Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00160 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00444 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99933 * 3 2 1 7 7 C 1.38941 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 O 1.42894 * 114.17112 * 272.37761 * 15 14 13 17 17 C 1.53000 * 114.34164 * 139.68416 * 15 14 13 18 18 N 1.46501 * 109.47392 * 86.07443 * 17 15 14 19 19 C 1.34774 * 120.00190 * 179.97438 * 18 17 15 20 20 O 1.21282 * 120.00110 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99828 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.47030 * 180.02562 * 21 19 18 23 23 H 1.08998 * 110.75134 * 57.01909 * 22 21 19 24 24 C 1.55306 * 110.84635 * 180.71024 * 22 21 19 25 25 C 1.54953 * 100.94129 * 152.32586 * 24 22 21 26 26 O 1.43646 * 105.12946 * 323.55476 * 25 24 22 27 27 C 1.43235 * 109.97514 * 24.43010 * 26 25 24 28 28 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 29 29 H 0.96996 * 119.99520 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 34 34 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 35 35 H 0.96709 * 114.00212 * 273.83953 * 16 15 14 36 36 H 1.09001 * 109.47250 * 206.07479 * 17 15 14 37 37 H 1.08998 * 109.47303 * 326.07570 * 17 15 14 38 38 H 0.97005 * 119.99734 * 0.02562 * 18 17 15 39 39 H 1.09008 * 109.47199 * 300.00014 * 21 19 18 40 40 H 1.08998 * 109.47278 * 59.99897 * 21 19 18 41 41 H 1.08997 * 111.12843 * 270.23890 * 24 22 21 42 42 H 1.09002 * 111.12536 * 34.40952 * 24 22 21 43 43 H 1.08994 * 110.30620 * 204.64552 * 25 24 22 44 44 H 1.08998 * 110.39595 * 82.50904 * 25 24 22 45 45 H 1.09001 * 109.82873 * 238.76978 * 27 26 25 46 46 H 1.09006 * 109.90390 * 117.84024 * 27 26 25 47 47 H 1.08994 * 113.48196 * 253.46980 * 28 13 12 48 48 H 1.09001 * 113.47462 * 23.88110 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3703 -0.0021 13 7 6.0505 -3.7553 -0.0027 14 6 6.3180 -4.2220 1.3705 15 6 7.5914 -4.8918 0.8354 16 8 7.3921 -6.2182 0.3427 17 6 8.8054 -4.7661 1.7580 18 7 8.7863 -5.8520 2.7411 19 6 9.7654 -5.9442 3.6626 20 8 10.6622 -5.1279 3.6783 21 6 9.7459 -7.0617 4.6735 22 6 10.9599 -6.9359 5.5962 23 1 10.9740 -5.9619 6.0852 24 6 10.9809 -8.0844 6.6415 25 6 12.5009 -8.2015 6.9191 26 8 13.1332 -7.9579 5.6525 27 6 12.2700 -7.1784 4.8166 28 6 7.5051 -3.8015 -0.2419 29 1 -0.4849 0.8401 0.0004 30 1 3.8649 -0.3632 -0.0014 31 1 5.9242 -1.8557 -0.8917 32 1 5.9242 -1.8573 0.8883 33 1 6.5155 -3.4127 2.0734 34 1 5.5771 -4.9308 1.7402 35 1 7.4470 -6.9030 1.0233 36 1 9.7191 -4.8274 1.1667 37 1 8.7711 -3.8072 2.2751 38 1 8.0692 -6.5052 2.7283 39 1 8.8324 -7.0006 5.2652 40 1 9.7801 -8.0204 4.1561 41 1 10.4373 -7.8045 7.5438 42 1 10.5866 -9.0082 6.2181 43 1 12.7440 -9.2019 7.2771 44 1 12.8127 -7.4533 7.6478 45 1 12.0573 -7.7218 3.8959 46 1 12.7427 -6.2245 4.5821 47 1 7.7703 -4.1540 -1.2386 48 1 8.0193 -2.8796 0.0298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484264685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = -114.870314 kcal Electronic energy + Delta-G solvation = -29323.645921 eV Core-core repulsion = 24994.443506 eV Total energy + Delta-G solvation = -4329.202415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07347 -40.36994 -39.22604 -38.13097 -36.15310 -34.62809 -34.03555 -33.93560 -31.69976 -30.87980 -30.28717 -28.41547 -26.76574 -26.17538 -24.83246 -23.05371 -22.59168 -21.55956 -20.71463 -20.19373 -19.37536 -18.42025 -18.04378 -17.26621 -16.96171 -16.47754 -16.15896 -15.93625 -15.82312 -15.51513 -15.36244 -15.06708 -14.84970 -14.51076 -14.22283 -13.94066 -13.61081 -13.49314 -13.31204 -13.22376 -13.07755 -12.78776 -12.50893 -12.41260 -12.22805 -12.16426 -11.87787 -11.78766 -11.39807 -11.36127 -11.29492 -11.12616 -10.84931 -10.61121 -10.29442 -10.09875 -9.98218 -9.88280 -9.58707 -9.57002 -8.93332 -8.35345 -8.18172 -6.31504 -3.82961 2.17510 2.57432 3.00570 3.05547 3.13673 3.47202 3.52894 3.72490 3.82684 3.84829 4.02430 4.09231 4.15814 4.34121 4.38185 4.39352 4.61921 4.70142 4.76735 4.81153 4.93251 5.01703 5.05445 5.10239 5.14435 5.22744 5.24392 5.31406 5.32731 5.38240 5.43760 5.45785 5.51865 5.62126 5.65005 5.71318 5.82295 5.87239 5.90501 6.35471 6.59559 6.89970 6.96535 7.28631 7.57591 7.72589 8.13648 8.60119 8.95111 9.41962 9.83757 10.81743 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.001736 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.255174 B =16128.166317 C =16478.076841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.555 6.555 12 C 0.002 3.998 13 N -0.426 5.426 14 C -0.019 4.019 15 C 0.090 3.910 16 O -0.515 6.515 17 C 0.105 3.895 18 N -0.730 5.730 19 C 0.514 3.486 20 O -0.534 6.534 21 C -0.133 4.133 22 C -0.106 4.106 23 H 0.094 0.906 24 C -0.154 4.154 25 C 0.050 3.950 26 O -0.388 6.388 27 C 0.060 3.940 28 C 0.012 3.988 29 H 0.273 0.727 30 H 0.369 0.631 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.370 0.630 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.493 -13.176 11.893 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.436 6.436 12 C -0.130 4.130 13 N -0.147 5.147 14 C -0.148 4.148 15 C 0.047 3.953 16 O -0.320 6.320 17 C -0.020 4.020 18 N -0.385 5.385 19 C 0.300 3.700 20 O -0.410 6.410 21 C -0.173 4.173 22 C -0.125 4.125 23 H 0.112 0.888 24 C -0.192 4.192 25 C -0.026 4.026 26 O -0.308 6.308 27 C -0.016 4.016 28 C -0.118 4.118 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.218 0.782 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.234 0.766 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.145 -13.252 10.804 29.586 hybrid contribution 0.352 1.610 1.046 1.952 sum 24.497 -11.642 11.850 29.599 Atomic orbital electron populations 1.69624 1.05616 1.27447 1.49541 1.25030 0.95491 0.97929 0.97734 0.86671 0.79701 0.84087 0.78892 1.19606 1.20191 1.19614 1.19423 0.79223 0.96622 1.48022 0.86319 1.42216 1.07522 1.06063 1.67587 1.19525 0.87789 0.84587 0.84054 1.90574 1.69197 1.30895 1.52886 1.22598 0.96904 0.91244 1.02232 1.68900 1.11356 1.18319 1.16135 1.24651 0.97072 1.00318 0.92789 1.22524 0.92731 0.85018 0.94978 1.86692 1.94380 1.13872 1.37021 1.21949 0.98824 0.91195 0.89993 1.45942 1.27966 1.31321 1.33236 1.20678 0.81315 0.86500 0.81491 1.90732 1.35421 1.42393 1.72464 1.21702 1.00571 0.98241 0.96757 1.22485 0.94108 1.00272 0.95674 0.88754 1.23359 0.97329 0.98889 0.99584 1.23352 0.91148 1.01358 0.86744 1.88411 1.42632 1.73584 1.26145 1.23192 0.89392 0.95852 0.93161 1.24005 0.91473 0.95897 1.00426 0.91637 0.79801 0.89011 0.92104 0.90621 0.88707 0.78237 0.90074 0.89992 0.76594 0.87996 0.88221 0.89584 0.90012 0.89722 0.92118 0.91681 0.90368 0.88309 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.30 -8.65 10.16 -14.94 -0.15 -8.80 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 10 C 0.46 10.45 7.85 -10.98 -0.09 10.36 16 11 O -0.55 -15.26 16.01 5.55 0.09 -15.17 16 12 C 0.00 0.04 5.30 -4.97 -0.03 0.01 16 13 N -0.43 -6.67 5.82 -246.06 -1.43 -8.11 16 14 C -0.02 -0.24 7.14 -7.54 -0.05 -0.29 16 15 C 0.09 0.89 1.71 -90.09 -0.15 0.73 16 16 O -0.52 -5.40 13.55 -35.23 -0.48 -5.88 16 17 C 0.10 0.84 5.42 -4.04 -0.02 0.82 16 18 N -0.73 -4.58 5.34 -60.29 -0.32 -4.90 16 19 C 0.51 3.91 7.62 -10.99 -0.08 3.82 16 20 O -0.53 -6.12 14.89 5.56 0.08 -6.04 16 21 C -0.13 -0.60 5.09 -27.88 -0.14 -0.74 16 22 C -0.11 -0.64 2.59 -88.68 -0.23 -0.87 16 23 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 24 C -0.15 -0.68 6.62 -24.48 -0.16 -0.84 16 25 C 0.05 0.31 7.78 38.19 0.30 0.60 16 26 O -0.39 -3.67 11.36 -35.23 -0.40 -4.07 16 27 C 0.06 0.50 6.38 37.88 0.24 0.74 16 28 C 0.01 0.13 7.11 -7.54 -0.05 0.08 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 31 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.06 0.84 7.30 -51.93 -0.38 0.46 16 33 H 0.08 0.85 7.22 -51.93 -0.38 0.48 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.37 2.23 7.21 45.56 0.33 2.55 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 38 H 0.40 1.49 6.95 -40.82 -0.28 1.21 16 39 H 0.10 0.29 8.14 -51.92 -0.42 -0.14 16 40 H 0.10 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.30 8.04 -51.93 -0.42 -0.12 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.51 7.76 -51.93 -0.40 0.11 16 46 H 0.08 0.77 7.72 -51.93 -0.40 0.37 16 47 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -38.29 391.41 -8.04 -46.32 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.76 Total: 9.95 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.72 Total: 6.64 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -1.04 Total: -52.29 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.71 Total: -31.15 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.29 -8.04 -46.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484264685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.547 kcal (2) G-P(sol) polarization free energy of solvation -38.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds