Wall clock time and date at job start Sat Apr 11 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47287 * 269.99507 * 3 2 1 5 5 H 1.48499 * 109.46999 * 29.99721 * 3 2 1 6 6 H 1.48508 * 109.47301 * 149.99674 * 3 2 1 7 7 C 1.38954 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00028 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00055 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47357 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00387 * 177.72716 * 13 12 10 15 15 H 1.08997 * 109.47303 * 33.58531 * 14 13 12 16 16 C 1.53001 * 109.47690 * 153.59049 * 14 13 12 17 17 N 1.46500 * 109.46814 * 305.00150 * 16 14 13 18 18 C 1.34770 * 120.00136 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00175 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.00240 * 180.02562 * 18 17 16 21 21 H 1.09000 * 109.51958 * 304.99566 * 20 18 17 22 22 C 1.53135 * 109.52602 * 65.12722 * 20 18 17 23 23 O 1.43083 * 109.15155 * 175.21543 * 22 20 18 24 24 C 1.43069 * 113.59178 * 302.04956 * 23 22 20 25 25 C 1.53139 * 109.15597 * 57.94990 * 24 23 22 26 26 O 1.43081 * 109.52495 * 184.86662 * 20 18 17 27 27 C 1.53003 * 109.46988 * 273.59093 * 14 13 12 28 28 C 1.53002 * 117.49906 * 243.50999 * 27 14 13 29 29 C 1.52995 * 117.50254 * 174.84692 * 27 14 13 30 30 H 0.97000 * 119.99729 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99988 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47103 * 60.00003 * 12 10 9 33 33 H 1.09003 * 109.47165 * 299.99979 * 12 10 9 34 34 H 1.00898 * 111.00173 * 53.77043 * 13 12 10 35 35 H 1.09007 * 109.46690 * 64.99293 * 16 14 13 36 36 H 1.08990 * 109.47138 * 184.99650 * 16 14 13 37 37 H 0.97002 * 119.99958 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.52690 * 295.11864 * 22 20 18 39 39 H 1.09006 * 109.52952 * 55.31524 * 22 20 18 40 40 H 1.08999 * 109.52698 * 177.85490 * 24 23 22 41 41 H 1.09006 * 109.52207 * 298.04601 * 24 23 22 42 42 H 1.08997 * 109.52626 * 64.58512 * 25 24 23 43 43 H 1.08999 * 109.53105 * 184.72267 * 25 24 23 44 44 H 1.09003 * 115.54884 * 29.17462 * 27 14 13 45 45 H 1.09006 * 117.49748 * 359.97438 * 28 27 14 46 46 H 1.08994 * 117.50131 * 145.02384 * 28 27 14 47 47 H 1.08999 * 117.50118 * 214.98186 * 29 27 14 48 48 H 1.09000 * 117.49860 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.4987 -7.2702 0.0545 15 1 0.5567 -7.1958 -0.4886 16 6 2.3724 -8.3510 -0.5853 17 7 2.7393 -7.9417 -1.9433 18 6 3.5112 -8.7434 -2.7034 19 8 3.9025 -9.8035 -2.2631 20 6 3.8891 -8.3220 -4.1001 21 1 2.9871 -8.0988 -4.6698 22 6 4.7759 -7.0752 -4.0363 23 8 5.2212 -6.7478 -5.3561 24 6 5.9428 -7.8048 -5.9956 25 6 5.0560 -9.0517 -6.0594 26 8 4.6095 -9.3797 -4.7402 27 6 1.2188 -7.6381 1.5131 28 6 1.8906 -8.8967 2.0656 29 6 0.3872 -8.8947 1.7776 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6174 -4.9205 -0.8903 33 1 0.6167 -4.9209 0.8897 34 1 2.8558 -5.8927 0.7610 35 1 3.2756 -8.4874 0.0095 36 1 1.8188 -9.2890 -0.6256 37 1 2.4261 -7.0939 -2.2956 38 1 4.2042 -6.2420 -3.6275 39 1 5.6383 -7.2736 -3.3997 40 1 6.2161 -7.5002 -7.0058 41 1 6.8443 -8.0278 -5.4248 42 1 4.1937 -8.8534 -6.6959 43 1 5.6274 -9.8846 -6.4692 44 1 1.0895 -6.7965 2.1937 45 1 2.5317 -9.4630 1.3899 46 1 2.2028 -8.8835 3.1098 47 1 -0.2890 -8.8801 2.6324 48 1 0.0391 -9.4592 0.9126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490643286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:33 Heat of formation + Delta-G solvation = -126.723915 kcal Electronic energy + Delta-G solvation = -30201.692710 eV Core-core repulsion = 25871.976285 eV Total energy + Delta-G solvation = -4329.716425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64776 -39.49015 -38.58871 -37.94194 -36.23596 -35.06952 -34.22367 -33.65267 -32.06221 -31.27228 -29.44705 -28.15181 -26.21490 -25.20718 -24.22065 -23.45812 -22.55615 -21.99718 -20.58556 -20.00036 -19.33888 -17.99118 -17.70874 -17.35692 -16.84407 -16.54800 -16.18350 -15.87497 -15.59992 -15.44061 -15.09157 -15.04207 -14.64461 -14.53488 -14.29317 -14.02544 -13.79673 -13.59888 -13.44382 -13.13018 -12.66404 -12.40599 -12.29500 -11.92773 -11.87022 -11.72910 -11.59827 -11.56390 -11.43024 -11.10909 -11.08369 -10.83112 -10.58716 -10.42759 -10.26109 -10.18018 -9.85920 -9.55677 -9.44851 -9.08985 -8.55364 -8.20609 -8.01519 -6.46571 -3.87482 2.47215 2.64239 3.14813 3.24096 3.29531 3.44553 3.53966 3.72287 3.84275 4.04459 4.24433 4.27602 4.45390 4.60336 4.62376 4.68291 4.72827 4.81305 4.84230 4.87008 4.93318 5.04731 5.13628 5.19543 5.19875 5.33887 5.42265 5.45295 5.46918 5.55018 5.56605 5.72533 5.73068 5.79254 5.88692 5.95121 5.99900 6.19709 6.34852 6.62246 6.68506 7.05101 7.45716 7.50817 7.52290 8.00946 8.13465 8.55333 9.12974 9.48667 9.99439 10.70984 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.003002 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.317335 B = 9324.577490 C =12290.968693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.438 3.562 11 O -0.583 6.583 12 C 0.049 3.951 13 N -0.660 5.660 14 C 0.103 3.897 15 H 0.088 0.912 16 C 0.134 3.866 17 N -0.707 5.707 18 C 0.522 3.478 19 O -0.526 6.526 20 C 0.039 3.961 21 H 0.093 0.907 22 C 0.037 3.963 23 O -0.371 6.371 24 C 0.019 3.981 25 C 0.024 3.976 26 O -0.353 6.353 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.175 4.175 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.357 0.643 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.410 0.590 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -17.744 -6.181 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.084 4.084 13 N -0.292 5.292 14 C -0.008 4.008 15 H 0.106 0.894 16 C 0.010 3.990 17 N -0.361 5.361 18 C 0.306 3.694 19 O -0.402 6.402 20 C -0.023 4.023 21 H 0.111 0.889 22 C -0.040 4.040 23 O -0.289 6.289 24 C -0.058 4.058 25 C -0.053 4.053 26 O -0.271 6.271 27 C -0.203 4.203 28 C -0.219 4.219 29 C -0.213 4.213 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.431 -18.330 -6.541 19.613 hybrid contribution -0.783 1.319 0.793 1.727 sum 1.649 -17.010 -5.748 18.031 Atomic orbital electron populations 1.69607 1.05952 1.28226 1.50438 1.25261 0.95625 0.99754 0.97218 0.85865 0.79244 0.80783 0.78461 1.20333 1.20938 1.19400 1.19698 0.93370 0.82206 1.47688 0.87901 1.41863 1.09201 1.04627 1.64134 1.19781 0.88384 0.84699 0.84761 1.90537 1.13687 1.87015 1.55526 1.21739 0.94445 0.90850 1.01369 1.60233 1.16822 0.99141 1.53011 1.21383 0.96872 0.89927 0.92600 0.89379 1.21492 0.99260 0.96246 0.81995 1.45702 1.52087 1.23152 1.15146 1.19844 0.78841 0.84599 0.86147 1.90714 1.53273 1.22997 1.73183 1.22577 0.96765 0.89486 0.93468 0.88890 1.23197 0.98713 0.96899 0.85207 1.88164 1.73794 1.38130 1.28807 1.23308 0.94728 0.88254 0.99476 1.23338 0.98684 0.98737 0.84564 1.88210 1.73618 1.36465 1.28770 1.23142 1.06026 0.93045 0.98059 1.23163 0.95611 1.00848 1.02261 1.22954 0.94070 1.00842 1.03435 0.91832 0.77474 0.89566 0.93579 0.82272 0.90827 0.91245 0.75372 0.86265 0.91260 0.87501 0.91839 0.91892 0.87300 0.87260 0.87843 0.88828 0.88852 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 10 C 0.44 9.58 7.81 -10.98 -0.09 9.49 16 11 O -0.58 -14.86 15.73 5.55 0.09 -14.77 16 12 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 13 N -0.66 -8.95 5.36 -107.99 -0.58 -9.53 16 14 C 0.10 1.08 2.51 -67.71 -0.17 0.91 16 15 H 0.09 0.86 7.81 -51.93 -0.41 0.46 16 16 C 0.13 1.46 3.95 -4.04 -0.02 1.45 16 17 N -0.71 -8.02 5.35 -60.30 -0.32 -8.35 16 18 C 0.52 6.94 7.18 -10.99 -0.08 6.86 16 19 O -0.53 -8.98 16.51 -14.26 -0.24 -9.21 16 20 C 0.04 0.45 3.25 -27.81 -0.09 0.36 16 21 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.04 0.43 6.29 37.23 0.23 0.66 16 23 O -0.37 -4.39 10.85 -48.76 -0.53 -4.91 16 24 C 0.02 0.17 7.05 37.23 0.26 0.43 16 25 C 0.02 0.21 7.05 37.23 0.26 0.47 16 26 O -0.35 -4.46 10.03 -62.49 -0.63 -5.09 16 27 C -0.18 -1.79 5.56 -90.62 -0.50 -2.29 16 28 C -0.18 -1.66 9.50 -26.69 -0.25 -1.91 16 29 C -0.18 -1.49 10.01 -26.69 -0.27 -1.76 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 9.04 7.90 -40.82 -0.32 8.71 16 32 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.05 0.65 7.80 -51.93 -0.40 0.25 16 34 H 0.36 5.38 8.07 -39.29 -0.32 5.06 16 35 H 0.07 0.89 6.88 -51.93 -0.36 0.54 16 36 H 0.07 0.73 7.60 -51.93 -0.39 0.34 16 37 H 0.41 4.31 8.06 -40.82 -0.33 3.99 16 38 H 0.12 1.32 8.06 -51.93 -0.42 0.90 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 1.17 7.90 -51.93 -0.41 0.76 16 45 H 0.10 0.97 5.80 -51.93 -0.30 0.67 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -33.32 396.94 -8.95 -42.27 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -7.39 Total: 17.11 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.98 Total: 7.65 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.24 Total: -54.63 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.30 Total: -33.98 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.32 -8.95 -42.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490643286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.455 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds