Wall clock time and date at job start Sat Apr 11 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 120.00065 * 2 1 4 4 H 1.48495 * 109.47118 * 270.00058 * 3 2 1 5 5 H 1.48502 * 109.47308 * 30.00268 * 3 2 1 6 6 H 1.48506 * 109.47004 * 150.00150 * 3 2 1 7 7 C 1.38948 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00147 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99632 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00303 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99702 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46940 * 179.97438 * 14 13 12 16 16 C 1.30998 * 119.99851 * 127.00736 * 15 14 13 17 17 C 1.50702 * 120.00172 * 7.56082 * 16 15 14 18 18 N 1.46497 * 109.46908 * 127.15413 * 17 16 15 19 19 C 1.34777 * 119.99614 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99802 * 180.02562 * 19 18 17 22 22 C 1.53002 * 109.47393 * 179.97438 * 21 19 18 23 23 O 1.42969 * 109.47008 * 294.99719 * 22 21 19 24 24 C 1.43087 * 113.77068 * 181.20087 * 23 22 21 25 25 C 1.53259 * 108.94151 * 57.97387 * 24 23 22 26 26 C 1.53258 * 108.84550 * 305.47241 * 25 24 23 27 27 O 1.42966 * 109.47696 * 174.99776 * 22 21 19 28 28 H 0.97004 * 119.99605 * 359.97438 * 1 2 3 29 29 H 0.96994 * 119.99751 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46835 * 59.99669 * 12 10 9 31 31 H 1.08998 * 109.46929 * 299.99810 * 12 10 9 32 32 H 1.00898 * 110.99586 * 303.95119 * 13 12 10 33 33 H 1.09005 * 109.46869 * 60.00445 * 14 13 12 34 34 H 1.08992 * 109.47472 * 300.00026 * 14 13 12 35 35 H 1.08003 * 119.99726 * 307.01019 * 15 14 13 36 36 H 1.08002 * 120.00002 * 187.55952 * 16 15 14 37 37 H 1.08993 * 109.47292 * 247.15791 * 17 16 15 38 38 H 1.09000 * 109.46967 * 7.15681 * 17 16 15 39 39 H 0.96999 * 120.00440 * 0.02562 * 18 17 16 40 40 H 1.09007 * 109.47260 * 299.99642 * 21 19 18 41 41 H 1.09003 * 109.47718 * 59.99561 * 21 19 18 42 42 H 1.09006 * 109.47263 * 54.99770 * 22 21 19 43 43 H 1.08999 * 109.56178 * 298.13307 * 24 23 22 44 44 H 1.09003 * 109.55951 * 177.80814 * 24 23 22 45 45 H 1.09004 * 109.57380 * 185.66735 * 25 24 23 46 46 H 1.08997 * 109.68110 * 65.34719 * 25 24 23 47 47 H 1.09005 * 109.56145 * 294.68869 * 26 25 24 48 48 H 1.08998 * 109.65486 * 174.41538 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8630 -0.0044 13 7 2.1982 -5.9796 -0.0047 14 6 1.4978 -7.2709 -0.0057 15 6 2.5073 -8.3899 -0.0066 16 6 2.4390 -9.3343 0.8986 17 6 1.2582 -9.3987 1.8328 18 7 0.6721 -10.7405 1.7873 19 6 -0.4027 -11.0325 2.5462 20 8 -0.8849 -10.1842 3.2665 21 6 -1.0052 -12.4130 2.4999 22 6 -2.2041 -12.4784 3.4482 23 8 -1.7563 -12.3063 4.7950 24 6 -2.8053 -12.3791 5.7654 25 6 -3.5074 -13.7354 5.6382 26 6 -3.9689 -13.9200 4.1885 27 8 -2.8460 -13.7492 3.3182 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0024 30 1 0.6173 -4.9197 -0.8946 31 1 0.6166 -4.9217 0.8853 32 1 2.8336 -5.9118 -0.7855 33 1 0.8733 -7.3447 -0.8961 34 1 0.8725 -7.3458 0.8838 35 1 3.2871 -8.4130 -0.7535 36 1 3.2288 -10.0669 0.9753 37 1 1.5864 -9.1798 2.8488 38 1 0.5120 -8.6657 1.5262 39 1 1.0576 -11.4189 1.2109 40 1 -1.3330 -12.6325 1.4837 41 1 -0.2590 -13.1458 2.8071 42 1 -2.9103 -11.6872 3.1962 43 1 -3.5232 -11.5784 5.5875 44 1 -2.3846 -12.2784 6.7659 45 1 -4.3710 -13.7633 6.3027 46 1 -2.8151 -14.5337 5.9055 47 1 -4.7310 -13.1776 3.9507 48 1 -4.3816 -14.9206 4.0596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497572771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:09 Heat of formation + Delta-G solvation = -142.682007 kcal Electronic energy + Delta-G solvation = -28290.352798 eV Core-core repulsion = 23959.944378 eV Total energy + Delta-G solvation = -4330.408420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60393 -39.58495 -38.33062 -37.02318 -36.04810 -35.03934 -33.88386 -33.65513 -32.83678 -31.19529 -30.67336 -27.96689 -26.41433 -26.22770 -24.76460 -23.74493 -23.14092 -21.60671 -20.72450 -19.53158 -18.89595 -18.02645 -17.80878 -17.17521 -17.02171 -16.52715 -16.29168 -15.84105 -15.76068 -15.42645 -15.24878 -15.16240 -14.65976 -14.58849 -14.30659 -13.78820 -13.71982 -13.65700 -13.52606 -13.41805 -13.06033 -12.76028 -12.49630 -12.28586 -11.97376 -11.84132 -11.55203 -11.54185 -11.52477 -11.47608 -11.02546 -10.82513 -10.44766 -10.37715 -10.22013 -10.19917 -10.06231 -9.57521 -9.49154 -9.11643 -8.44529 -8.03004 -7.93911 -6.39857 -3.80710 1.80872 2.39916 2.73156 3.19400 3.24258 3.27958 3.34274 3.46247 3.92712 4.14969 4.25141 4.26879 4.30974 4.43413 4.49373 4.58451 4.64499 4.76651 4.84617 4.86901 4.94183 5.03037 5.12551 5.19196 5.21790 5.26759 5.27661 5.35628 5.36590 5.56580 5.57798 5.63459 5.74758 5.81992 5.99688 6.12978 6.27703 6.37328 6.39537 6.60356 6.75548 7.18633 7.21664 7.57046 7.64950 7.96799 8.08149 8.63133 9.19624 9.56156 10.07588 10.77889 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.001490 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.309172 B =18781.635595 C =19985.429847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.069 3.931 15 C -0.111 4.111 16 C -0.183 4.183 17 C 0.141 3.859 18 N -0.726 5.726 19 C 0.517 3.483 20 O -0.526 6.526 21 C -0.128 4.128 22 C 0.263 3.737 23 O -0.378 6.378 24 C 0.058 3.942 25 C -0.194 4.194 26 C 0.059 3.941 27 O -0.397 6.397 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.401 0.599 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -31.334 4.852 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.131 4.131 16 C -0.202 4.202 17 C 0.018 3.982 18 N -0.378 5.378 19 C 0.303 3.697 20 O -0.402 6.402 21 C -0.168 4.168 22 C 0.168 3.832 23 O -0.298 6.298 24 C -0.019 4.019 25 C -0.232 4.232 26 C -0.017 4.017 27 O -0.318 6.318 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.235 0.765 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.586 -30.605 5.991 32.095 hybrid contribution -0.688 0.572 -1.024 1.360 sum -8.273 -30.032 4.967 31.545 Atomic orbital electron populations 1.69620 1.05942 1.28142 1.50605 1.25267 0.95641 0.99731 0.97323 0.85846 0.79255 0.80776 0.78337 1.20444 1.20929 1.19394 1.19713 0.93392 0.82240 1.47585 0.87901 1.41861 1.09215 1.04588 1.64349 1.19788 0.88377 0.84701 0.84490 1.90523 1.13745 1.87067 1.55413 1.21695 0.94349 0.90919 1.01324 1.60092 1.18690 0.99387 1.51378 1.21290 0.94920 0.88406 1.01310 1.22846 0.98942 0.94340 0.96928 1.22665 0.98583 1.01746 0.97202 1.20508 0.94031 0.83717 0.99901 1.45937 1.31547 1.14550 1.45805 1.20174 0.80410 0.89406 0.79753 1.90768 1.61099 1.49298 1.38996 1.21452 0.97964 0.96344 1.01020 1.22855 0.92452 0.84775 0.83142 1.88168 1.34009 1.91991 1.15677 1.22629 0.90476 0.95389 0.93370 1.22814 1.02367 0.99765 0.98233 1.22648 0.87706 1.02765 0.88613 1.88042 1.45209 1.37252 1.61250 0.91884 0.77438 0.93796 0.89488 0.83114 0.94503 0.89641 0.86552 0.86395 0.90593 0.89965 0.76513 0.86553 0.87146 0.91655 0.92604 0.88232 0.89629 0.89995 0.92647 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.62 7.82 -10.99 -0.09 10.54 16 11 O -0.58 -16.11 15.78 5.54 0.09 -16.02 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.66 -10.88 6.11 -116.34 -0.71 -11.59 16 14 C 0.07 0.85 5.77 -4.97 -0.03 0.83 16 15 C -0.11 -1.14 9.77 -36.02 -0.35 -1.49 16 16 C -0.18 -1.62 9.63 -36.02 -0.35 -1.97 16 17 C 0.14 1.41 5.76 -5.19 -0.03 1.38 16 18 N -0.73 -5.87 5.55 -61.48 -0.34 -6.21 16 19 C 0.52 5.26 7.71 -10.99 -0.08 5.17 16 20 O -0.53 -7.70 15.42 -8.83 -0.14 -7.83 16 21 C -0.13 -0.94 5.78 -27.88 -0.16 -1.10 16 22 C 0.26 2.46 2.80 37.16 0.10 2.57 16 23 O -0.38 -4.15 9.77 -64.75 -0.63 -4.78 16 24 C 0.06 0.45 6.96 37.29 0.26 0.71 16 25 C -0.19 -1.10 6.35 -26.46 -0.17 -1.27 16 26 C 0.06 0.36 6.96 37.29 0.26 0.62 16 27 O -0.40 -3.45 10.54 -59.03 -0.62 -4.07 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.35 5.78 8.42 -39.29 -0.33 5.45 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.07 5.30 -51.93 -0.28 0.79 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.93 5.30 -51.93 -0.28 0.65 16 39 H 0.40 1.98 8.46 -40.82 -0.35 1.63 16 40 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.65 7.96 -51.93 -0.41 0.23 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -35.95 401.66 -8.96 -44.90 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -7.39 Total: 13.26 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.91 Total: 8.72 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.39 Total: -56.50 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.30 Total: -32.70 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.95 -8.96 -44.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497572771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.778 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds