Wall clock time and date at job start Sat Apr 11 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48505 * 109.46862 * 269.99627 * 3 2 1 5 5 H 1.48494 * 109.47397 * 29.99400 * 3 2 1 6 6 H 1.48503 * 109.47553 * 149.99814 * 3 2 1 7 7 C 1.38953 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99977 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99744 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99842 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99635 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00242 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47253 * 179.97438 * 12 10 9 14 14 C 1.47955 * 111.00054 * 189.99994 * 13 12 10 15 15 C 1.53939 * 86.18224 * 137.58387 * 14 13 12 16 16 O 1.42905 * 113.73287 * 90.63582 * 15 14 13 17 17 C 1.53002 * 113.73707 * 221.81472 * 15 14 13 18 18 N 1.46497 * 109.47286 * 178.09639 * 17 15 14 19 19 C 1.34779 * 120.00027 * 179.97438 * 18 17 15 20 20 O 1.21277 * 119.99873 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99934 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.46918 * 180.02562 * 21 19 18 23 23 H 1.09001 * 110.80801 * 305.70483 * 22 21 19 24 24 C 1.54806 * 110.90911 * 182.07755 * 22 21 19 25 25 C 1.54097 * 104.19164 * 220.92462 * 24 22 21 26 26 O 1.43743 * 107.29278 * 357.96770 * 25 24 22 27 27 C 1.44426 * 106.99879 * 26.49063 * 26 25 24 28 28 C 1.47960 * 111.00399 * 289.36176 * 13 12 10 29 29 H 0.97001 * 120.00366 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00247 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46967 * 60.00264 * 12 10 9 32 32 H 1.09002 * 109.47005 * 299.99772 * 12 10 9 33 33 H 1.08994 * 113.76274 * 23.27033 * 14 13 12 34 34 H 1.09006 * 113.85949 * 251.91032 * 14 13 12 35 35 H 0.96705 * 113.99788 * 180.02562 * 16 15 14 36 36 H 1.08992 * 109.47024 * 298.10179 * 17 15 14 37 37 H 1.09000 * 109.46779 * 58.09769 * 17 15 14 38 38 H 0.97000 * 119.99676 * 0.02562 * 18 17 15 39 39 H 1.08992 * 109.47746 * 300.00512 * 21 19 18 40 40 H 1.09001 * 109.46463 * 60.00591 * 21 19 18 41 41 H 1.09005 * 110.48903 * 339.60275 * 24 22 21 42 42 H 1.08998 * 110.49255 * 102.24695 * 24 22 21 43 43 H 1.09005 * 109.87824 * 117.39068 * 25 24 22 44 44 H 1.08998 * 109.88262 * 238.39708 * 25 24 22 45 45 H 1.09008 * 110.64766 * 201.48337 * 27 26 25 46 46 H 1.08995 * 110.60434 * 78.47352 * 27 26 25 47 47 H 1.09001 * 113.76006 * 108.09454 * 28 13 12 48 48 H 1.09007 * 113.75282 * 336.73498 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5608 -2.3704 0.0011 13 7 6.0505 -3.7553 0.0017 14 6 7.5097 -3.8017 0.2416 15 6 7.2146 -4.9895 1.1752 16 8 7.2577 -6.2595 0.5214 17 6 8.0157 -4.9623 2.4785 18 7 7.6310 -6.1039 3.3121 19 6 8.2110 -6.2858 4.5150 20 8 9.0511 -5.5041 4.9075 21 6 7.8149 -7.4598 5.3727 22 6 8.6161 -7.4327 6.6759 23 1 9.6859 -7.3888 6.4718 24 6 8.2724 -8.6551 7.5613 25 6 8.2017 -8.0796 8.9890 26 8 8.5278 -6.6823 8.9030 27 6 8.1747 -6.2474 7.5718 28 6 5.7956 -4.4074 1.3051 29 1 -0.4851 0.8400 -0.0004 30 1 3.8648 -0.3632 0.0007 31 1 5.9241 -1.8566 0.8911 32 1 5.9241 -1.8566 -0.8890 33 1 7.8981 -2.9236 0.7575 34 1 8.0931 -4.0699 -0.6393 35 1 7.0724 -7.0085 1.1044 36 1 9.0803 -5.0202 2.2518 37 1 7.8080 -4.0355 3.0133 38 1 6.9594 -6.7293 2.9979 39 1 6.7505 -7.4013 5.5998 40 1 8.0218 -8.3867 4.8378 41 1 7.3098 -9.0772 7.2721 42 1 9.0567 -9.4089 7.4922 43 1 7.1948 -8.2013 9.3883 44 1 8.9192 -8.5910 9.6308 45 1 8.7198 -5.3416 7.3061 46 1 7.0996 -6.0865 7.4934 47 1 5.0076 -5.1598 1.2731 48 1 5.6825 -3.7063 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484264686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:55 Heat of formation + Delta-G solvation = -119.654078 kcal Electronic energy + Delta-G solvation = -29601.863554 eV Core-core repulsion = 25272.453700 eV Total energy + Delta-G solvation = -4329.409854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93901 -40.25618 -39.16094 -38.14195 -36.00569 -34.58579 -33.97920 -33.96047 -31.73236 -30.77698 -30.17904 -28.32861 -26.68297 -26.26511 -24.81716 -23.15979 -22.49084 -21.36896 -20.64174 -20.09352 -19.40488 -18.45248 -18.06451 -17.02824 -16.77651 -16.45891 -16.10319 -16.01212 -15.68407 -15.51436 -15.28076 -15.20455 -14.86934 -14.45342 -14.17584 -13.99457 -13.64464 -13.45620 -13.23411 -13.17403 -13.01870 -12.56805 -12.48140 -12.30227 -12.17802 -12.10382 -11.82716 -11.78516 -11.46279 -11.31682 -11.16283 -11.08677 -10.87973 -10.62476 -10.20328 -10.07210 -10.02595 -10.00448 -9.60177 -9.52560 -8.80832 -8.40252 -8.21278 -6.34291 -3.85869 2.23489 2.64065 2.99579 3.04548 3.12792 3.55463 3.58501 3.68823 3.88010 3.95998 4.07280 4.14122 4.26840 4.40514 4.41878 4.45504 4.58032 4.63251 4.86190 4.88975 4.95347 5.05364 5.13873 5.15819 5.16946 5.28386 5.32661 5.36598 5.36926 5.46970 5.48228 5.52127 5.60942 5.65344 5.71119 5.76718 5.87718 5.92275 6.02422 6.43144 6.50911 6.95195 7.00419 7.32110 7.54262 7.78857 8.10147 8.56154 8.91431 9.38660 9.78744 10.78727 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.002067 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.007729 B =13545.645719 C =14718.993067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.452 3.548 11 O -0.561 6.561 12 C 0.004 3.996 13 N -0.440 5.440 14 C 0.017 3.983 15 C 0.088 3.912 16 O -0.520 6.520 17 C 0.101 3.899 18 N -0.730 5.730 19 C 0.514 3.486 20 O -0.534 6.534 21 C -0.133 4.133 22 C -0.105 4.105 23 H 0.095 0.905 24 C -0.154 4.154 25 C 0.045 3.955 26 O -0.379 6.379 27 C 0.052 3.948 28 C -0.001 4.001 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.371 0.629 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.778 -14.846 11.910 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.237 3.763 11 O -0.442 6.442 12 C -0.128 4.128 13 N -0.162 5.162 14 C -0.112 4.112 15 C 0.045 3.955 16 O -0.325 6.325 17 C -0.024 4.024 18 N -0.384 5.384 19 C 0.300 3.700 20 O -0.411 6.411 21 C -0.173 4.173 22 C -0.125 4.125 23 H 0.113 0.887 24 C -0.192 4.192 25 C -0.032 4.032 26 O -0.298 6.298 27 C -0.024 4.024 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.218 0.782 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.122 0.878 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.696 -14.615 11.222 26.971 hybrid contribution 0.146 1.183 0.745 1.405 sum 19.841 -13.432 11.967 26.783 Atomic orbital electron populations 1.69617 1.05635 1.27536 1.49253 1.25045 0.95510 0.98004 0.97629 0.86668 0.79720 0.84021 0.78944 1.19553 1.20150 1.19568 1.19416 0.79181 0.96615 1.48151 0.86301 1.42214 1.07566 1.06111 1.67106 1.19548 0.87855 0.84639 0.84209 1.90564 1.69291 1.30859 1.53503 1.22553 0.96318 0.91774 1.02148 1.68472 1.04003 1.13450 1.30304 1.24136 0.93024 0.94800 0.99258 1.23051 0.95462 0.86117 0.90829 1.86657 1.93385 1.14091 1.38353 1.22033 1.00119 0.89985 0.90228 1.45934 1.43801 1.29557 1.19097 1.20671 0.81149 0.86876 0.81259 1.90723 1.32324 1.46127 1.71905 1.21694 1.02255 0.97632 0.95756 1.22483 1.01486 0.95084 0.93401 0.88696 1.23029 1.02952 0.98194 0.94978 1.23140 1.00689 0.82639 0.96720 1.88903 1.85253 1.23649 1.32016 1.23705 0.99786 0.98117 0.80784 1.24557 0.96902 0.99605 0.91989 0.91580 0.79712 0.92634 0.88749 0.89887 0.88044 0.78193 0.90248 0.90069 0.76584 0.88242 0.88127 0.90291 0.90211 0.92380 0.89929 0.87817 0.92397 0.88087 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.18 7.59 -10.99 -0.08 10.09 16 11 O -0.56 -14.87 15.13 5.54 0.08 -14.79 16 12 C 0.00 0.07 5.31 -4.98 -0.03 0.04 16 13 N -0.44 -6.87 5.95 -239.64 -1.43 -8.29 16 14 C 0.02 0.19 7.38 -2.77 -0.02 0.17 16 15 C 0.09 0.91 1.57 -89.69 -0.14 0.77 16 16 O -0.52 -5.50 13.51 -35.23 -0.48 -5.98 16 17 C 0.10 0.88 5.32 -4.04 -0.02 0.86 16 18 N -0.73 -5.13 5.33 -60.30 -0.32 -5.45 16 19 C 0.51 4.28 7.65 -10.99 -0.08 4.19 16 20 O -0.53 -6.51 14.75 5.56 0.08 -6.42 16 21 C -0.13 -0.69 5.10 -27.89 -0.14 -0.83 16 22 C -0.11 -0.72 2.68 -88.62 -0.24 -0.96 16 23 H 0.09 0.77 7.97 -51.93 -0.41 0.36 16 24 C -0.15 -0.79 6.60 -25.21 -0.17 -0.95 16 25 C 0.05 0.31 7.70 37.73 0.29 0.60 16 26 O -0.38 -3.94 11.52 -35.23 -0.41 -4.35 16 27 C 0.05 0.47 6.56 38.21 0.25 0.72 16 28 C 0.00 -0.02 6.15 -2.77 -0.02 -0.04 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 31 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.37 2.35 7.39 45.56 0.34 2.69 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.77 7.98 -51.93 -0.41 0.36 16 38 H 0.40 1.82 7.13 -40.82 -0.29 1.53 16 39 H 0.10 0.39 8.04 -51.93 -0.42 -0.03 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.29 7.86 -51.93 -0.41 -0.11 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 1.10 7.30 -51.92 -0.38 0.72 16 46 H 0.06 0.48 7.98 -51.93 -0.41 0.06 16 47 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 48 H 0.07 1.00 7.63 -51.92 -0.40 0.60 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -37.19 390.22 -7.99 -45.18 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.77 Total: 11.55 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.65 Total: 6.97 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -1.03 Total: -52.58 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.72 Total: -31.54 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.19 -7.99 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484264686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.475 kcal (2) G-P(sol) polarization free energy of solvation -37.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds