Wall clock time and date at job start Sat Apr 11 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 C 1.53006 * 109.46891 * 120.00066 * 2 1 3 5 5 H 1.08994 * 109.46884 * 294.55333 * 4 2 1 6 6 C 1.53001 * 109.46769 * 174.55176 * 4 2 1 7 7 N 1.46497 * 109.46949 * 184.99724 * 6 4 2 8 8 C 1.34779 * 120.00241 * 179.97438 * 7 6 4 9 9 O 1.21574 * 119.99979 * 0.02562 * 8 7 6 10 10 C 1.47616 * 119.99956 * 180.02562 * 8 7 6 11 11 N 1.31874 * 126.46340 * 0.02586 * 10 8 7 12 12 N 1.28466 * 110.15361 * 179.73532 * 11 10 8 13 13 H 0.97001 * 124.92749 * 180.24015 * 12 11 10 14 14 C 1.35726 * 110.13559 * 0.39949 * 12 11 10 15 15 C 1.35541 * 107.11637 * 359.61036 * 14 12 11 16 16 F 1.35098 * 127.24275 * 180.25619 * 15 14 12 17 17 N 1.46897 * 109.47093 * 54.55383 * 4 2 1 18 18 C 1.46904 * 110.99942 * 63.84418 * 17 4 2 19 19 C 1.50705 * 109.46802 * 182.88675 * 18 17 4 20 20 O 1.21286 * 120.00123 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99697 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99866 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00203 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99887 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00143 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99613 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47042 * 60.00728 * 26 24 22 28 28 H 1.48502 * 109.46798 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47336 * 300.00205 * 26 24 22 30 30 H 1.08996 * 109.47339 * 294.74457 * 1 2 3 31 31 H 1.08999 * 109.47036 * 54.74668 * 1 2 3 32 32 H 1.09000 * 109.47102 * 174.74011 * 1 2 3 33 33 H 1.09003 * 109.47352 * 240.00258 * 2 1 3 34 34 H 1.09009 * 109.47170 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47558 * 299.99994 * 3 2 1 36 36 H 1.08999 * 109.47300 * 60.00053 * 3 2 1 37 37 H 1.09003 * 109.47148 * 65.00173 * 6 4 2 38 38 H 1.08995 * 109.47528 * 305.00137 * 6 4 2 39 39 H 0.97007 * 120.00181 * 0.02562 * 7 6 4 40 40 H 1.08001 * 126.44120 * 179.86554 * 14 12 11 41 41 H 1.00897 * 110.99860 * 187.79630 * 17 4 2 42 42 H 1.08996 * 109.47258 * 302.88337 * 18 17 4 43 43 H 1.09002 * 109.47364 * 62.88774 * 18 17 4 44 44 H 0.97004 * 120.00401 * 0.02562 * 21 19 18 45 45 H 0.97001 * 119.99776 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7584 -0.1542 2.1365 6 6 3.5638 -0.8410 1.1827 7 7 4.0414 -1.6347 2.3176 8 6 5.3595 -1.8736 2.4658 9 8 6.1523 -1.4299 1.6580 10 6 5.8406 -2.6739 3.6091 11 7 5.0978 -3.2141 4.5554 12 7 5.8386 -3.8480 5.3919 13 1 5.5131 -4.3278 6.1695 14 6 7.1432 -3.7458 5.0315 15 6 7.1867 -3.0066 3.8962 16 9 8.2835 -2.6607 3.1874 17 7 1.4459 -2.0631 1.3168 18 6 1.8784 -2.8880 0.1808 19 6 1.1950 -4.2297 0.2454 20 8 0.4241 -4.4747 1.1491 21 7 1.4407 -5.1573 -0.7010 22 6 0.8194 -6.3780 -0.6419 23 1 0.1329 -6.5962 0.1627 24 6 1.0723 -7.3341 -1.6180 25 7 1.9072 -7.0685 -2.5974 26 14 0.2263 -8.9977 -1.5371 27 1 -1.2454 -8.8078 -1.5936 28 1 0.6628 -9.8313 -2.6859 29 1 0.5895 -9.6765 -0.2673 30 1 -0.3634 0.4301 0.9333 31 1 -0.3633 0.5932 -0.8392 32 1 -0.3633 -1.0233 -0.0942 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 4.0085 0.1534 1.2221 38 1 3.8496 -1.3300 0.2514 39 1 3.4088 -1.9891 2.9620 40 1 7.9874 -4.1764 5.5494 41 1 1.6649 -2.5118 2.1936 42 1 1.6133 -2.3899 -0.7517 43 1 2.9585 -3.0280 0.2237 44 1 2.0575 -4.9615 -1.4236 45 1 2.0839 -7.7361 -3.2785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496596748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:59 Heat of formation + Delta-G solvation = -42.071777 kcal Electronic energy + Delta-G solvation = -30063.532130 eV Core-core repulsion = 25646.318943 eV Total energy + Delta-G solvation = -4417.213187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.84334 -42.99035 -39.89594 -38.57274 -37.47858 -34.42490 -33.97925 -32.92889 -32.15622 -31.17826 -30.90147 -28.74826 -27.19064 -26.23969 -24.68297 -24.02551 -22.52451 -21.93278 -20.58472 -19.89300 -19.25673 -18.75179 -17.82833 -17.48786 -16.75094 -16.58800 -16.22272 -16.06169 -15.47483 -15.24711 -15.13583 -14.73088 -14.61673 -14.44732 -14.38977 -14.00201 -13.73690 -13.46878 -13.31846 -12.92257 -12.76210 -12.38637 -12.19309 -11.98550 -11.66224 -11.55566 -11.44435 -11.37944 -11.03477 -10.87959 -10.78062 -10.43384 -10.41047 -10.25865 -10.18811 -9.95261 -9.47263 -9.31478 -9.14725 -8.46335 -8.05170 -7.93059 -6.38711 -3.79622 1.13380 1.49637 2.28527 2.89287 3.14513 3.21049 3.26720 3.30844 3.83684 3.94488 4.11453 4.23035 4.33843 4.46877 4.63136 4.72141 4.84229 4.99361 5.04606 5.21322 5.22909 5.28116 5.35125 5.55340 5.68270 5.72863 5.81100 5.89284 5.94857 5.98605 6.02539 6.05920 6.14300 6.27714 6.30120 6.40864 6.41478 6.63984 7.13694 7.17054 7.40512 7.57177 7.59036 8.03669 8.08649 8.64310 9.20527 9.57696 10.09205 10.78952 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007418 B = 0.003620 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3773.829041 B = 7733.297352 C =10345.498895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.082 3.918 5 H 0.090 0.910 6 C 0.079 3.921 7 N -0.712 5.712 8 C 0.604 3.396 9 O -0.522 6.522 10 C -0.031 4.031 11 N -0.227 5.227 12 N -0.366 5.366 13 H 0.458 0.542 14 C -0.038 4.038 15 C 0.038 3.962 16 F -0.099 7.099 17 N -0.652 5.652 18 C 0.043 3.957 19 C 0.442 3.558 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.275 1.275 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.406 0.594 40 H 0.199 0.801 41 H 0.345 0.655 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 12.354 13.636 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.029 4.029 5 H 0.108 0.892 6 C -0.047 4.047 7 N -0.365 5.365 8 C 0.387 3.613 9 O -0.396 6.396 10 C -0.193 4.193 11 N -0.064 5.064 12 N -0.083 5.083 13 H 0.304 0.696 14 C -0.183 4.183 15 C 0.008 3.992 16 F -0.078 7.078 17 N -0.283 5.283 18 C -0.089 4.089 19 C 0.228 3.772 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.242 0.758 40 H 0.216 0.784 41 H 0.165 0.835 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.053 12.498 13.459 19.674 hybrid contribution 1.641 -1.378 0.123 2.146 sum 8.694 11.119 13.582 19.588 Atomic orbital electron populations 1.21659 0.93758 1.03101 1.00662 1.21093 0.97296 0.95229 0.96915 1.21914 1.00964 0.95969 1.01928 1.21995 0.89029 0.91905 0.99994 0.89201 1.22334 0.96869 0.96186 0.89272 1.45760 1.07059 1.54579 1.29122 1.16663 0.82565 0.79164 0.82909 1.90851 1.54953 1.51044 1.42718 1.22162 0.90982 1.06968 0.99150 1.73663 1.22882 1.08891 1.00973 1.43035 1.03948 1.38787 1.22494 0.69563 1.22695 0.89596 1.06433 0.99532 1.17168 0.83596 1.04301 0.94106 1.91546 1.49184 1.90494 1.76574 1.60241 1.61040 1.01619 1.05430 1.21779 0.97515 0.94009 0.95614 1.19794 0.86603 0.85755 0.85079 1.90513 1.39429 1.80320 1.36487 1.41857 1.40899 1.13045 1.24237 1.19634 1.23274 0.89512 1.10499 0.88039 1.25251 0.97159 1.00030 0.95455 1.69607 1.35143 1.36107 1.13375 0.85936 0.79508 0.81235 0.77627 1.19884 1.20988 1.20014 0.93035 0.93623 0.90907 0.90855 0.92592 0.92428 0.92634 0.90572 0.90557 0.75841 0.78365 0.83456 0.89278 0.93582 0.77511 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.88 37.16 0.33 -1.27 16 2 C -0.09 -0.95 2.07 -90.62 -0.19 -1.14 16 3 C -0.15 -1.36 8.96 37.15 0.33 -1.02 16 4 C 0.08 0.94 2.29 -67.71 -0.16 0.79 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.08 0.95 4.15 -4.04 -0.02 0.93 16 7 N -0.71 -9.07 5.36 -61.33 -0.33 -9.39 16 8 C 0.60 9.04 7.82 -12.43 -0.10 8.94 16 9 O -0.52 -9.41 16.67 5.30 0.09 -9.32 16 10 C -0.03 -0.41 7.13 -82.74 -0.59 -1.00 16 11 N -0.23 -2.49 11.91 33.43 0.40 -2.09 16 12 N -0.37 -2.59 6.86 30.63 0.21 -2.38 16 13 H 0.46 1.31 8.96 -190.44 -1.71 -0.40 16 14 C -0.04 -0.28 12.06 -16.79 -0.20 -0.48 16 15 C 0.04 0.46 8.03 -39.26 -0.32 0.14 16 16 F -0.10 -1.38 17.03 2.25 0.04 -1.34 16 17 N -0.65 -9.73 5.03 -107.99 -0.54 -10.27 16 18 C 0.04 0.76 5.33 -4.97 -0.03 0.73 16 19 C 0.44 10.39 7.83 -10.98 -0.09 10.31 16 20 O -0.58 -15.58 15.84 5.55 0.09 -15.49 16 21 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 26 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.07 7.65 -51.93 -0.40 0.68 16 33 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 34 H 0.06 0.49 6.69 -51.92 -0.35 0.15 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.87 6.83 -51.93 -0.35 0.52 16 38 H 0.08 1.05 6.71 -51.93 -0.35 0.70 16 39 H 0.41 4.76 6.92 -40.82 -0.28 4.47 16 40 H 0.20 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.35 5.29 7.21 -39.29 -0.28 5.01 16 42 H 0.09 1.46 6.38 -51.93 -0.33 1.13 16 43 H 0.05 0.79 6.52 -51.93 -0.34 0.45 16 44 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -35.56 380.37 -7.04 -42.59 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -7.11 Total: 15.49 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.25 Total: 8.90 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.40 Total: -62.77 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.18 Total: -24.81 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.56 -7.04 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496596748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.523 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds