Wall clock time and date at job start Sat Apr 11 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47414 * 270.00015 * 3 2 1 5 5 H 1.48502 * 109.47029 * 30.00207 * 3 2 1 6 6 H 1.48507 * 109.47237 * 149.99927 * 3 2 1 7 7 C 1.38953 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00468 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99808 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00134 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99936 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46814 * 180.02562 * 12 10 9 14 14 C 1.47012 * 111.00520 * 287.69305 * 13 12 10 15 15 C 1.53093 * 109.26094 * 177.60978 * 14 13 12 16 16 O 1.43015 * 109.25877 * 56.85132 * 15 14 13 17 17 C 1.43016 * 113.73682 * 301.32908 * 16 15 14 18 18 C 1.47020 * 110.99779 * 164.06008 * 13 12 10 19 19 H 1.08996 * 109.54247 * 62.43728 * 18 13 12 20 20 C 1.52995 * 109.50869 * 302.32904 * 18 13 12 21 21 N 1.46509 * 109.46860 * 306.10389 * 20 18 13 22 22 C 1.34775 * 119.99732 * 184.97728 * 21 20 18 23 23 O 1.21279 * 120.00392 * 0.02562 * 22 21 20 24 24 C 1.50700 * 119.99719 * 180.02562 * 22 21 20 25 25 H 1.09004 * 109.86949 * 303.99317 * 24 22 21 26 26 C 1.54093 * 109.88064 * 65.00191 * 24 22 21 27 27 C 1.54812 * 104.19288 * 121.45453 * 26 24 22 28 28 C 1.55000 * 102.09122 * 20.87695 * 27 26 24 29 29 O 1.43746 * 109.87989 * 182.83167 * 24 22 21 30 30 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00336 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47189 * 60.00457 * 12 10 9 33 33 H 1.09003 * 109.47209 * 299.99994 * 12 10 9 34 34 H 1.09004 * 109.50358 * 57.67149 * 14 13 12 35 35 H 1.09004 * 109.50761 * 297.55157 * 14 13 12 36 36 H 1.09001 * 109.50559 * 296.91142 * 15 14 13 37 37 H 1.09003 * 109.50573 * 176.78960 * 15 14 13 38 38 H 1.08997 * 109.50607 * 298.73334 * 17 16 15 39 39 H 1.09000 * 109.50414 * 178.60564 * 17 16 15 40 40 H 1.08998 * 109.47159 * 186.10852 * 20 18 13 41 41 H 1.08996 * 109.47421 * 66.10368 * 20 18 13 42 42 H 0.96994 * 120.00174 * 4.97862 * 21 20 18 43 43 H 1.09005 * 110.48945 * 240.13139 * 26 24 22 44 44 H 1.09006 * 110.49280 * 2.64359 * 26 24 22 45 45 H 1.08996 * 110.90989 * 139.07696 * 27 26 24 46 46 H 1.09006 * 110.90346 * 262.65000 * 27 26 24 47 47 H 1.08997 * 110.61584 * 81.47857 * 28 27 26 48 48 H 1.08995 * 110.62143 * 204.31928 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 2.8578 -6.1096 -1.3058 15 6 3.8844 -7.2435 -1.2430 16 8 3.2298 -8.4509 -0.8444 17 6 2.5774 -8.3601 0.4250 18 6 1.5375 -7.2374 0.3791 19 1 0.7708 -7.4814 -0.3561 20 6 0.8924 -7.0820 1.7577 21 7 1.8967 -6.6155 2.7170 22 6 1.5804 -6.5025 4.0222 23 8 0.4647 -6.7874 4.4028 24 6 2.6132 -6.0222 5.0089 25 1 3.4983 -6.6563 4.9570 26 6 2.9957 -4.5622 4.6981 27 6 2.6583 -3.7960 6.0003 28 6 2.6466 -4.9338 7.0528 29 8 2.0678 -6.0472 6.3386 30 1 -0.4850 0.8400 0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.6168 -4.9210 -0.8886 33 1 0.6173 -4.9205 0.8914 34 1 3.3619 -5.1754 -1.5537 35 1 2.1125 -6.3351 -2.0686 36 1 4.6593 -6.9932 -0.5185 37 1 4.3352 -7.3812 -2.2259 38 1 3.3143 -8.1423 1.1981 39 1 2.0829 -9.3053 0.6486 40 1 0.4971 -8.0438 2.0844 41 1 0.0810 -6.3565 1.6995 42 1 2.7891 -6.3880 2.4128 43 1 4.0600 -4.4857 4.4753 44 1 2.4043 -4.1818 3.8652 45 1 3.4298 -3.0613 6.2304 46 1 1.6798 -3.3208 5.9296 47 1 3.6610 -5.1697 7.3742 48 1 2.0283 -4.6598 7.9075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484585191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:12 Heat of formation + Delta-G solvation = -145.976373 kcal Electronic energy + Delta-G solvation = -31712.505899 eV Core-core repulsion = 27381.954624 eV Total energy + Delta-G solvation = -4330.551275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.51101 -39.81167 -38.24499 -38.03445 -35.93992 -34.46394 -33.79234 -32.31342 -31.45506 -31.30601 -29.74520 -29.02120 -26.61288 -25.58838 -23.86454 -23.68195 -22.45946 -21.78945 -20.54740 -19.87890 -19.23344 -17.94726 -17.68399 -16.87792 -16.54274 -16.37688 -16.04436 -15.88900 -15.29773 -15.08575 -15.04904 -14.72969 -14.47196 -14.26399 -14.15886 -13.77456 -13.68829 -13.67415 -13.36739 -13.28005 -12.80186 -12.32418 -12.04597 -11.83941 -11.75763 -11.66068 -11.58362 -11.41153 -11.32323 -11.19509 -10.96325 -10.90576 -10.53599 -10.45179 -10.28264 -10.18173 -9.74544 -9.54845 -9.44483 -8.96488 -8.60365 -8.10029 -8.01356 -6.47533 -3.88867 2.67164 2.93275 3.12341 3.21874 3.26410 3.65697 3.80665 3.82999 3.97893 4.15075 4.43681 4.61276 4.63067 4.73150 4.75650 4.92312 4.92678 5.01129 5.05761 5.16199 5.17380 5.27211 5.28530 5.36657 5.47665 5.52826 5.56553 5.57419 5.63519 5.72755 5.72969 5.76017 5.86864 5.94044 6.00587 6.02116 6.09081 6.18497 6.43881 6.65796 7.00499 7.00643 7.14804 7.48762 7.59284 7.99037 8.29372 8.54323 9.11431 9.47568 9.98337 10.69967 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.004583 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.989542 B = 6108.574042 C = 8965.128263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.038 3.962 13 N -0.506 5.506 14 C 0.022 3.978 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.073 3.927 18 C 0.031 3.969 19 H 0.065 0.935 20 C 0.129 3.871 21 N -0.714 5.714 22 C 0.514 3.486 23 O -0.529 6.529 24 C 0.062 3.938 25 H 0.092 0.908 26 C -0.147 4.147 27 C -0.153 4.153 28 C 0.045 3.955 29 O -0.350 6.350 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.412 0.588 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -12.989 5.160 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.093 4.093 13 N -0.232 5.232 14 C -0.106 4.106 15 C -0.012 4.012 16 O -0.306 6.306 17 C -0.004 4.004 18 C -0.078 4.078 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.369 5.369 22 C 0.299 3.701 23 O -0.404 6.404 24 C 0.001 3.999 25 H 0.110 0.890 26 C -0.185 4.185 27 C -0.191 4.191 28 C -0.032 4.032 29 O -0.268 6.268 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.249 0.751 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.988 -13.253 5.757 15.286 hybrid contribution -0.411 1.382 -0.781 1.639 sum 4.577 -11.871 4.976 13.662 Atomic orbital electron populations 1.69609 1.05954 1.28236 1.50266 1.25261 0.95601 0.99723 0.97258 0.85881 0.79228 0.80906 0.78405 1.20411 1.20912 1.19427 1.19659 0.93265 0.82131 1.47843 0.87930 1.41873 1.09198 1.04612 1.64225 1.19631 0.88364 0.84334 0.84656 1.90493 1.13499 1.86935 1.55385 1.22002 0.94084 0.91253 1.01960 1.61783 1.29775 1.01665 1.29993 1.22862 0.97395 1.01345 0.89007 1.22699 0.94298 0.83402 1.00777 1.87963 1.70843 1.35185 1.36593 1.22634 0.94105 0.97491 0.86197 1.22658 0.96917 0.91897 0.96326 0.91686 1.21343 0.91204 1.00426 0.86595 1.45786 1.16753 1.68029 1.06339 1.20436 0.89006 0.77821 0.82882 1.90703 1.22189 1.48700 1.78846 1.22597 0.94809 0.98208 0.84310 0.89013 1.22936 1.03456 0.92307 0.99769 1.23133 1.03492 0.98376 0.94095 1.23634 0.98585 0.85349 0.95620 1.88974 1.67606 1.49116 1.21121 0.91808 0.77560 0.93143 0.88996 0.87460 0.94635 0.91971 0.88614 0.92267 0.88506 0.90459 0.90984 0.75131 0.89380 0.89227 0.89687 0.90090 0.91963 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 8 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 9 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.44 9.64 7.51 -10.98 -0.08 9.56 16 11 O -0.58 -14.05 14.43 5.54 0.08 -13.97 16 12 C 0.04 0.62 5.30 -4.98 -0.03 0.60 16 13 N -0.51 -7.20 3.48 -227.78 -0.79 -7.99 16 14 C 0.02 0.31 5.31 -3.71 -0.02 0.29 16 15 C 0.07 0.78 7.01 37.21 0.26 1.04 16 16 O -0.39 -4.81 10.83 -35.23 -0.38 -5.19 16 17 C 0.07 0.78 6.21 37.21 0.23 1.01 16 18 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 20 C 0.13 1.54 4.72 -4.04 -0.02 1.52 16 21 N -0.71 -9.01 5.02 -60.29 -0.30 -9.32 16 22 C 0.51 7.60 6.95 -10.99 -0.08 7.52 16 23 O -0.53 -9.90 16.52 -14.02 -0.23 -10.13 16 24 C 0.06 0.79 3.84 -27.31 -0.10 0.68 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.15 -1.78 6.61 -25.21 -0.17 -1.95 16 27 C -0.15 -1.71 7.15 -24.72 -0.18 -1.88 16 28 C 0.04 0.47 7.72 38.21 0.29 0.77 16 29 O -0.35 -5.03 10.74 -54.81 -0.59 -5.62 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 32 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.09 1.45 5.65 -51.93 -0.29 1.16 16 34 H 0.11 1.81 6.42 -51.93 -0.33 1.48 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.62 7.29 -51.93 -0.38 0.24 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 42 H 0.41 5.02 7.44 -40.82 -0.30 4.72 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.31 7.69 -51.93 -0.40 0.91 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -32.46 385.99 -8.40 -40.86 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -7.36 Total: 15.17 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -0.28 Total: 11.77 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.43 Total: -54.12 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.12 Total: -34.90 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.46 -8.40 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484585191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.113 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds