Wall clock time and date at job start Sat Apr 11 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99871 * 2 1 4 4 H 1.48505 * 109.47038 * 240.00371 * 3 2 1 5 5 H 1.48499 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47194 * 120.00737 * 3 2 1 7 7 C 1.38947 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99915 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99888 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99905 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00060 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47437 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00438 * 181.29537 * 13 12 10 15 15 H 1.09000 * 109.46702 * 32.40891 * 14 13 12 16 16 C 1.52998 * 109.46989 * 152.40258 * 14 13 12 17 17 N 1.46497 * 109.47476 * 305.00147 * 16 14 13 18 18 C 1.34778 * 120.00139 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00223 * 180.02562 * 18 17 16 21 21 H 1.09003 * 109.52517 * 54.99884 * 20 18 17 22 22 C 1.53146 * 109.52446 * 294.87604 * 20 18 17 23 23 O 1.43088 * 109.14176 * 184.85548 * 22 20 18 24 24 C 1.43071 * 113.65273 * 57.84537 * 23 22 20 25 25 C 1.53139 * 109.15043 * 302.08489 * 24 23 22 26 26 O 1.43071 * 109.52627 * 175.13275 * 20 18 17 27 27 C 1.52991 * 109.47477 * 272.40720 * 14 13 12 28 28 C 1.52998 * 117.50057 * 176.76398 * 27 14 13 29 29 C 1.52993 * 60.03667 * 252.49763 * 28 27 14 30 30 H 0.96998 * 120.00156 * 359.97438 * 1 2 3 31 31 H 0.96990 * 119.99948 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47674 * 59.99631 * 12 10 9 33 33 H 1.09004 * 109.46683 * 299.99385 * 12 10 9 34 34 H 1.00899 * 110.99906 * 305.25330 * 13 12 10 35 35 H 1.09004 * 109.47048 * 65.00827 * 16 14 13 36 36 H 1.08999 * 109.47111 * 185.00483 * 16 14 13 37 37 H 0.96998 * 119.99842 * 0.02562 * 17 16 14 38 38 H 1.09003 * 109.51957 * 304.68404 * 22 20 18 39 39 H 1.08991 * 109.52387 * 64.87921 * 22 20 18 40 40 H 1.09001 * 109.52640 * 182.18137 * 24 23 22 41 41 H 1.09002 * 109.57872 * 62.01679 * 24 23 22 42 42 H 1.09003 * 109.52431 * 295.40533 * 25 24 23 43 43 H 1.09001 * 109.52571 * 175.21306 * 25 24 23 44 44 H 1.09005 * 115.55107 * 322.43846 * 27 14 13 45 45 H 1.09001 * 117.50008 * 0.02562 * 28 27 14 46 46 H 1.09005 * 117.49642 * 144.99764 * 28 27 14 47 47 H 1.08998 * 117.50029 * 107.49775 * 29 28 27 48 48 H 1.08997 * 117.49982 * 252.52580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4984 -7.2706 -0.0319 15 1 0.5726 -7.1682 -0.5980 16 6 2.3911 -8.3185 -0.6997 17 7 2.7972 -7.8417 -2.0241 18 6 3.5924 -8.6043 -2.8003 19 8 3.9714 -9.6856 -2.4026 20 6 4.0106 -8.1136 -4.1624 21 1 4.4839 -7.1362 -4.0680 22 6 2.7793 -8.0007 -5.0660 23 8 3.1979 -7.6440 -6.3870 24 6 4.1230 -8.5695 -6.9655 25 6 5.3540 -8.6808 -6.0613 26 8 4.9357 -9.0391 -4.7408 27 6 1.1762 -7.7112 1.3973 28 6 0.3764 -9.0033 1.5749 29 6 -0.2870 -7.6510 1.8431 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6175 -4.9205 -0.8912 33 1 0.6169 -4.9208 0.8887 34 1 2.8472 -5.9010 -0.7691 35 1 3.2766 -8.4855 -0.0863 36 1 1.8395 -9.2528 -0.8034 37 1 2.4944 -6.9767 -2.3420 38 1 2.2601 -8.9587 -5.0956 39 1 2.1099 -7.2344 -4.6754 40 1 4.4255 -8.2146 -7.9507 41 1 3.6507 -9.5474 -7.0597 42 1 5.8722 -7.7223 -6.0319 43 1 6.0244 -9.4466 -6.4514 44 1 1.9392 -7.4852 2.1423 45 1 0.0800 -9.5397 0.6735 46 1 0.6132 -9.6274 2.4367 47 1 -1.0200 -7.2974 1.1181 48 1 -0.4862 -7.3851 2.8812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490643287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:37 Heat of formation + Delta-G solvation = -125.084538 kcal Electronic energy + Delta-G solvation = -30082.438885 eV Core-core repulsion = 25752.793548 eV Total energy + Delta-G solvation = -4329.645337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82028 -39.51435 -38.59006 -37.82692 -36.39511 -35.45483 -34.18821 -33.60265 -32.21235 -31.26536 -29.69749 -28.31196 -26.22179 -25.39598 -24.05788 -23.43083 -22.45483 -22.01868 -20.79250 -20.09102 -19.34669 -18.14815 -17.85372 -17.39427 -16.91981 -16.51734 -16.40778 -15.85343 -15.75291 -15.59896 -15.32774 -15.12192 -14.77156 -14.57106 -14.29634 -13.99965 -13.80860 -13.60427 -13.51253 -13.23010 -12.77732 -12.49229 -12.39485 -12.03779 -11.98319 -11.67947 -11.55387 -11.53816 -11.43493 -11.22986 -11.05108 -10.99921 -10.47296 -10.39199 -10.25440 -10.15100 -9.95238 -9.59771 -9.54075 -9.34786 -8.52887 -8.20940 -8.00743 -6.45670 -3.86721 2.28275 2.44907 3.17396 3.23672 3.24722 3.27815 3.52131 3.70339 3.84978 3.95515 4.08195 4.20333 4.32588 4.49379 4.55177 4.62807 4.69453 4.71320 4.80822 4.93634 4.97831 5.01237 5.13611 5.14063 5.16424 5.22815 5.31470 5.34576 5.38343 5.46432 5.56513 5.67468 5.81026 5.82789 5.93625 6.03413 6.10770 6.16218 6.26989 6.48595 6.50023 7.07829 7.13046 7.50025 7.51398 7.90517 8.01573 8.56355 9.13583 9.49404 10.00447 10.71825 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008217 B = 0.002882 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.910260 B = 9714.799732 C =12367.099133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.438 3.562 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.661 5.661 14 C 0.108 3.892 15 H 0.052 0.948 16 C 0.122 3.878 17 N -0.728 5.728 18 C 0.526 3.474 19 O -0.513 6.513 20 C 0.035 3.965 21 H 0.100 0.900 22 C 0.038 3.962 23 O -0.371 6.371 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.350 6.350 27 C -0.134 4.134 28 C -0.181 4.181 29 C -0.177 4.177 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.348 0.652 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -18.138 -8.924 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.296 5.296 14 C -0.003 4.003 15 H 0.070 0.930 16 C -0.002 4.002 17 N -0.383 5.383 18 C 0.311 3.689 19 O -0.387 6.387 20 C -0.026 4.026 21 H 0.117 0.883 22 C -0.039 4.039 23 O -0.289 6.289 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.268 6.268 27 C -0.153 4.153 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.966 -18.766 -7.966 20.410 hybrid contribution -0.695 1.380 -1.001 1.841 sum 0.271 -17.386 -8.967 19.564 Atomic orbital electron populations 1.69601 1.05940 1.28332 1.50363 1.25260 0.95627 0.99734 0.97200 0.85922 0.78784 0.80435 0.79117 1.19884 1.20960 1.19857 1.19655 0.93353 0.82222 1.47818 0.87955 1.41850 1.09191 1.04589 1.64143 1.19785 0.88389 0.84704 0.84760 1.90535 1.13703 1.87018 1.55535 1.21758 0.94255 0.90754 1.01404 1.59985 1.17909 0.99320 1.52363 1.21308 0.95445 0.89324 0.94224 0.93008 1.21579 0.99723 0.96946 0.81927 1.45964 1.51750 1.22330 1.18258 1.19832 0.78603 0.84967 0.85540 1.90741 1.53422 1.21060 1.73506 1.22602 0.92880 0.94997 0.92162 0.88267 1.23141 0.94782 1.02802 0.83207 1.88150 1.62741 1.49197 1.28832 1.23330 0.90328 0.94388 0.97607 1.23370 0.96610 1.02620 0.82844 1.88220 1.61538 1.47546 1.29540 1.22232 0.95159 1.00670 0.97283 1.22957 1.04821 0.90859 1.03258 1.23010 0.95433 1.00483 1.02524 0.91776 0.77462 0.93915 0.89196 0.82985 0.89901 0.90459 0.76464 0.91376 0.87026 0.87309 0.91822 0.91563 0.87093 0.86543 0.88994 0.88705 0.88927 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.72 5.29 -10.97 -0.06 -13.78 16 10 C 0.44 9.85 7.82 -10.99 -0.09 9.77 16 11 O -0.58 -15.26 15.75 5.54 0.09 -15.17 16 12 C 0.05 0.82 5.98 -4.98 -0.03 0.79 16 13 N -0.66 -9.64 5.95 -108.00 -0.64 -10.29 16 14 C 0.11 1.19 2.41 -67.72 -0.16 1.02 16 15 H 0.05 0.53 7.52 -51.93 -0.39 0.14 16 16 C 0.12 1.31 5.11 -4.04 -0.02 1.29 16 17 N -0.73 -7.60 4.93 -60.30 -0.30 -7.90 16 18 C 0.53 6.56 7.18 -10.99 -0.08 6.48 16 19 O -0.51 -8.41 16.51 -14.26 -0.24 -8.65 16 20 C 0.04 0.38 3.25 -27.81 -0.09 0.29 16 21 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 22 C 0.04 0.35 6.30 37.23 0.23 0.58 16 23 O -0.37 -3.67 10.84 -48.80 -0.53 -4.20 16 24 C 0.02 0.15 7.05 37.23 0.26 0.41 16 25 C 0.02 0.18 7.05 37.23 0.26 0.44 16 26 O -0.35 -4.20 10.03 -62.51 -0.63 -4.83 16 27 C -0.13 -1.45 5.34 -90.58 -0.48 -1.93 16 28 C -0.18 -1.61 9.84 -26.74 -0.26 -1.87 16 29 C -0.18 -1.73 10.18 -26.69 -0.27 -2.00 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 31 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 32 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 33 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 34 H 0.35 5.22 6.37 -39.29 -0.25 4.97 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 37 H 0.40 3.61 7.34 -40.82 -0.30 3.31 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 48 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -34.26 399.77 -9.03 -43.29 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -7.49 Total: 15.64 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.97 Total: 7.47 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.27 Total: -55.25 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.30 Total: -32.85 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.26 -9.03 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490643287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.798 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds