Wall clock time and date at job start Sat Apr 11 2020 06:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48504 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47219 * 299.99750 * 3 2 1 6 6 H 1.48495 * 109.47283 * 60.00053 * 3 2 1 7 7 C 1.38816 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99724 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99655 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47356 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.44613 * 65.03308 * 11 10 9 13 13 C 1.53032 * 109.46471 * 185.00065 * 11 10 9 14 14 C 1.53189 * 109.31609 * 181.38561 * 13 11 10 15 15 N 1.46923 * 108.77305 * 305.36653 * 14 13 11 16 16 C 1.34776 * 120.62732 * 233.58158 * 15 14 13 17 17 O 1.21280 * 120.00537 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99924 * 180.02562 * 16 15 14 19 19 H 1.09002 * 110.33250 * 304.30022 * 18 16 15 20 20 C 1.54481 * 110.46687 * 66.61512 * 18 16 15 21 21 C 1.54506 * 104.06328 * 142.85817 * 20 18 16 22 22 C 1.54477 * 104.06393 * 359.97438 * 21 20 18 23 23 H 1.08998 * 110.37477 * 94.85232 * 22 21 20 24 24 C 1.50698 * 110.46533 * 217.14293 * 22 21 20 25 25 N 1.34773 * 120.00275 * 291.88719 * 24 22 21 26 26 O 1.21290 * 120.00146 * 111.88968 * 24 22 21 27 27 O 1.44423 * 104.80156 * 336.01945 * 22 21 20 28 28 C 1.46925 * 118.74230 * 53.85880 * 15 14 13 29 29 C 1.53044 * 109.45812 * 305.07327 * 11 10 9 30 30 H 0.96994 * 119.99725 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00346 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46988 * 59.99636 * 10 9 7 33 33 H 1.08998 * 109.47126 * 299.99902 * 10 9 7 34 34 H 0.96708 * 114.00140 * 299.96642 * 12 11 10 35 35 H 1.09004 * 109.49674 * 61.43422 * 13 11 10 36 36 H 1.09003 * 109.52604 * 301.35686 * 13 11 10 37 37 H 1.08996 * 109.58748 * 185.57985 * 14 13 11 38 38 H 1.09005 * 109.70093 * 65.22060 * 14 13 11 39 39 H 1.08996 * 110.51209 * 261.50444 * 20 18 16 40 40 H 1.09006 * 110.50965 * 24.21157 * 20 18 16 41 41 H 1.09006 * 110.50783 * 241.35215 * 21 20 18 42 42 H 1.08992 * 110.51043 * 118.64729 * 21 20 18 43 43 H 0.97003 * 119.99608 * 0.02562 * 25 24 22 44 44 H 0.97001 * 120.00261 * 180.02562 * 25 24 22 45 45 H 1.09004 * 109.58384 * 65.92169 * 28 15 14 46 46 H 1.09001 * 109.58620 * 186.34764 * 28 15 14 47 47 H 1.09006 * 109.49569 * 298.55910 * 29 11 10 48 48 H 1.09002 * 109.50274 * 58.62440 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0638 -4.8198 -0.0031 12 8 0.3218 -4.8110 -1.2244 13 6 1.8250 -6.1415 0.1215 14 6 0.8292 -7.3050 0.0859 15 7 -0.1844 -7.0919 1.1279 16 6 -0.4417 -8.0488 2.0415 17 8 0.1662 -9.0978 2.0087 18 6 -1.4849 -7.8154 3.1038 19 1 -1.2599 -6.9068 3.6624 20 6 -2.8904 -7.7227 2.4696 21 6 -3.8113 -8.4234 3.4935 22 6 -2.8531 -8.8572 4.6249 23 1 -2.8376 -8.1085 5.4169 24 6 -3.2642 -10.1970 5.1788 25 7 -4.4139 -10.3155 5.8721 26 8 -2.5605 -11.1687 5.0008 27 8 -1.5567 -8.9499 3.9952 28 6 -0.9166 -5.8183 1.1514 29 6 0.1027 -4.6693 1.1783 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6847 -3.7153 0.8872 33 1 2.6846 -3.7138 -0.8928 34 1 -0.1864 -4.0012 -1.3700 35 1 2.3715 -6.1591 1.0644 36 1 2.5264 -6.2375 -0.7074 37 1 1.3546 -8.2415 0.2733 38 1 0.3465 -7.3459 -0.8906 39 1 -3.1840 -6.6808 2.3423 40 1 -2.9135 -8.2465 1.5139 41 1 -4.2897 -9.2936 3.0439 42 1 -4.5601 -7.7279 3.8723 43 1 -4.9768 -9.5385 6.0142 44 1 -4.6783 -11.1779 6.2290 45 1 -1.5385 -5.7379 0.2598 46 1 -1.5435 -5.7736 2.0420 47 1 0.6654 -4.7007 2.1114 48 1 -0.4218 -3.7168 1.1018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484960404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:20 Heat of formation + Delta-G solvation = -146.693141 kcal Electronic energy + Delta-G solvation = -30957.677688 eV Core-core repulsion = 26627.095332 eV Total energy + Delta-G solvation = -4330.582356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05683 -40.03749 -38.83841 -37.88297 -35.56346 -34.20360 -34.09235 -32.75180 -31.97245 -31.41389 -30.37701 -29.94087 -26.86804 -25.23152 -23.71932 -23.46148 -22.44434 -21.68677 -20.97057 -20.31989 -19.21228 -18.20705 -17.65141 -17.53202 -17.00438 -16.78622 -16.06798 -15.85874 -15.51324 -15.02578 -14.98218 -14.70233 -14.54744 -14.33513 -14.19101 -14.14512 -13.72140 -13.42582 -13.30876 -12.93547 -12.68666 -12.50294 -12.32099 -12.17831 -12.07564 -11.88056 -11.51607 -11.37217 -11.11174 -11.07579 -11.04365 -10.89410 -10.61051 -10.33988 -10.15172 -10.12719 -10.07741 -9.74002 -9.65338 -9.45916 -9.00311 -8.59273 -7.06293 -5.89501 -3.18151 2.18837 2.43018 2.55167 2.99045 3.36374 3.43232 3.44616 3.68986 3.94120 4.19929 4.32257 4.43292 4.48623 4.51248 4.58123 4.63852 4.75519 4.87282 4.98747 5.03319 5.08404 5.14803 5.22784 5.36200 5.40064 5.46145 5.48443 5.54273 5.59914 5.78203 5.82492 5.94338 5.99487 6.07069 6.13505 6.29969 6.34117 6.38320 6.54676 6.64944 6.66525 6.86411 7.33434 7.61383 7.85364 8.03050 8.11590 8.29674 9.40927 9.94157 10.28565 11.33419 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002353 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.203900 B =11896.985625 C =12785.546833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.127 3.873 11 C 0.130 3.870 12 O -0.561 6.561 13 C -0.117 4.117 14 C 0.120 3.880 15 N -0.603 5.603 16 C 0.520 3.480 17 O -0.521 6.521 18 C 0.055 3.945 19 H 0.101 0.899 20 C -0.144 4.144 21 C -0.142 4.142 22 C 0.052 3.948 23 H 0.100 0.900 24 C 0.522 3.478 25 N -0.853 5.853 26 O -0.514 6.514 27 O -0.314 6.314 28 C 0.108 3.892 29 C -0.158 4.158 30 H 0.255 0.745 31 H 0.380 0.620 32 H 0.026 0.974 33 H 0.030 0.970 34 H 0.382 0.618 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.402 0.598 44 H 0.406 0.594 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 -15.297 8.534 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.000 4.000 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.155 4.155 14 C -0.002 4.002 15 N -0.338 5.338 16 C 0.306 3.694 17 O -0.396 6.396 18 C -0.006 4.006 19 H 0.118 0.882 20 C -0.182 4.182 21 C -0.180 4.180 22 C -0.010 4.010 23 H 0.118 0.882 24 C 0.305 3.695 25 N -0.420 5.420 26 O -0.387 6.387 27 O -0.231 6.231 28 C -0.015 4.015 29 C -0.197 4.197 30 H 0.065 0.935 31 H 0.215 0.785 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.230 0.770 44 H 0.237 0.763 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.892 -17.045 8.263 21.850 hybrid contribution -0.646 2.017 0.369 2.150 sum -11.538 -15.027 8.631 20.820 Atomic orbital electron populations 1.69635 1.05081 1.25723 1.57904 1.24725 0.95574 0.97732 1.02805 0.86102 0.78852 0.83935 0.77207 1.20549 1.21804 1.21833 1.19258 0.91152 0.83983 1.42624 0.91085 1.42333 1.05542 1.00019 1.89700 1.21336 0.93930 0.85960 0.98812 1.21281 0.91141 0.94860 0.83779 1.86380 1.65770 1.44433 1.40210 1.21854 0.97643 0.92906 1.03142 1.21535 0.89339 0.98892 0.90400 1.48039 1.39624 1.16038 1.30138 1.20011 0.83556 0.83894 0.81942 1.90737 1.50237 1.25669 1.72978 1.22945 0.95220 0.91106 0.91334 0.88187 1.23018 0.92337 1.02841 1.00019 1.22921 0.98139 1.01732 0.95181 1.22916 0.85820 0.95250 0.97038 0.88232 1.20172 0.81123 0.90240 0.77969 1.43721 1.24271 1.15339 1.58628 1.90828 1.51997 1.39435 1.56464 1.89430 1.31280 1.45360 1.56984 1.21979 0.94483 0.82430 1.02590 1.22636 0.98382 0.98760 0.99908 0.93485 0.78473 0.95611 0.95229 0.76888 0.90383 0.89878 0.89306 0.90477 0.88509 0.89555 0.89810 0.88855 0.76995 0.76287 0.90283 0.90167 0.90686 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.34 9.99 -15.06 -0.15 -6.49 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -16.75 5.07 -59.91 -0.30 -17.05 16 10 C 0.13 2.40 5.43 -4.04 -0.02 2.38 16 11 C 0.13 1.94 0.71 -90.58 -0.06 1.88 16 12 O -0.56 -8.55 11.70 -35.23 -0.41 -8.96 16 13 C -0.12 -1.57 5.11 -26.62 -0.14 -1.70 16 14 C 0.12 1.58 6.19 -3.71 -0.02 1.56 16 15 N -0.60 -7.61 2.97 -172.50 -0.51 -8.13 16 16 C 0.52 7.43 7.01 -10.98 -0.08 7.35 16 17 O -0.52 -9.78 15.96 -13.66 -0.22 -10.00 16 18 C 0.06 0.60 2.75 -27.10 -0.07 0.53 16 19 H 0.10 0.88 7.51 -51.93 -0.39 0.49 16 20 C -0.14 -1.09 5.62 -25.16 -0.14 -1.23 16 21 C -0.14 -0.84 6.62 -25.17 -0.17 -1.01 16 22 C 0.05 0.44 3.70 -27.11 -0.10 0.34 16 23 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 24 C 0.52 5.16 7.35 -10.99 -0.08 5.08 16 25 N -0.85 -3.89 8.87 31.22 0.28 -3.62 16 26 O -0.51 -8.12 17.39 -13.64 -0.24 -8.35 16 27 O -0.31 -4.30 10.17 -64.21 -0.65 -4.95 16 28 C 0.11 1.16 5.56 -3.49 -0.02 1.15 16 29 C -0.16 -2.13 4.89 -26.39 -0.13 -2.26 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.38 8.78 5.55 -40.82 -0.23 8.55 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.38 5.76 8.19 45.56 0.37 6.13 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.24 7.00 -51.93 -0.36 0.87 16 38 H 0.08 1.01 7.82 -51.93 -0.41 0.61 16 39 H 0.10 0.50 6.93 -51.93 -0.36 0.14 16 40 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 41 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.40 0.42 8.83 -40.82 -0.36 0.06 16 44 H 0.41 1.54 8.93 -40.82 -0.36 1.18 16 45 H 0.08 0.83 7.81 -51.93 -0.41 0.43 16 46 H 0.08 0.67 4.52 -51.93 -0.23 0.43 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.40 6.53 -51.93 -0.34 1.06 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -37.62 380.99 -8.30 -45.92 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.40 Total: 11.36 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.28 Total: 7.13 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.19 Total: -54.45 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.52 Total: -32.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.62 -8.30 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484960404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.772 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds