.8591 -0.8755 33 1 5.9200 -1.8543 0.9044 34 1 5.0684 -5.1152 -1.3337 35 1 5.8241 -3.6646 -2.1217 36 1 7.8715 -5.0138 -2.0332 37 1 7.2588 -5.9697 -0.6084 38 1 8.0754 -5.1508 1.3677 39 1 9.3778 -4.0682 0.8197 40 1 7.3240 -2.4902 1.9458 41 1 8.4574 -1.3064 4.0849 42 1 7.1552 -2.3889 4.6336 43 1 10.7905 -2.2339 7.1751 44 1 10.2748 -0.5908 7.6654 45 1 10.3308 -2.7467 9.4174 46 1 9.1955 -1.3739 9.5962 47 1 7.0424 -1.5945 8.0708 48 1 7.0298 -3.0848 7.0789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483650869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:35 Heat of formation + Delta-G solvation = -107.827963 kcal Electronic energy + Delta-G solvation = -29779.581154 eV Core-core repulsion = 25450.684119 eV Total energy + Delta-G solvation = -4328.897036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.67775 -40.09608 -39.31503 -38.02163 -37.09580 -34.63401 -34.04239 -31.86995 -31.81437 -31.01750 -29.67433 -28.89353 -27.00943 -26.04112 -23.66371 -23.35028 -22.97488 -21.57298 -20.80191 -19.78697 -19.49237 -18.45594 -17.68308 -17.66535 -16.67137 -16.47400 -16.27773 -16.08937 -15.72580 -15.61325 -15.18758 -15.08829 -14.90959 -14.48054 -14.31250 -13.96701 -13.70815 -13.34959 -13.13595 -12.86498 -12.79627 -12.63150 -12.37286 -12.31202 -12.13201 -11.91335 -11.80147 -11.74610 -11.53304 -11.27738 -11.19411 -10.96673 -10.68743 -10.64110 -10.43362 -10.05601 -9.89729 -9.75602 -9.65531 -9.17283 -8.94263 -8.48594 -8.26853 -6.38916 -3.90843 2.47728 2.56556 2.92471 2.98102 3.07332 3.54937 3.60699 3.61735 3.86224 4.01685 4.13977 4.29947 4.45071 4.52933 4.58087 4.61346 4.69226 4.72081 4.78522 4.89036 4.92538 5.03267 5.07164 5.08875 5.22353 5.26301 5.28069 5.29804 5.37183 5.43277 5.46708 5.56512 5.63573 5.67238 5.74524 5.80831 5.96889 6.09478 6.25832 6.35307 6.42023 6.75639 7.00359 7.34184 7.48874 8.05173 8.08922 8.50739 8.86719 9.33116 9.72905 10.74123 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008372 B = 0.002765 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.634239 B =10124.378611 C =12672.226903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.556 6.556 12 C 0.005 3.995 13 N -0.437 5.437 14 C 0.012 3.988 15 C -0.135 4.135 16 C 0.003 3.997 17 H 0.083 0.917 18 C 0.143 3.857 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.523 6.523 22 C 0.038 3.962 23 O -0.346 6.346 24 C 0.052 3.948 25 H 0.081 0.919 26 C -0.155 4.155 27 C 0.045 3.955 28 O -0.368 6.368 29 C 0.023 3.977 30 H 0.274 0.726 31 H 0.369 0.631 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.400 0.600 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.381 1.657 7.493 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.237 3.763 11 O -0.438 6.438 12 C -0.127 4.127 13 N -0.159 5.159 14 C -0.116 4.116 15 C -0.173 4.173 16 C -0.107 4.107 17 H 0.101 0.899 18 C 0.019 3.981 19 N -0.375 5.375 20 C 0.299 3.701 21 O -0.398 6.398 22 C -0.042 4.042 23 O -0.264 6.264 24 C -0.006 4.006 25 H 0.099 0.901 26 C -0.192 4.192 27 C -0.032 4.032 28 O -0.286 6.286 29 C -0.054 4.054 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.115 -0.217 8.369 22.714 hybrid contribution 0.236 2.937 -0.902 3.082 sum 21.351 2.720 7.467 22.782 Atomic orbital electron populations 1.69617 1.05648 1.27558 1.49083 1.25046 0.95490 0.97966 0.97639 0.86676 0.79694 0.84110 0.78872 1.19643 1.20113 1.19601 1.19421 0.79140 0.96646 1.48220 0.86264 1.42212 1.07577 1.06030 1.67176 1.19488 0.87705 0.84689 0.84461 1.90586 1.69160 1.30818 1.53188 1.22585 0.96657 0.92028 1.01463 1.68896 1.04050 1.13596 1.29388 1.23611 0.98011 0.99199 0.90828 1.23197 0.97274 0.97727 0.99118 1.23827 0.91605 0.99606 0.95629 0.89920 1.21334 0.98143 0.93607 0.84973 1.45831 1.44994 1.34682 1.11975 1.20140 0.81433 0.85536 0.82941 1.90733 1.33188 1.34819 1.81044 1.22325 0.97385 0.97964 0.86489 1.88121 1.64272 1.54502 1.19493 1.23628 0.95739 0.93451 0.87784 0.90069 1.23087 0.98437 1.02702 0.94991 1.23424 0.90004 0.93966 0.95820 1.89190 1.39460 1.42490 1.57464 1.23994 0.94385 0.97662 0.89379 0.91536 0.79808 0.92328 0.89859 0.88666 0.91458 0.90379 0.88483 0.90556 0.91127 0.76444 0.90127 0.89800 0.88911 0.89489 0.88742 0.92094 0.91183 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.96 55.50 0.77 -24.27 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.46 27.74 -169.99 -4.71 13.75 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.05 6.52 56.52 0.37 -4.69 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.49 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 9 N -0.59 -13.27 5.09 -10.96 -0.06 -13.32 16 10 C 0.45 9.62 7.62 -10.98 -0.08 9.53 16 11 O -0.56 -14.35 15.34 5.55 0.09 -14.26 16 12 C 0.01 0.07 5.07 -4.98 -0.03 0.05 16 13 N -0.44 -6.20 5.63 -237.96 -1.34 -7.54 16 14 C 0.01 0.16 6.71 -7.55 -0.05 0.11 16 15 C -0.13 -1.32 8.00 -26.21 -0.21 -1.53 16 16 C 0.00 0.04 3.25 -71.44 -0.23 -0.20 16 17 H 0.08 0.72 7.77 -51.93 -0.40 0.32 16 18 C 0.14 1.56 5.82 -4.04 -0.02 1.54 16 19 N -0.72 -8.02 5.46 -60.29 -0.33 -8.35 16 20 C 0.51 6.64 7.91 -10.99 -0.09 6.55 16 21 O -0.52 -8.94 16.50 -14.36 -0.24 -9.17 16 22 C 0.04 0.38 6.25 36.00 0.23 0.61 16 23 O -0.35 -4.15 9.51 -55.14 -0.52 -4.67 16 24 C 0.05 0.46 3.61 -25.16 -0.09 0.37 16 25 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 26 C -0.15 -1.15 6.90 -25.16 -0.17 -1.33 16 27 C 0.04 0.35 7.63 37.93 0.29 0.64 16 28 O -0.37 -4.22 11.65 -35.23 -0.41 -4.63 16 29 C 0.02 0.21 7.38 37.94 0.28 0.49 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.37 7.17 5.76 -40.82 -0.24 6.93 16 32 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 33 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 34 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 35 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 38 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.40 3.94 6.22 -40.82 -0.25 3.69 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -36.80 393.40 -8.69 -45.49 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.43 Total: 11.70 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.43 Total: 9.36 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.95 Total: -53.48 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.09 Total: -32.75 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.71 Total: 13.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.80 -8.69 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483650869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.341 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds