Wall clock time and date at job start Sat Apr 11 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 C 1.52997 * 109.46979 * 120.00118 * 2 1 3 5 5 H 1.09001 * 109.47108 * 185.00035 * 4 2 1 6 6 C 1.52997 * 109.47345 * 304.99634 * 4 2 1 7 7 N 1.46504 * 109.47417 * 174.99891 * 6 4 2 8 8 C 1.34777 * 119.99841 * 180.02562 * 7 6 4 9 9 O 1.21578 * 120.00454 * 359.97438 * 8 7 6 10 10 C 1.47622 * 119.99837 * 180.02562 * 8 7 6 11 11 N 1.31874 * 126.45428 * 0.02562 * 10 8 7 12 12 N 1.28474 * 110.15004 * 179.72245 * 11 10 8 13 13 H 0.96998 * 124.92990 * 180.25014 * 12 11 10 14 14 C 1.35727 * 110.13375 * 0.42391 * 12 11 10 15 15 C 1.35542 * 107.11540 * 359.58587 * 14 12 11 16 16 F 1.35103 * 127.24387 * 180.28162 * 15 14 12 17 17 N 1.46902 * 109.47453 * 65.00216 * 4 2 1 18 18 C 1.46901 * 111.00156 * 84.99786 * 17 4 2 19 19 C 1.50701 * 109.47152 * 180.02562 * 18 17 4 20 20 O 1.21298 * 119.99724 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99496 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00557 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99644 * 180.02562 * 22 21 19 25 25 N 1.31405 * 120.00110 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99836 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47374 * 59.99919 * 26 24 22 28 28 H 1.48497 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47001 * 299.99827 * 26 24 22 30 30 H 1.08999 * 109.47124 * 299.99954 * 1 2 3 31 31 H 1.08993 * 109.47246 * 59.99965 * 1 2 3 32 32 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47124 * 240.00046 * 2 1 3 34 34 H 1.09003 * 109.47020 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47148 * 300.00095 * 3 2 1 36 36 H 1.08999 * 109.47143 * 60.00057 * 3 2 1 37 37 H 1.09007 * 109.46788 * 55.00228 * 6 4 2 38 38 H 1.09001 * 109.47685 * 295.00381 * 6 4 2 39 39 H 0.96994 * 119.99909 * 0.02562 * 7 6 4 40 40 H 1.08002 * 126.44421 * 179.85380 * 14 12 11 41 41 H 1.00900 * 110.99836 * 321.04114 * 17 4 2 42 42 H 1.09003 * 109.46941 * 300.00398 * 18 17 4 43 43 H 1.09002 * 109.46970 * 60.00267 * 18 17 4 44 44 H 0.96994 * 120.00397 * 359.97438 * 21 19 18 45 45 H 0.97005 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.4300 -0.0763 2.4953 7 7 1.8227 -0.8397 3.6824 8 6 1.3987 -0.4542 4.9023 9 8 0.6907 0.5274 5.0176 10 6 1.7949 -1.2232 6.0985 11 7 2.5552 -2.3004 6.1212 12 7 2.7038 -2.7119 7.3291 13 1 3.2255 -3.4862 7.5919 14 6 2.0217 -1.9079 8.1838 15 6 1.4305 -0.9430 7.4377 16 9 0.6571 0.0730 7.8791 17 7 1.6514 -2.1367 1.1904 18 6 2.6261 -2.9186 0.4180 19 6 2.1947 -4.3620 0.3792 20 8 1.1756 -4.7056 0.9402 21 7 2.9410 -5.2709 -0.2790 22 6 2.5487 -6.5841 -0.3138 23 1 1.6419 -6.8903 0.1864 24 6 3.3185 -7.5214 -0.9919 25 7 4.4222 -7.1490 -1.6001 26 14 2.7836 -9.3106 -1.0400 27 1 1.4483 -9.4110 -1.6819 28 1 3.7686 -10.1008 -1.8213 29 1 2.7085 -9.8421 0.3446 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 0.3435 -0.0736 2.4081 38 1 1.7896 0.9486 2.5871 39 1 2.3879 -1.6227 3.5904 40 1 1.9646 -2.0141 9.2571 41 1 0.7222 -2.2411 0.8113 42 1 2.6810 -2.5286 -0.5984 43 1 3.6063 -2.8446 0.8890 44 1 3.7557 -4.9961 -0.7279 45 1 4.9598 -7.8034 -2.0732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496596749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:02 Heat of formation + Delta-G solvation = -74.193366 kcal Electronic energy + Delta-G solvation = -29601.395986 eV Core-core repulsion = 25182.789902 eV Total energy + Delta-G solvation = -4418.606084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.70375 -43.69332 -40.78537 -40.11320 -38.96716 -35.98606 -35.26529 -34.29145 -33.21016 -32.94362 -31.60270 -29.74919 -28.26920 -27.70941 -26.02883 -24.93494 -23.84179 -22.82585 -21.39793 -21.08863 -20.45671 -19.91119 -19.76817 -18.28272 -17.86757 -17.49267 -17.29040 -16.94461 -16.65657 -16.48379 -16.33962 -16.05865 -15.85703 -15.62446 -15.54111 -15.24372 -15.20225 -14.70467 -14.49726 -14.10782 -13.75320 -13.55274 -13.54903 -13.41059 -13.11826 -12.90782 -12.76533 -12.51149 -12.41645 -12.13012 -12.12032 -12.07571 -11.72969 -11.49004 -11.43849 -11.31904 -10.70718 -10.31659 -10.08729 -9.99194 -9.93868 -9.29035 -8.45109 -5.93299 0.32295 0.81326 1.40048 1.42072 1.52518 1.73658 2.08864 2.12427 2.21794 2.29804 2.90132 3.08254 3.22662 3.52672 3.56351 3.76536 3.83784 3.88209 4.04550 4.07256 4.27321 4.34681 4.37173 4.42054 4.50100 4.62864 4.72047 4.75363 4.83436 4.91182 5.01880 5.07661 5.20493 5.22595 5.34335 5.39858 5.42501 5.51695 5.90277 5.93215 6.11226 6.38250 6.41505 6.62652 6.67302 7.12902 7.14972 7.59459 8.15237 8.72005 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.002918 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.107746 B = 9592.285484 C =12097.789015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.085 3.915 5 H 0.100 0.900 6 C 0.130 3.870 7 N -0.689 5.689 8 C 0.592 3.408 9 O -0.572 6.572 10 C -0.058 4.058 11 N -0.242 5.242 12 N -0.347 5.347 13 H 0.476 0.524 14 C 0.006 3.994 15 C -0.009 4.009 16 F -0.118 7.118 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.416 0.584 40 H 0.250 0.750 41 H 0.346 0.654 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 13.935 13.154 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.201 4.201 4 C -0.025 4.025 5 H 0.118 0.882 6 C 0.006 3.994 7 N -0.339 5.339 8 C 0.376 3.624 9 O -0.451 6.451 10 C -0.218 4.218 11 N -0.080 5.080 12 N -0.066 5.066 13 H 0.327 0.673 14 C -0.140 4.140 15 C -0.039 4.039 16 F -0.097 7.097 17 N -0.307 5.307 18 C -0.067 4.067 19 C 0.227 3.773 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.253 0.747 40 H 0.266 0.734 41 H 0.167 0.833 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.641 13.459 13.358 19.034 hybrid contribution -0.284 -0.641 -0.670 0.970 sum 1.357 12.818 12.688 18.087 Atomic orbital electron populations 1.21956 0.95200 1.01358 1.02705 1.21695 0.96391 0.98051 0.97686 1.21830 1.01524 0.94246 1.02510 1.21923 1.00894 0.86447 0.93264 0.88175 1.21610 1.00111 0.94849 0.82799 1.45668 1.51568 1.31660 1.04964 1.17037 0.79702 0.83087 0.82536 1.90780 1.39472 1.28251 1.86567 1.22113 1.06277 0.98628 0.94803 1.73689 1.17333 1.11270 1.05720 1.43268 1.36722 1.24555 1.02072 0.67306 1.23346 0.98402 0.92097 1.00135 1.17603 1.02337 0.92570 0.91363 1.91477 1.72610 1.56696 1.88872 1.60198 1.05679 1.07813 1.56963 1.21579 0.97506 0.89303 0.98297 1.20893 0.85335 0.88849 0.82253 1.90508 1.28351 1.82033 1.50020 1.41905 1.24146 1.07364 1.47617 1.19605 1.08971 0.84771 1.32914 0.90468 1.25981 0.95431 1.04009 0.95690 1.69658 1.14759 1.37057 1.34619 0.85040 0.78045 0.77059 0.78517 1.19866 1.19534 1.19714 0.91923 0.91376 0.93837 0.90717 0.91684 0.91835 0.92153 0.91887 0.89784 0.74732 0.73437 0.83341 0.91459 0.87407 0.76982 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.52 71.98 0.61 -2.49 16 2 C -0.12 -2.20 2.79 -10.79 -0.03 -2.23 16 3 C -0.14 -2.15 8.95 71.98 0.64 -1.51 16 4 C 0.08 1.84 1.96 44.91 0.09 1.93 16 5 H 0.10 1.92 7.80 -2.39 -0.02 1.90 16 6 C 0.13 3.13 4.67 86.38 0.40 3.54 16 7 N -0.69 -19.03 5.39 -466.17 -2.51 -21.54 16 8 C 0.59 18.75 7.82 86.72 0.68 19.42 16 9 O -0.57 -21.36 16.67 -3.96 -0.07 -21.43 16 10 C -0.06 -1.60 7.13 42.44 0.30 -1.29 16 11 N -0.24 -5.58 11.91 -48.15 -0.57 -6.16 16 12 N -0.35 -4.55 6.86 -56.99 -0.39 -4.94 16 13 H 0.48 2.10 8.96 -219.99 -1.97 0.12 16 14 C 0.01 0.08 12.06 83.47 1.01 1.08 16 15 C -0.01 -0.21 8.03 22.47 0.18 -0.03 16 16 F -0.12 -3.27 17.03 44.97 0.77 -2.50 16 17 N -0.67 -19.70 5.32 -495.57 -2.63 -22.34 16 18 C 0.07 2.07 5.96 85.56 0.51 2.58 16 19 C 0.44 20.14 7.82 87.66 0.69 20.83 16 20 O -0.62 -33.79 15.78 -3.09 -0.05 -33.84 16 21 N -0.57 -28.60 5.29 -306.98 -1.62 -30.23 16 22 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 26 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 H 0.06 1.26 6.23 -2.39 -0.01 1.24 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.02 6.43 -2.38 -0.02 1.00 16 33 H 0.07 1.46 7.35 -2.39 -0.02 1.44 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.91 6.68 -2.39 -0.02 0.89 16 37 H 0.06 1.68 6.06 -2.38 -0.01 1.67 16 38 H 0.08 1.85 6.81 -2.39 -0.02 1.84 16 39 H 0.42 11.52 7.86 -92.71 -0.73 10.79 16 40 H 0.25 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.35 11.19 6.26 -89.69 -0.56 10.63 16 42 H 0.07 1.87 7.36 -2.39 -0.02 1.85 16 43 H 0.11 2.99 8.06 -2.39 -0.02 2.97 16 44 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 45 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -78.67 380.78 -1.30 -79.97 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -2.90 Total: 43.27 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 6.36 Total: 23.89 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -7.45 Total: -133.79 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.11 Total: -55.27 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.77 Total: -2.50 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -78.67 -1.30 -79.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496596749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.781 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds