Wall clock time and date at job start Sat Apr 11 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 120.00196 * 2 1 4 4 H 1.48499 * 109.47054 * 239.99908 * 3 2 1 5 5 H 1.48497 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46968 * 120.00164 * 3 2 1 7 7 C 1.38955 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00333 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99748 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99886 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00175 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99840 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47102 * 180.15010 * 12 10 9 14 14 C 1.47011 * 110.99916 * 299.93056 * 13 12 10 15 15 C 1.53105 * 109.25960 * 182.39032 * 14 13 12 16 16 O 1.43012 * 109.25868 * 303.15647 * 15 14 13 17 17 C 1.43012 * 113.73860 * 58.66542 * 16 15 14 18 18 C 1.47007 * 111.00230 * 63.56762 * 13 12 10 19 19 H 1.09000 * 109.50748 * 297.54206 * 18 13 12 20 20 C 1.53001 * 109.50692 * 57.67197 * 18 13 12 21 21 N 1.46507 * 109.47183 * 54.31686 * 20 18 13 22 22 C 1.34766 * 120.00057 * 175.01451 * 21 20 18 23 23 O 1.21285 * 120.00110 * 0.02562 * 22 21 20 24 24 C 1.50706 * 119.99984 * 179.97438 * 22 21 20 25 25 H 1.08996 * 109.86738 * 303.99992 * 24 22 21 26 26 C 1.54100 * 109.87549 * 65.00200 * 24 22 21 27 27 C 1.54813 * 104.18644 * 121.45366 * 26 24 22 28 28 C 1.54997 * 102.09079 * 20.88294 * 27 26 24 29 29 O 1.43749 * 109.87796 * 182.83347 * 24 22 21 30 30 H 0.97001 * 119.99931 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99645 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47087 * 60.15150 * 12 10 9 33 33 H 1.08997 * 109.47308 * 300.14630 * 12 10 9 34 34 H 1.08996 * 109.50902 * 302.32750 * 14 13 12 35 35 H 1.09004 * 109.50602 * 62.46131 * 14 13 12 36 36 H 1.09007 * 109.50320 * 63.08885 * 15 14 13 37 37 H 1.09001 * 109.50813 * 183.21653 * 15 14 13 38 38 H 1.09003 * 109.50728 * 181.39158 * 17 16 15 39 39 H 1.09005 * 109.50872 * 61.26693 * 17 16 15 40 40 H 1.09001 * 109.47238 * 174.31556 * 20 18 13 41 41 H 1.08994 * 109.47378 * 294.31886 * 20 18 13 42 42 H 0.96996 * 119.99563 * 355.01949 * 21 20 18 43 43 H 1.08995 * 110.48715 * 240.13009 * 26 24 22 44 44 H 1.08998 * 110.48734 * 2.77967 * 26 24 22 45 45 H 1.08997 * 110.90464 * 139.07277 * 27 26 24 46 46 H 1.08997 * 110.90935 * 262.64666 * 27 26 24 47 47 H 1.08994 * 110.62404 * 81.47343 * 28 27 26 48 48 H 1.09005 * 110.61913 * 204.31859 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 7 2.1981 -5.9795 0.0046 14 6 3.0632 -5.9368 -1.1832 15 6 3.9997 -7.1480 -1.1698 16 8 4.7508 -7.1500 0.0472 17 6 3.9396 -7.1918 1.2243 18 6 3.0026 -5.9811 1.2351 19 1 3.5917 -5.0655 1.2860 20 6 2.0768 -6.0624 2.4506 21 7 1.1928 -7.2227 2.3145 22 6 0.3563 -7.5539 3.3179 23 8 0.3350 -6.8911 4.3334 24 6 -0.5535 -8.7471 3.1776 25 1 -1.1670 -8.6420 2.2829 26 6 0.2845 -10.0374 3.0898 27 6 -0.2105 -10.8931 4.2812 28 6 -1.5997 -10.2706 4.5730 29 8 -1.3929 -8.8609 4.3390 30 1 -0.4850 0.8401 0.0004 31 1 0.3532 -2.3906 0.0005 32 1 0.6186 -4.9220 -0.8900 33 1 0.6153 -4.9193 0.8900 34 1 2.4481 -5.9623 -2.0826 35 1 3.6533 -5.0204 -1.1710 36 1 3.4117 -8.0634 -1.2362 37 1 4.6816 -7.0903 -2.0183 38 1 4.5780 -7.1659 2.1074 39 1 3.3498 -8.1085 1.2276 40 1 2.6745 -6.1652 3.3563 41 1 1.4774 -5.1542 2.5121 42 1 1.2097 -7.7525 1.5022 43 1 0.0964 -10.5510 2.1470 44 1 1.3454 -9.8114 3.1972 45 1 -0.3062 -11.9404 3.9946 46 1 0.4526 -10.7856 5.1395 47 1 -2.3496 -10.6673 3.8888 48 1 -1.8917 -10.4515 5.6075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484585187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:05 Heat of formation + Delta-G solvation = -144.167424 kcal Electronic energy + Delta-G solvation = -31413.972245 eV Core-core repulsion = 27083.499412 eV Total energy + Delta-G solvation = -4330.472833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59023 -39.94940 -38.34709 -37.96211 -35.71605 -34.49524 -33.69005 -32.50668 -31.43352 -31.39842 -29.83603 -28.94238 -26.51099 -25.45022 -23.84756 -23.73897 -22.37048 -22.04027 -20.60004 -19.98014 -19.17169 -17.99214 -17.71287 -16.82147 -16.48165 -16.40220 -16.09409 -15.99271 -15.37413 -15.12963 -14.86151 -14.67012 -14.45937 -14.32247 -14.09195 -13.98697 -13.86298 -13.69814 -13.36821 -13.18252 -12.69497 -12.11134 -12.02430 -11.99068 -11.82522 -11.60358 -11.59344 -11.56825 -11.25740 -11.22766 -10.96363 -10.70686 -10.51811 -10.41579 -10.32077 -10.28483 -9.60981 -9.55683 -9.47206 -9.33244 -8.92968 -8.06485 -7.59517 -6.50817 -3.92523 2.61046 2.91328 3.13292 3.21159 3.25047 3.72705 3.77538 3.93671 4.06264 4.10585 4.17856 4.46704 4.52847 4.71179 4.85040 4.86627 4.93721 4.97557 5.09535 5.13393 5.22294 5.26561 5.32194 5.33973 5.41223 5.44056 5.50157 5.54583 5.66467 5.67821 5.75736 5.83129 5.84356 5.97505 6.05577 6.11337 6.28011 6.46465 6.53877 6.60844 7.08920 7.13830 7.26750 7.45990 7.57299 7.94129 8.27266 8.48173 9.06660 9.41751 9.91336 10.65434 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.003070 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.458232 B = 9117.216708 C =10793.419831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.103 0.897 9 N -0.551 5.551 10 C 0.403 3.597 11 O -0.593 6.593 12 C 0.036 3.964 13 N -0.507 5.507 14 C -0.004 4.004 15 C 0.069 3.931 16 O -0.382 6.382 17 C 0.076 3.924 18 C 0.018 3.982 19 H 0.108 0.892 20 C 0.129 3.871 21 N -0.714 5.714 22 C 0.508 3.492 23 O -0.524 6.524 24 C 0.061 3.939 25 H 0.095 0.905 26 C -0.147 4.147 27 C -0.154 4.154 28 C 0.043 3.957 29 O -0.347 6.347 30 H 0.274 0.726 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -22.408 1.579 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.481 6.481 12 C -0.096 4.096 13 N -0.231 5.231 14 C -0.132 4.132 15 C -0.008 4.008 16 O -0.301 6.301 17 C -0.001 4.001 18 C -0.090 4.090 19 H 0.125 0.875 20 C 0.006 3.994 21 N -0.369 5.369 22 C 0.292 3.708 23 O -0.399 6.399 24 C -0.001 4.001 25 H 0.113 0.887 26 C -0.185 4.185 27 C -0.192 4.192 28 C -0.033 4.033 29 O -0.265 6.265 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.242 0.758 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.792 -21.999 2.438 22.148 hybrid contribution -0.161 1.320 -0.615 1.465 sum -0.954 -20.679 1.823 20.781 Atomic orbital electron populations 1.69597 1.06007 1.28564 1.49420 1.25307 0.95625 0.99909 0.96834 0.85911 0.78825 0.80341 0.79136 1.19844 1.20855 1.19794 1.19668 0.93369 0.82313 1.48117 0.87929 1.42048 1.09339 1.04960 1.62203 1.20938 0.88790 0.85870 0.85543 1.90404 1.13785 1.86714 1.57212 1.22111 0.95413 0.88348 1.03726 1.62709 1.17435 1.40913 1.02070 1.23092 0.96415 1.00909 0.92778 1.22629 0.94237 0.96911 0.87066 1.87980 1.33228 1.94867 1.13979 1.22600 0.93017 0.96082 0.88409 1.22860 0.94870 1.01735 0.89583 0.87454 1.21396 0.91950 0.88699 0.97387 1.45861 1.40308 1.31521 1.19213 1.20419 0.80926 0.85719 0.83703 1.90739 1.67440 1.52519 1.29170 1.22630 0.92211 0.94129 0.91124 0.88709 1.22947 1.01056 0.94412 1.00068 1.23144 0.97451 0.99946 0.98629 1.23631 0.96311 0.81216 1.02176 1.89035 1.67908 1.23667 1.45858 0.91592 0.77363 0.89149 0.89007 0.90660 0.88817 0.93295 0.88962 0.88877 0.93236 0.90743 0.90905 0.75792 0.89469 0.89849 0.89808 0.90208 0.91852 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 10 C 0.40 8.80 7.17 -10.99 -0.08 8.72 16 11 O -0.59 -14.52 11.13 5.55 0.06 -14.45 16 12 C 0.04 0.58 5.52 -4.98 -0.03 0.56 16 13 N -0.51 -7.27 4.09 -227.78 -0.93 -8.20 16 14 C 0.00 -0.06 5.26 -3.71 -0.02 -0.08 16 15 C 0.07 0.86 7.01 37.21 0.26 1.12 16 16 O -0.38 -5.57 10.83 -35.23 -0.38 -5.96 16 17 C 0.08 0.97 6.20 37.21 0.23 1.20 16 18 C 0.02 0.27 1.90 -67.60 -0.13 0.14 16 19 H 0.11 2.05 5.72 -51.93 -0.30 1.76 16 20 C 0.13 1.84 4.67 -4.04 -0.02 1.82 16 21 N -0.71 -8.44 5.02 -60.29 -0.30 -8.75 16 22 C 0.51 6.98 6.95 -10.99 -0.08 6.90 16 23 O -0.52 -9.81 16.52 -14.02 -0.23 -10.04 16 24 C 0.06 0.63 3.84 -27.31 -0.10 0.53 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 26 C -0.15 -1.05 6.61 -25.20 -0.17 -1.21 16 27 C -0.15 -1.02 7.15 -24.72 -0.18 -1.19 16 28 C 0.04 0.35 7.72 38.21 0.29 0.64 16 29 O -0.35 -4.42 10.74 -54.81 -0.59 -5.01 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.46 6.20 -51.93 -0.32 1.14 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.80 5.42 -51.93 -0.28 1.52 16 36 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.53 7.26 -51.93 -0.38 0.15 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 42 H 0.41 3.97 7.42 -40.82 -0.30 3.67 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -33.31 380.14 -8.48 -41.79 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -7.23 Total: 14.63 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.25 Total: 11.30 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.57 Total: -53.82 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.14 Total: -35.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.31 -8.48 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484585187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.375 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds