Wall clock time and date at job start Sat Apr 11 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47288 * 240.00475 * 3 2 1 5 5 H 1.48508 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47359 * 120.00097 * 3 2 1 7 7 C 1.38945 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99365 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99768 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99915 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99526 * 180.27661 * 10 9 7 13 13 N 1.46904 * 109.46790 * 179.72489 * 12 10 9 14 14 C 1.46894 * 110.99921 * 178.59903 * 13 12 10 15 15 H 1.09001 * 109.47635 * 325.47691 * 14 13 12 16 16 C 1.53000 * 109.47242 * 205.47288 * 14 13 12 17 17 N 1.46496 * 109.46973 * 55.00192 * 16 14 13 18 18 C 1.34775 * 120.00319 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00370 * 180.02562 * 18 17 16 21 21 H 1.08999 * 109.52709 * 54.86308 * 20 18 17 22 22 C 1.53146 * 109.52079 * 294.66923 * 20 18 17 23 23 O 1.43078 * 109.14960 * 184.78222 * 22 20 18 24 24 C 1.43074 * 113.58880 * 57.95530 * 23 22 20 25 25 C 1.53140 * 109.15448 * 302.04482 * 24 23 22 26 26 O 1.43074 * 109.52443 * 174.99767 * 20 18 17 27 27 C 1.53006 * 109.47085 * 85.47452 * 14 13 12 28 28 C 1.52997 * 117.50166 * 253.24976 * 27 14 13 29 29 C 1.53001 * 117.49793 * 184.59302 * 27 14 13 30 30 H 0.97006 * 119.99875 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00126 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47298 * 299.72198 * 12 10 9 33 33 H 1.09003 * 109.47193 * 59.72338 * 12 10 9 34 34 H 1.00899 * 110.99970 * 54.64355 * 13 12 10 35 35 H 1.08998 * 109.47072 * 175.00145 * 16 14 13 36 36 H 1.08996 * 109.47380 * 295.00037 * 16 14 13 37 37 H 0.97002 * 120.00053 * 0.02562 * 17 16 14 38 38 H 1.08992 * 109.52679 * 304.68874 * 22 20 18 39 39 H 1.09002 * 109.52360 * 64.88835 * 22 20 18 40 40 H 1.09003 * 109.52432 * 182.14124 * 24 23 22 41 41 H 1.09001 * 109.58177 * 61.97773 * 24 23 22 42 42 H 1.09000 * 109.52625 * 295.41451 * 25 24 23 43 43 H 1.09001 * 109.53081 * 175.21786 * 25 24 23 44 44 H 1.08994 * 115.55082 * 38.92205 * 27 14 13 45 45 H 1.09006 * 117.50010 * 359.97438 * 28 27 14 46 46 H 1.08994 * 117.50516 * 145.01701 * 28 27 14 47 47 H 1.09007 * 117.49595 * 214.98428 * 29 27 14 48 48 H 1.08996 * 117.50089 * 359.97072 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2436 -4.8629 -0.0068 13 7 2.1982 -5.9795 -0.0122 14 6 1.4983 -7.2706 0.0151 15 1 0.5917 -7.1800 0.6135 16 6 2.4114 -8.3329 0.6305 17 7 2.8616 -7.8846 1.9504 18 6 3.6811 -8.6638 2.6836 19 8 4.0455 -9.7366 2.2507 20 6 4.1438 -8.2029 4.0417 21 1 3.2784 -7.9619 4.6590 22 6 5.0260 -6.9606 3.8873 23 8 5.5511 -6.5959 5.1673 24 6 6.3097 -7.6356 5.7923 25 6 5.4276 -8.8779 5.9467 26 8 4.9024 -9.2426 4.6667 27 6 1.1285 -7.6806 -1.4119 28 6 -0.3433 -7.5787 -1.8173 29 6 0.2945 -8.9512 -1.5882 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0002 32 1 0.6170 -4.9249 0.8828 33 1 0.6169 -4.9163 -0.8971 34 1 2.8475 -5.9038 0.7564 35 1 1.8624 -9.2690 0.7324 36 1 3.2758 -8.4872 -0.0152 37 1 2.5698 -7.0267 2.2969 38 1 5.8476 -7.1797 3.2054 39 1 4.4309 -6.1383 3.4900 40 1 6.6444 -7.3021 6.7746 41 1 7.1751 -7.8777 5.1754 42 1 4.6059 -8.6588 6.6286 43 1 6.0226 -9.7002 6.3441 44 1 1.8766 -7.4599 -2.1732 45 1 -1.0483 -7.2200 -1.0673 46 1 -0.5634 -7.2913 -2.8454 47 1 0.4939 -9.5662 -2.4658 48 1 0.0097 -9.4953 -0.6878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490643285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:30 Heat of formation + Delta-G solvation = -125.154469 kcal Electronic energy + Delta-G solvation = -30192.960183 eV Core-core repulsion = 25863.311814 eV Total energy + Delta-G solvation = -4329.648369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79332 -39.49194 -38.58818 -37.82325 -36.34831 -35.44752 -34.18710 -33.59696 -32.17540 -31.26444 -29.68986 -28.27483 -26.19984 -25.35614 -24.04625 -23.43339 -22.44744 -21.98467 -20.79181 -20.06801 -19.35075 -18.14607 -17.84353 -17.35858 -16.88535 -16.53131 -16.27324 -15.94823 -15.62473 -15.58783 -15.31674 -15.05106 -14.92994 -14.50342 -14.22689 -13.97476 -13.83352 -13.59650 -13.50416 -13.18958 -12.72866 -12.51000 -12.36589 -12.01283 -11.95134 -11.68094 -11.55098 -11.53760 -11.42655 -11.20354 -11.04713 -10.93337 -10.47060 -10.38571 -10.25270 -10.15334 -9.94691 -9.55293 -9.53941 -9.34195 -8.53141 -8.21328 -8.00677 -6.45555 -3.86553 2.29528 2.44500 3.17657 3.23891 3.28069 3.34270 3.53574 3.70478 3.84878 3.95532 4.13692 4.20540 4.34012 4.51861 4.61048 4.63361 4.70996 4.72633 4.83071 4.93714 4.98436 5.08627 5.13617 5.16310 5.22897 5.25055 5.36202 5.38271 5.42996 5.46796 5.56611 5.67763 5.81187 5.82968 5.94026 6.03499 6.11086 6.16017 6.26616 6.50617 6.58478 7.07060 7.13374 7.49189 7.51534 7.90903 8.01613 8.56383 9.13687 9.49485 10.00411 10.71933 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008051 B = 0.003060 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.185492 B = 9147.508698 C =12250.706286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.438 3.562 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.660 5.660 14 C 0.107 3.893 15 H 0.051 0.949 16 C 0.123 3.877 17 N -0.728 5.728 18 C 0.526 3.474 19 O -0.514 6.514 20 C 0.037 3.963 21 H 0.095 0.905 22 C 0.036 3.964 23 O -0.369 6.369 24 C 0.019 3.981 25 C 0.024 3.976 26 O -0.351 6.351 27 C -0.134 4.134 28 C -0.177 4.177 29 C -0.181 4.181 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.347 0.653 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -17.494 8.011 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.295 5.295 14 C -0.003 4.003 15 H 0.069 0.931 16 C -0.001 4.001 17 N -0.383 5.383 18 C 0.310 3.690 19 O -0.387 6.387 20 C -0.024 4.024 21 H 0.113 0.887 22 C -0.042 4.042 23 O -0.287 6.287 24 C -0.058 4.058 25 C -0.053 4.053 26 O -0.270 6.270 27 C -0.154 4.154 28 C -0.214 4.214 29 C -0.219 4.219 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.617 -18.112 7.024 19.602 hybrid contribution -0.785 1.324 1.072 1.875 sum 1.832 -16.789 8.096 18.729 Atomic orbital electron populations 1.69603 1.05947 1.28326 1.50365 1.25258 0.95625 0.99739 0.97199 0.85924 0.78787 0.80433 0.79128 1.19849 1.20970 1.19873 1.19655 0.93358 0.82216 1.47805 0.87938 1.41850 1.09192 1.04594 1.64122 1.19783 0.88388 0.84697 0.84769 1.90531 1.13681 1.87015 1.55558 1.21760 0.94268 0.90741 1.01427 1.59991 1.17885 0.99348 1.52266 1.21309 0.95291 0.89309 0.94413 0.93122 1.21559 0.99121 0.97093 0.82292 1.45962 1.50207 1.22706 1.19410 1.19845 0.78737 0.84799 0.85606 1.90741 1.55110 1.21634 1.71262 1.22591 0.96198 0.89834 0.93811 0.88739 1.23189 0.98095 0.96450 0.86424 1.88170 1.70237 1.37829 1.32511 1.23325 0.94207 0.88594 0.99670 1.23362 0.98006 0.98609 0.85345 1.88216 1.69934 1.36093 1.32712 1.22210 0.94681 1.01090 0.97370 1.23010 0.95589 1.00122 1.02722 1.22967 1.04792 0.90881 1.03247 0.91780 0.77468 0.93930 0.89165 0.83103 0.90478 0.89894 0.76475 0.91002 0.86628 0.87380 0.91712 0.91805 0.87153 0.86554 0.88923 0.88649 0.88691 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 10 C 0.44 9.80 7.82 -10.98 -0.09 9.71 16 11 O -0.58 -15.11 15.75 5.55 0.09 -15.02 16 12 C 0.05 0.82 5.98 -4.97 -0.03 0.79 16 13 N -0.66 -9.52 5.95 -107.99 -0.64 -10.17 16 14 C 0.11 1.18 2.39 -67.71 -0.16 1.02 16 15 H 0.05 0.52 7.57 -51.93 -0.39 0.13 16 16 C 0.12 1.33 5.14 -4.04 -0.02 1.31 16 17 N -0.73 -7.60 4.95 -60.30 -0.30 -7.90 16 18 C 0.53 6.56 7.18 -10.99 -0.08 6.48 16 19 O -0.51 -8.42 16.51 -14.26 -0.24 -8.66 16 20 C 0.04 0.40 3.25 -27.81 -0.09 0.31 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 C 0.04 0.38 6.29 37.23 0.23 0.61 16 23 O -0.37 -4.09 10.85 -48.80 -0.53 -4.62 16 24 C 0.02 0.16 7.05 37.23 0.26 0.42 16 25 C 0.02 0.19 7.05 37.23 0.26 0.45 16 26 O -0.35 -4.20 10.03 -62.50 -0.63 -4.82 16 27 C -0.13 -1.44 5.22 -90.62 -0.47 -1.92 16 28 C -0.18 -1.73 10.18 -26.70 -0.27 -2.01 16 29 C -0.18 -1.61 9.88 -26.70 -0.26 -1.88 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 32 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 33 H 0.09 1.39 8.05 -51.93 -0.42 0.98 16 34 H 0.35 5.08 6.36 -39.29 -0.25 4.83 16 35 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 3.59 7.32 -40.82 -0.30 3.29 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.76 7.96 -51.93 -0.41 0.34 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -34.05 399.86 -9.03 -43.08 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -7.49 Total: 15.93 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.96 Total: 7.50 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.27 Total: -55.08 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.30 Total: -33.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.05 -9.03 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490643285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.078 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds