Wall clock time and date at job start Sat Apr 11 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99558 * 2 1 4 4 H 1.48500 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47477 * 300.00510 * 3 2 1 6 6 H 1.48500 * 109.46842 * 60.00703 * 3 2 1 7 7 C 1.38953 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99782 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00048 * 0.27049 * 7 2 1 10 10 C 1.34774 * 119.99966 * 179.72368 * 9 7 2 11 11 O 1.21295 * 120.00317 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99872 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46910 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99943 * 174.82342 * 13 12 10 15 15 H 1.08996 * 109.47343 * 326.03773 * 14 13 12 16 16 C 1.52999 * 109.47688 * 206.03292 * 14 13 12 17 17 N 1.46505 * 109.46977 * 55.00069 * 16 14 13 18 18 C 1.34769 * 120.00506 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99465 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00293 * 180.02562 * 18 17 16 21 21 H 1.08999 * 109.52280 * 304.99853 * 20 18 17 22 22 C 1.53136 * 109.52423 * 65.13587 * 20 18 17 23 23 O 1.43074 * 109.15190 * 175.21597 * 22 20 18 24 24 C 1.43074 * 113.59438 * 302.04217 * 23 22 20 25 25 C 1.53151 * 109.14671 * 57.95115 * 24 23 22 26 26 O 1.43073 * 109.52450 * 184.87205 * 20 18 17 27 27 C 1.53006 * 109.46917 * 86.03452 * 14 13 12 28 28 C 1.53002 * 117.49907 * 252.39270 * 27 14 13 29 29 C 1.52996 * 117.49804 * 183.77091 * 27 14 13 30 30 H 0.96995 * 120.00167 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99828 * 359.73003 * 9 7 2 32 32 H 1.09000 * 109.47218 * 300.00166 * 12 10 9 33 33 H 1.08993 * 109.47168 * 60.00165 * 12 10 9 34 34 H 1.00897 * 111.00505 * 298.77762 * 13 12 10 35 35 H 1.08995 * 109.47511 * 175.00041 * 16 14 13 36 36 H 1.09003 * 109.47314 * 295.00794 * 16 14 13 37 37 H 0.97004 * 119.99493 * 0.02562 * 17 16 14 38 38 H 1.09009 * 109.52351 * 295.11360 * 22 20 18 39 39 H 1.08995 * 109.53036 * 55.31153 * 22 20 18 40 40 H 1.08998 * 109.53127 * 177.85305 * 24 23 22 41 41 H 1.09001 * 109.52534 * 298.05455 * 24 23 22 42 42 H 1.09003 * 109.52176 * 64.59542 * 25 24 23 43 43 H 1.09003 * 109.52271 * 184.72277 * 25 24 23 44 44 H 1.09001 * 115.54779 * 38.10597 * 27 14 13 45 45 H 1.09000 * 117.50006 * 0.02562 * 28 27 14 46 46 H 1.08998 * 117.49378 * 145.02071 * 28 27 14 47 47 H 1.09005 * 117.50158 * 214.98061 * 29 27 14 48 48 H 1.08999 * 117.50279 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8892 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0067 10 6 1.9975 -3.5577 -0.0128 11 8 3.2105 -3.5577 -0.0125 12 6 1.2441 -4.8629 -0.0202 13 7 2.1988 -5.9793 -0.0253 14 6 1.5027 -7.2677 0.0912 15 1 0.6212 -7.1488 0.7211 16 6 2.4420 -8.3001 0.7180 17 7 2.9449 -7.7902 1.9961 18 6 3.7942 -8.5347 2.7315 19 8 4.1424 -9.6267 2.3349 20 6 4.3110 -8.0104 4.0464 21 1 4.7768 -7.0370 3.8926 22 6 3.1492 -7.8717 5.0343 23 8 3.6629 -7.4810 6.3112 24 6 4.6262 -8.3944 6.8448 25 6 5.7881 -8.5331 5.8568 26 8 5.2754 -8.9231 4.5792 27 6 1.0758 -7.7442 -1.2987 28 6 -0.4141 -7.6801 -1.6407 29 6 0.2540 -9.0320 -1.3823 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0067 32 1 0.6171 -4.9255 0.8693 33 1 0.6177 -4.9158 -0.9106 34 1 2.7790 -5.9552 -0.8504 35 1 1.8993 -9.2302 0.8862 36 1 3.2798 -8.4846 0.0456 37 1 2.6661 -6.9169 2.3134 38 1 2.4533 -7.1139 4.6742 39 1 2.6331 -8.8273 5.1263 40 1 5.0001 -8.0152 7.7959 41 1 4.1598 -9.3676 6.9976 42 1 6.3043 -7.5775 5.7649 43 1 6.4846 -9.2901 6.2175 44 1 1.7859 -7.5473 -2.1018 45 1 -1.0901 -7.2980 -0.8758 46 1 -0.6844 -7.4407 -2.6692 47 1 0.4231 -9.6821 -2.2408 48 1 0.0171 -9.5396 -0.4473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490643288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:40 Heat of formation + Delta-G solvation = -129.769351 kcal Electronic energy + Delta-G solvation = -30071.247975 eV Core-core repulsion = 25741.399489 eV Total energy + Delta-G solvation = -4329.848485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64144 -39.37205 -38.58304 -37.85085 -36.27681 -35.17310 -34.17252 -33.60189 -32.10164 -31.25333 -29.60230 -28.21172 -26.20937 -25.25156 -24.07934 -23.11040 -22.52819 -21.92656 -20.82259 -20.28751 -19.27984 -17.97721 -17.76297 -17.27217 -16.77500 -16.47679 -16.32111 -15.77602 -15.71019 -15.57691 -15.20240 -14.84735 -14.71270 -14.52140 -14.15347 -14.08872 -13.73826 -13.55158 -13.36381 -13.16493 -12.66405 -12.48390 -12.35844 -12.01369 -11.88967 -11.75829 -11.56401 -11.53213 -11.40330 -11.11933 -11.08749 -10.89160 -10.67720 -10.37036 -10.27751 -10.22006 -9.82766 -9.55191 -9.47319 -9.05709 -8.57369 -8.14072 -7.99729 -6.45308 -3.86069 2.48668 2.67277 3.13860 3.24937 3.31871 3.36342 3.54805 3.75264 3.86859 3.98065 4.21898 4.23442 4.43776 4.61494 4.64440 4.67014 4.68883 4.80185 4.81331 4.92616 5.00624 5.08065 5.12813 5.16023 5.22844 5.25627 5.32139 5.41635 5.44860 5.45654 5.61438 5.71216 5.74641 5.79009 5.90763 5.93167 5.98617 6.21949 6.37276 6.59406 6.63801 7.06316 7.48177 7.51264 7.52180 8.02839 8.16440 8.57455 9.14814 9.50746 10.01985 10.72400 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.002918 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.815190 B = 9594.123172 C =12313.269889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.104 3.896 15 H 0.085 0.915 16 C 0.139 3.861 17 N -0.708 5.708 18 C 0.522 3.478 19 O -0.526 6.526 20 C 0.036 3.964 21 H 0.099 0.901 22 C 0.039 3.961 23 O -0.372 6.372 24 C 0.021 3.979 25 C 0.022 3.978 26 O -0.352 6.352 27 C -0.183 4.183 28 C -0.174 4.174 29 C -0.174 4.174 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.354 0.646 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -17.839 7.009 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.289 5.289 14 C -0.007 4.007 15 H 0.103 0.897 16 C 0.015 3.985 17 N -0.361 5.361 18 C 0.306 3.694 19 O -0.402 6.402 20 C -0.025 4.025 21 H 0.117 0.883 22 C -0.039 4.039 23 O -0.290 6.290 24 C -0.056 4.056 25 C -0.055 4.055 26 O -0.270 6.270 27 C -0.203 4.203 28 C -0.211 4.211 29 C -0.212 4.212 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.174 0.826 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.214 -18.397 7.397 19.866 hybrid contribution -0.744 1.304 -0.840 1.720 sum 0.470 -17.093 6.557 18.314 Atomic orbital electron populations 1.69611 1.05939 1.28078 1.50660 1.25254 0.95620 0.99720 0.97310 0.85817 0.79744 0.81176 0.77724 1.19208 1.20786 1.20717 1.19743 0.93380 0.82217 1.47494 0.87888 1.41870 1.09175 1.04630 1.64367 1.19807 0.88401 0.84662 0.84603 1.90539 1.13703 1.87053 1.55275 1.21718 0.94224 0.90926 1.01368 1.60193 1.21469 0.99544 1.47734 1.21466 0.96084 0.89703 0.93444 0.89703 1.21264 0.97498 0.95551 0.84187 1.45701 1.47133 1.21775 1.21488 1.19820 0.79198 0.85260 0.85093 1.90716 1.57206 1.20735 1.71539 1.22593 0.92121 0.94968 0.92836 0.88335 1.23146 0.94673 1.02463 0.83598 1.88150 1.58791 1.48471 1.33579 1.23317 0.90141 0.94604 0.97561 1.23348 0.96106 1.02247 0.83752 1.88212 1.57637 1.47159 1.33955 1.23124 0.95074 1.02869 0.99252 1.23004 0.94565 1.00700 1.02825 1.22903 1.04260 0.90681 1.03344 0.91916 0.77519 0.89766 0.93409 0.82627 0.91154 0.91234 0.75337 0.86881 0.91517 0.87430 0.91914 0.91669 0.87251 0.87365 0.88601 0.88734 0.88785 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -13.64 5.29 -10.96 -0.06 -13.70 16 10 C 0.44 9.70 7.83 -10.98 -0.09 9.61 16 11 O -0.58 -14.99 15.89 5.54 0.09 -14.91 16 12 C 0.05 0.78 6.00 -4.97 -0.03 0.75 16 13 N -0.66 -8.99 5.23 -107.99 -0.56 -9.56 16 14 C 0.10 1.08 2.34 -67.71 -0.16 0.92 16 15 H 0.08 0.82 7.49 -51.93 -0.39 0.43 16 16 C 0.14 1.54 5.19 -4.04 -0.02 1.52 16 17 N -0.71 -8.23 5.35 -60.29 -0.32 -8.55 16 18 C 0.52 7.10 7.18 -10.99 -0.08 7.02 16 19 O -0.53 -9.13 16.51 -14.26 -0.24 -9.36 16 20 C 0.04 0.43 3.25 -27.81 -0.09 0.34 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.04 0.39 6.29 37.23 0.23 0.62 16 23 O -0.37 -4.01 10.85 -48.76 -0.53 -4.54 16 24 C 0.02 0.17 7.05 37.24 0.26 0.43 16 25 C 0.02 0.20 7.05 37.24 0.26 0.46 16 26 O -0.35 -4.56 10.03 -62.49 -0.63 -5.18 16 27 C -0.18 -1.73 5.12 -90.62 -0.46 -2.19 16 28 C -0.17 -1.53 10.18 -26.73 -0.27 -1.80 16 29 C -0.17 -1.42 9.86 -26.73 -0.26 -1.69 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 32 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 33 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.35 5.23 8.24 -39.29 -0.32 4.90 16 35 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 4.51 8.06 -40.82 -0.33 4.18 16 38 H 0.11 0.95 8.06 -51.92 -0.42 0.54 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.11 1.08 7.96 -51.93 -0.41 0.66 16 45 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.10 0.73 7.90 -51.93 -0.41 0.32 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -33.87 401.80 -9.01 -42.89 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -7.58 Total: 16.21 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.95 Total: 8.24 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.22 Total: -55.05 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.30 Total: -33.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.87 -9.01 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490643288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.881 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds