Wall clock time and date at job start Sat Apr 11 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 C 1.52997 * 109.46979 * 120.00118 * 2 1 3 5 5 H 1.09001 * 109.47108 * 185.00035 * 4 2 1 6 6 C 1.52997 * 109.47345 * 304.99634 * 4 2 1 7 7 N 1.46504 * 109.47417 * 174.99891 * 6 4 2 8 8 C 1.34777 * 119.99841 * 180.02562 * 7 6 4 9 9 O 1.21578 * 120.00454 * 359.97438 * 8 7 6 10 10 C 1.47622 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31874 * 126.45428 * 0.02562 * 10 8 7 12 12 N 1.28474 * 110.15004 * 179.72245 * 11 10 8 13 13 H 0.96998 * 124.92990 * 180.25014 * 12 11 10 14 14 C 1.35727 * 110.13375 * 0.42391 * 12 11 10 15 15 C 1.35542 * 107.11540 * 359.58587 * 14 12 11 16 16 F 1.35103 * 127.24387 * 180.28162 * 15 14 12 17 17 N 1.46902 * 109.47453 * 65.00216 * 4 2 1 18 18 C 1.46901 * 111.00156 * 84.99786 * 17 4 2 19 19 C 1.50701 * 109.47152 * 180.02562 * 18 17 4 20 20 O 1.21298 * 119.99724 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99496 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00557 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99644 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00110 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99836 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47374 * 59.99919 * 26 24 22 28 28 H 1.48497 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47001 * 299.99827 * 26 24 22 30 30 H 1.08999 * 109.47124 * 299.99954 * 1 2 3 31 31 H 1.08993 * 109.47246 * 59.99965 * 1 2 3 32 32 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47124 * 240.00046 * 2 1 3 34 34 H 1.09003 * 109.47020 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47148 * 300.00095 * 3 2 1 36 36 H 1.08999 * 109.47143 * 60.00057 * 3 2 1 37 37 H 1.09007 * 109.46788 * 55.00228 * 6 4 2 38 38 H 1.09001 * 109.47685 * 295.00381 * 6 4 2 39 39 H 0.96994 * 119.99909 * 0.02562 * 7 6 4 40 40 H 1.08002 * 126.44421 * 179.85380 * 14 12 11 41 41 H 1.00900 * 110.99836 * 321.04114 * 17 4 2 42 42 H 1.09003 * 109.46941 * 300.00398 * 18 17 4 43 43 H 1.09002 * 109.46970 * 60.00267 * 18 17 4 44 44 H 0.96994 * 120.00397 * 359.97438 * 21 19 18 45 45 H 0.97005 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.4300 -0.0763 2.4953 7 7 1.8227 -0.8397 3.6824 8 6 1.3987 -0.4542 4.9023 9 8 0.6907 0.5274 5.0176 10 6 1.7949 -1.2232 6.0985 11 7 2.5552 -2.3004 6.1212 12 7 2.7038 -2.7119 7.3291 13 1 3.2255 -3.4862 7.5919 14 6 2.0217 -1.9079 8.1838 15 6 1.4305 -0.9430 7.4377 16 9 0.6571 0.0730 7.8791 17 7 1.6514 -2.1367 1.1904 18 6 2.6261 -2.9186 0.4180 19 6 2.1947 -4.3620 0.3792 20 8 1.1756 -4.7056 0.9402 21 7 2.9410 -5.2709 -0.2790 22 6 2.5487 -6.5841 -0.3138 23 1 1.6419 -6.8903 0.1864 24 6 3.3185 -7.5214 -0.9919 25 7 4.4222 -7.1490 -1.6001 26 14 2.7836 -9.3106 -1.0400 27 1 1.4483 -9.4110 -1.6819 28 1 3.7686 -10.1008 -1.8213 29 1 2.7085 -9.8421 0.3446 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.3435 -0.0736 2.4081 38 1 1.7896 0.9486 2.5871 39 1 2.3879 -1.6227 3.5904 40 1 1.9646 -2.0141 9.2571 41 1 0.7222 -2.2411 0.8113 42 1 2.6810 -2.5286 -0.5984 43 1 3.6063 -2.8446 0.8890 44 1 3.7557 -4.9961 -0.7279 45 1 4.9598 -7.8034 -2.0732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496596749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:03 Heat of formation + Delta-G solvation = -45.440903 kcal Electronic energy + Delta-G solvation = -29600.149186 eV Core-core repulsion = 25182.789902 eV Total energy + Delta-G solvation = -4417.359284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.78468 -42.88634 -39.64538 -38.57774 -37.61639 -34.18650 -34.03964 -33.05486 -32.09172 -31.21896 -30.81046 -28.61964 -27.41038 -26.25540 -24.60604 -23.66897 -22.90481 -22.02094 -20.34247 -19.57646 -19.31838 -18.95337 -17.92513 -17.19306 -16.67288 -16.60127 -16.08819 -15.80940 -15.41894 -15.28100 -15.15300 -14.71612 -14.65488 -14.42554 -14.33846 -13.90570 -13.81872 -13.55597 -13.30930 -13.09419 -12.71522 -12.35391 -12.24977 -12.00255 -11.84665 -11.56700 -11.51437 -11.25948 -11.18175 -11.00525 -10.86731 -10.56148 -10.46055 -10.22871 -10.15618 -9.84988 -9.51449 -9.22425 -8.88796 -8.48499 -8.07528 -7.97289 -6.43391 -3.84114 1.26300 1.58023 2.38874 3.09984 3.18279 3.24095 3.28429 3.29871 3.89627 3.96989 4.07057 4.28967 4.33332 4.55272 4.66721 4.71435 4.89088 4.93101 5.11073 5.13765 5.17555 5.24032 5.28756 5.47280 5.56677 5.67377 5.77377 5.78705 5.83178 5.91911 5.95762 5.99609 6.08566 6.16400 6.24400 6.27164 6.48177 6.54187 7.16028 7.30411 7.53340 7.62468 7.68967 8.04577 8.25094 8.59834 9.16407 9.52946 10.04580 10.74269 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.002918 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.107746 B = 9592.285484 C =12097.789015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.147 4.147 4 C 0.076 3.924 5 H 0.085 0.915 6 C 0.129 3.871 7 N -0.694 5.694 8 C 0.599 3.401 9 O -0.536 6.536 10 C -0.028 4.028 11 N -0.222 5.222 12 N -0.368 5.368 13 H 0.457 0.543 14 C -0.040 4.040 15 C 0.035 3.965 16 F -0.101 7.101 17 N -0.662 5.662 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.416 0.584 40 H 0.198 0.802 41 H 0.354 0.646 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 14.132 12.481 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.205 4.205 4 C -0.035 4.035 5 H 0.103 0.897 6 C 0.005 3.995 7 N -0.345 5.345 8 C 0.382 3.618 9 O -0.411 6.411 10 C -0.190 4.190 11 N -0.059 5.059 12 N -0.084 5.084 13 H 0.304 0.696 14 C -0.185 4.185 15 C 0.005 3.995 16 F -0.080 7.080 17 N -0.296 5.296 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.253 0.747 40 H 0.215 0.785 41 H 0.176 0.824 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.246 13.661 12.710 18.661 hybrid contribution 0.130 -0.693 -0.537 0.886 sum 0.377 12.968 12.174 17.791 Atomic orbital electron populations 1.21969 0.94819 1.02338 1.02194 1.21756 0.96757 0.97108 0.98810 1.21860 1.00981 0.95605 1.02056 1.21911 1.00146 0.88437 0.92988 0.89665 1.21539 1.00651 0.94290 0.82975 1.45630 1.52134 1.31865 1.04870 1.16695 0.80177 0.83300 0.81636 1.90821 1.37745 1.26620 1.85934 1.22223 1.04576 0.97575 0.94634 1.73758 1.16966 1.11454 1.03734 1.43079 1.37752 1.24538 1.03079 0.69610 1.22670 1.02155 0.95115 0.98582 1.17180 1.00231 0.91021 0.91082 1.91532 1.71894 1.55728 1.88840 1.60230 1.06378 1.05826 1.57151 1.21722 0.96630 0.93590 0.96389 1.19806 0.86551 0.86684 0.84353 1.90537 1.26617 1.80682 1.48768 1.41848 1.23631 1.07719 1.46828 1.19647 1.08914 0.82895 1.31454 0.88014 1.25247 0.95589 1.00481 0.96562 1.69600 1.14353 1.35756 1.34648 0.85933 0.78247 0.81687 0.78443 1.19923 1.20989 1.19911 0.91824 0.92476 0.92151 0.90586 0.92580 0.92650 0.92194 0.90739 0.90958 0.74670 0.78537 0.82438 0.93739 0.89605 0.77496 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.52 37.16 0.32 -1.28 16 2 C -0.12 -1.25 2.79 -90.62 -0.25 -1.50 16 3 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 4 C 0.08 0.87 1.96 -67.71 -0.13 0.74 16 5 H 0.09 0.92 7.80 -51.93 -0.40 0.51 16 6 C 0.13 1.57 4.67 -4.04 -0.02 1.55 16 7 N -0.69 -9.46 5.39 -61.32 -0.33 -9.79 16 8 C 0.60 9.17 7.82 -12.43 -0.10 9.07 16 9 O -0.54 -9.57 16.67 5.30 0.09 -9.48 16 10 C -0.03 -0.38 7.13 -82.74 -0.59 -0.97 16 11 N -0.22 -2.65 11.91 33.43 0.40 -2.25 16 12 N -0.37 -2.86 6.86 30.63 0.21 -2.65 16 13 H 0.46 1.71 8.96 -190.44 -1.71 0.00 16 14 C -0.04 -0.31 12.06 -16.79 -0.20 -0.51 16 15 C 0.03 0.42 8.03 -39.27 -0.32 0.11 16 16 F -0.10 -1.38 17.03 2.25 0.04 -1.34 16 17 N -0.66 -9.85 5.32 -107.99 -0.57 -10.43 16 18 C 0.05 0.81 5.96 -4.97 -0.03 0.78 16 19 C 0.44 10.04 7.82 -10.99 -0.09 9.95 16 20 O -0.58 -15.41 15.78 5.54 0.09 -15.32 16 21 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 26 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.06 0.64 6.23 -51.93 -0.32 0.32 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 33 H 0.08 0.82 7.35 -51.93 -0.38 0.44 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 6.68 -51.93 -0.35 0.16 16 37 H 0.07 0.97 6.06 -51.92 -0.31 0.66 16 38 H 0.07 0.82 6.81 -51.93 -0.35 0.46 16 39 H 0.42 5.75 7.86 -40.82 -0.32 5.43 16 40 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.35 5.67 6.26 -39.29 -0.25 5.42 16 42 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 43 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 44 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -34.83 380.78 -7.07 -41.90 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.06 Total: 16.16 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.32 Total: 9.13 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.37 Total: -62.59 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.18 Total: -24.81 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.83 -7.07 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496596749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.537 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds