Wall clock time and date at job start Sat Apr 11 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86796 * 120.00341 * 2 1 4 4 H 1.48505 * 109.47274 * 270.00134 * 3 2 1 5 5 H 1.48506 * 109.47039 * 30.00369 * 3 2 1 6 6 H 1.48502 * 109.47297 * 150.00428 * 3 2 1 7 7 C 1.38955 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99472 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00477 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99729 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47107 * 174.46994 * 12 10 9 14 14 C 1.47023 * 111.03831 * 300.97802 * 13 12 10 15 15 C 1.53090 * 109.29547 * 182.35046 * 14 13 12 16 16 O 1.43015 * 109.25809 * 303.17824 * 15 14 13 17 17 C 1.43010 * 113.74337 * 58.66839 * 16 15 14 18 18 C 1.47011 * 111.00283 * 64.63739 * 13 12 10 19 19 H 1.09002 * 109.50576 * 297.59081 * 18 13 12 20 20 C 1.53007 * 109.50490 * 57.67238 * 18 13 12 21 21 N 1.46499 * 109.47048 * 54.27948 * 20 18 13 22 22 C 1.34780 * 119.99871 * 174.95354 * 21 20 18 23 23 O 1.21280 * 119.99803 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.00150 * 180.02562 * 22 21 20 25 25 H 1.08998 * 110.27243 * 54.35503 * 24 22 21 26 26 C 1.54956 * 110.38920 * 292.21495 * 24 22 21 27 27 C 1.55308 * 100.93666 * 204.59322 * 26 24 22 28 28 C 1.54384 * 102.25340 * 34.13627 * 27 26 24 29 29 O 1.43239 * 107.58531 * 338.63827 * 28 27 26 30 30 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00101 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47436 * 54.47254 * 12 10 9 33 33 H 1.08998 * 109.47385 * 294.47280 * 12 10 9 34 34 H 1.09000 * 109.46743 * 62.41177 * 14 13 12 35 35 H 1.09004 * 109.53780 * 302.33031 * 14 13 12 36 36 H 1.09001 * 109.50750 * 183.24080 * 15 14 13 37 37 H 1.09002 * 109.54402 * 63.12485 * 15 14 13 38 38 H 1.09000 * 109.50849 * 181.39428 * 17 16 15 39 39 H 1.08997 * 109.50674 * 61.26453 * 17 16 15 40 40 H 1.08999 * 109.47275 * 294.27904 * 20 18 13 41 41 H 1.09000 * 109.46974 * 174.28058 * 20 18 13 42 42 H 0.96995 * 120.00137 * 354.95413 * 21 20 18 43 43 H 1.08998 * 111.12417 * 86.67957 * 26 24 22 44 44 H 1.08991 * 111.12489 * 322.51276 * 26 24 22 45 45 H 1.08990 * 110.84976 * 275.94080 * 27 26 24 46 46 H 1.08998 * 110.84080 * 152.32151 * 27 26 24 47 47 H 1.08994 * 109.83460 * 98.15203 * 28 27 26 48 48 H 1.09004 * 109.82909 * 219.12805 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1925 -5.9762 -0.1367 14 6 2.9707 -5.8592 -1.3786 15 6 3.9026 -7.0669 -1.5073 16 8 4.7387 -7.1431 -0.3495 17 6 4.0137 -7.2595 0.8776 18 6 3.0829 -6.0536 1.0305 19 1 3.6763 -5.1417 1.0967 20 6 2.2461 -6.2120 2.3017 21 7 1.3505 -7.3622 2.1566 22 6 0.5876 -7.7574 3.1950 23 8 0.6429 -7.1611 4.2496 24 6 -0.3334 -8.9409 3.0460 25 1 0.2234 -9.8114 2.6992 26 6 -1.4826 -8.6100 2.0607 27 6 -2.5753 -9.6054 2.5375 28 6 -2.3272 -9.6596 4.0603 29 8 -0.9814 -9.2288 4.2951 30 1 -0.4849 0.8401 0.0004 31 1 0.3532 -2.3906 -0.0005 32 1 0.5443 -4.8785 -0.8383 33 1 0.6936 -4.9654 0.9333 34 1 3.5623 -4.9441 -1.3518 35 1 2.2931 -5.8296 -2.2320 36 1 4.5222 -6.9554 -2.3971 37 1 3.3097 -7.9780 -1.5885 38 1 4.7136 -7.2872 1.7127 39 1 3.4234 -8.1757 0.8662 40 1 1.6559 -5.3100 2.4629 41 1 2.9067 -6.3711 3.1540 42 1 1.3065 -7.8393 1.3133 43 1 -1.1882 -8.8135 1.0312 44 1 -1.8140 -7.5781 2.1760 45 1 -2.4300 -10.5865 2.0856 46 1 -3.5717 -9.2207 2.3203 47 1 -3.0229 -8.9948 4.5722 48 1 -2.4567 -10.6804 4.4200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484585189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:09 Heat of formation + Delta-G solvation = -145.322052 kcal Electronic energy + Delta-G solvation = -31449.747867 eV Core-core repulsion = 27119.224966 eV Total energy + Delta-G solvation = -4330.522901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.56044 -39.94061 -38.38679 -37.97110 -35.72450 -34.49003 -33.70447 -32.50647 -31.45817 -31.39827 -29.87336 -28.95485 -26.54433 -25.47293 -23.79811 -23.74330 -22.35006 -21.98669 -20.58524 -19.99867 -19.18251 -17.99146 -17.78796 -17.01571 -16.51480 -16.19889 -16.10739 -15.75573 -15.60446 -15.09338 -14.90481 -14.74344 -14.61818 -14.22418 -14.09987 -13.86321 -13.77134 -13.58761 -13.43466 -13.20056 -12.64529 -12.19534 -12.05109 -11.98753 -11.88930 -11.69587 -11.60754 -11.58731 -11.25701 -11.24095 -10.98063 -10.71945 -10.48585 -10.41709 -10.29934 -10.14349 -9.60818 -9.56328 -9.46269 -9.33666 -8.93278 -8.07944 -7.61551 -6.52621 -3.94101 2.59882 2.87957 3.09895 3.20700 3.26257 3.70804 3.77499 3.93626 4.05236 4.09310 4.12183 4.48925 4.56745 4.79712 4.81241 4.84428 4.92511 4.97494 5.04200 5.12143 5.21646 5.31835 5.34685 5.37452 5.44604 5.48267 5.49306 5.53199 5.67453 5.75426 5.76192 5.81167 5.82611 5.96865 6.04417 6.10103 6.29128 6.48543 6.58016 6.65202 7.07840 7.12668 7.26883 7.44742 7.56935 7.92844 8.26612 8.46555 9.05311 9.40159 9.89730 10.63733 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.003251 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.588675 B = 8611.344842 C =10311.626294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.403 3.597 11 O -0.593 6.593 12 C 0.036 3.964 13 N -0.507 5.507 14 C -0.002 4.002 15 C 0.069 3.931 16 O -0.382 6.382 17 C 0.076 3.924 18 C 0.017 3.983 19 H 0.112 0.888 20 C 0.130 3.870 21 N -0.713 5.713 22 C 0.508 3.492 23 O -0.524 6.524 24 C 0.065 3.935 25 H 0.095 0.905 26 C -0.145 4.145 27 C -0.154 4.154 28 C 0.048 3.952 29 O -0.355 6.355 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.406 0.594 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -20.167 -0.642 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.480 6.480 12 C -0.095 4.095 13 N -0.231 5.231 14 C -0.129 4.129 15 C -0.008 4.008 16 O -0.301 6.301 17 C -0.002 4.002 18 C -0.092 4.092 19 H 0.129 0.871 20 C 0.006 3.994 21 N -0.368 5.368 22 C 0.292 3.708 23 O -0.399 6.399 24 C 0.004 3.996 25 H 0.112 0.888 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.029 4.029 29 O -0.274 6.274 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.242 0.758 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.303 -19.973 0.314 20.247 hybrid contribution -0.396 1.477 -0.627 1.653 sum -3.699 -18.496 -0.312 18.865 Atomic orbital electron populations 1.69606 1.06009 1.28438 1.49588 1.25302 0.95627 0.99906 0.96854 0.85855 0.79317 0.80682 0.78449 1.20324 1.20794 1.19338 1.19720 0.93408 0.82303 1.47944 0.87873 1.42048 1.09312 1.04968 1.62284 1.20946 0.88807 0.85873 0.85500 1.90414 1.13785 1.86726 1.57113 1.22109 0.95461 0.88403 1.03576 1.62697 1.17561 1.40660 1.02207 1.23036 0.97240 1.00637 0.92034 1.22618 0.92909 0.96871 0.88435 1.87982 1.33236 1.94377 1.14457 1.22609 0.94393 0.95988 0.87171 1.22905 0.94679 1.01782 0.89844 0.87100 1.21399 0.92208 0.88750 0.97047 1.45861 1.42755 1.33151 1.15036 1.20414 0.80920 0.85265 0.84191 1.90738 1.66031 1.55705 1.27473 1.22818 0.94630 0.96261 0.85873 0.88790 1.23249 0.94105 1.01278 0.99641 1.23130 1.00272 1.00190 0.95578 1.23211 0.84079 0.99958 0.95630 1.88533 1.24895 1.87106 1.26827 0.91667 0.77398 0.89247 0.88982 0.89277 0.90602 0.88956 0.93240 0.88823 0.93222 0.90977 0.90698 0.75808 0.88751 0.89502 0.90170 0.89519 0.90998 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.10 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 10 C 0.40 8.70 7.16 -10.99 -0.08 8.62 16 11 O -0.59 -14.41 11.16 5.55 0.06 -14.35 16 12 C 0.04 0.58 5.56 -4.98 -0.03 0.55 16 13 N -0.51 -7.14 4.09 -227.77 -0.93 -8.07 16 14 C 0.00 -0.02 5.25 -3.71 -0.02 -0.04 16 15 C 0.07 0.86 7.01 37.20 0.26 1.12 16 16 O -0.38 -5.60 10.83 -35.23 -0.38 -5.98 16 17 C 0.08 0.97 6.21 37.21 0.23 1.20 16 18 C 0.02 0.25 1.91 -67.60 -0.13 0.12 16 19 H 0.11 2.11 5.62 -51.93 -0.29 1.82 16 20 C 0.13 1.83 4.67 -4.04 -0.02 1.81 16 21 N -0.71 -8.33 5.05 -60.29 -0.30 -8.63 16 22 C 0.51 6.91 7.18 -10.98 -0.08 6.83 16 23 O -0.52 -9.75 16.55 -13.77 -0.23 -9.98 16 24 C 0.07 0.68 3.86 -26.85 -0.10 0.57 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 C -0.14 -1.13 6.56 -24.47 -0.16 -1.29 16 27 C -0.15 -0.98 7.02 -24.78 -0.17 -1.16 16 28 C 0.05 0.41 7.79 37.88 0.30 0.71 16 29 O -0.36 -4.53 10.61 -54.56 -0.58 -5.11 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.42 6.14 -51.93 -0.32 1.11 16 34 H 0.09 1.70 5.54 -51.93 -0.29 1.41 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.54 7.27 -51.93 -0.38 0.16 16 40 H 0.07 1.19 6.60 -51.93 -0.34 0.84 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.41 3.90 7.43 -40.82 -0.30 3.59 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -33.03 380.55 -8.47 -41.50 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.25 Total: 14.41 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.24 Total: 11.27 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.57 Total: -53.16 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.13 Total: -35.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.03 -8.47 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484585189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.821 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds