Wall clock time and date at job start Sat Apr 11 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99775 * 2 1 4 4 H 1.48500 * 109.47158 * 270.00369 * 3 2 1 5 5 H 1.48507 * 109.47316 * 29.99965 * 3 2 1 6 6 H 1.48496 * 109.47407 * 149.99931 * 3 2 1 7 7 C 1.38946 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00088 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00405 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99540 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46997 * 179.97438 * 12 10 9 14 14 C 1.46908 * 110.99962 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46772 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.51702 * 304.89923 * 15 14 13 17 17 C 1.53295 * 109.51059 * 184.74589 * 15 14 13 18 18 N 1.47151 * 108.38744 * 187.77214 * 17 15 14 19 19 C 1.34770 * 120.98286 * 230.80800 * 18 17 15 20 20 O 1.21283 * 120.00276 * 359.72507 * 19 18 17 21 21 C 1.50705 * 119.99787 * 179.71529 * 19 18 17 22 22 H 1.08995 * 110.33168 * 55.71138 * 21 19 18 23 23 C 1.54476 * 110.37689 * 293.45398 * 21 19 18 24 24 C 1.54503 * 104.06316 * 217.19258 * 23 21 19 25 25 C 1.54472 * 104.06620 * 359.97438 * 24 23 21 26 26 O 1.44428 * 110.36984 * 177.95533 * 21 19 18 27 27 C 1.47156 * 118.03191 * 50.53693 * 18 17 15 28 28 C 1.53292 * 108.38567 * 309.46391 * 27 18 17 29 29 O 1.42959 * 109.51323 * 65.00332 * 15 14 13 30 30 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99911 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47437 * 59.99647 * 12 10 9 33 33 H 1.08996 * 109.47094 * 299.99680 * 12 10 9 34 34 H 1.00906 * 110.99968 * 56.04882 * 13 12 10 35 35 H 1.09000 * 109.46903 * 60.00228 * 14 13 12 36 36 H 1.08996 * 109.46889 * 300.00316 * 14 13 12 37 37 H 1.09006 * 109.68244 * 68.04873 * 17 15 14 38 38 H 1.09000 * 109.68430 * 307.49758 * 17 15 14 39 39 H 1.09004 * 110.50696 * 335.83372 * 23 21 19 40 40 H 1.08994 * 110.50833 * 98.40494 * 23 21 19 41 41 H 1.09004 * 110.51252 * 118.64573 * 24 23 21 42 42 H 1.09004 * 110.50762 * 241.35063 * 24 23 21 43 43 H 1.09001 * 110.37451 * 142.81057 * 25 24 23 44 44 H 1.09007 * 110.37441 * 265.04034 * 25 24 23 45 45 H 1.08995 * 109.67998 * 69.19035 * 27 18 17 46 46 H 1.09004 * 109.67914 * 189.74201 * 27 18 17 47 47 H 1.08999 * 109.50966 * 172.22668 * 28 27 18 48 48 H 1.09000 * 109.51113 * 292.37913 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0020 12 6 5.5608 -2.3703 -0.0011 13 7 6.0505 -3.7553 -0.0017 14 6 7.5191 -3.7945 -0.0023 15 6 7.9904 -5.2500 -0.0036 16 1 7.5437 -5.7782 0.8388 17 6 9.5181 -5.2936 0.1153 18 7 9.9590 -6.6844 -0.0761 19 6 10.7883 -7.2769 0.8057 20 8 11.1864 -6.6613 1.7718 21 6 11.2209 -8.7045 0.5912 22 1 11.6812 -8.8174 -0.3903 23 6 10.0145 -9.6590 0.7326 24 6 10.6019 -10.9055 1.4315 25 6 12.0937 -10.5570 1.6292 26 8 12.1404 -9.1123 1.6276 27 6 9.4629 -7.4111 -1.2556 28 6 7.9379 -7.2644 -1.3078 29 8 7.5952 -5.8788 -1.2252 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3632 0.0004 32 1 5.9242 -1.8572 0.8894 33 1 5.9241 -1.8558 -0.8906 34 1 5.6750 -4.2713 -0.7833 35 1 7.8963 -3.2908 0.8877 36 1 7.8955 -3.2902 -0.8922 37 1 9.8195 -4.9457 1.1034 38 1 9.9642 -4.6585 -0.6500 39 1 9.2388 -9.2053 1.3494 40 1 9.6172 -9.9201 -0.2482 41 1 10.1164 -11.0681 2.3938 42 1 10.4964 -11.7848 0.7960 43 1 12.4515 -10.9472 2.5820 44 1 12.6890 -10.9573 0.8084 45 1 9.9034 -6.9891 -2.1589 46 1 9.7277 -8.4654 -1.1754 47 1 7.5644 -7.6766 -2.2451 48 1 7.4918 -7.8004 -0.4700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502035695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:24:12 Heat of formation + Delta-G solvation = -169.079489 kcal Electronic energy + Delta-G solvation = -29826.572398 eV Core-core repulsion = 25495.019297 eV Total energy + Delta-G solvation = -4331.553101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.84506 -40.42009 -40.13521 -39.06824 -36.91934 -36.01283 -35.75584 -33.76559 -33.43365 -32.82017 -30.86170 -29.77501 -28.48432 -26.66501 -25.06700 -24.66606 -23.71849 -22.48236 -22.28662 -21.28529 -20.44487 -20.27048 -18.73063 -17.96723 -17.86439 -17.50572 -17.28267 -16.99975 -16.62722 -16.48052 -16.40010 -15.96514 -15.81146 -15.66983 -15.33047 -14.98140 -14.92671 -14.77016 -14.58345 -14.39138 -14.20633 -14.11505 -13.42756 -13.23612 -13.13417 -12.86173 -12.83743 -12.72954 -12.55542 -12.40963 -12.26477 -12.25997 -11.97733 -11.85503 -11.56780 -11.51162 -11.21522 -11.11040 -10.69988 -10.44615 -10.24795 -9.70485 -9.34852 -8.41045 -6.02087 1.31250 1.35760 1.36143 1.45369 1.53688 1.95713 2.23595 2.68064 2.70518 2.89915 3.15395 3.23462 3.33575 3.54370 3.76789 3.80580 3.88187 3.90450 4.02314 4.03152 4.13610 4.16617 4.23106 4.25603 4.33533 4.40991 4.45601 4.53600 4.59260 4.63873 4.67132 4.76250 4.77990 4.84396 4.90137 4.95708 4.98104 5.09912 5.20288 5.52549 5.69288 5.88853 6.01557 6.13834 6.16157 6.36461 6.60017 6.88112 6.94138 7.39753 7.96491 8.76589 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001788 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.816189 B =15657.949666 C =15959.499205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.687 5.687 14 C 0.071 3.929 15 C 0.090 3.910 16 H 0.053 0.947 17 C 0.090 3.910 18 N -0.609 5.609 19 C 0.514 3.486 20 O -0.574 6.574 21 C 0.058 3.942 22 H 0.126 0.874 23 C -0.145 4.145 24 C -0.149 4.149 25 C 0.033 3.967 26 O -0.388 6.388 27 C 0.065 3.935 28 C 0.041 3.959 29 O -0.389 6.389 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.349 0.651 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.133 0.867 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.195 -18.652 -5.177 35.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.319 5.319 14 C -0.058 4.058 15 C 0.031 3.969 16 H 0.071 0.929 17 C -0.034 4.034 18 N -0.344 5.344 19 C 0.303 3.697 20 O -0.452 6.452 21 C -0.002 4.002 22 H 0.144 0.856 23 C -0.183 4.183 24 C -0.187 4.187 25 C -0.042 4.042 26 O -0.307 6.307 27 C -0.056 4.056 28 C -0.035 4.035 29 O -0.308 6.308 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.143 0.857 47 H 0.150 0.850 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 28.805 -18.773 -3.985 34.613 hybrid contribution -0.225 1.059 -0.445 1.170 sum 28.580 -17.714 -4.430 33.915 Atomic orbital electron populations 1.69807 1.08145 1.29258 1.50278 1.26131 0.96493 1.02753 0.96031 0.85350 0.79483 0.76620 0.79973 1.18033 1.20057 1.15456 1.19014 0.81538 0.94943 1.50406 0.92731 1.42023 1.05803 1.07593 1.67782 1.20993 0.91033 0.83306 0.81100 1.90542 1.71422 1.32864 1.55117 1.21645 0.89542 0.91698 1.04187 1.60052 1.07789 1.12213 1.51879 1.21988 0.86982 0.93940 1.02865 1.22350 0.92592 0.94468 0.87471 0.92851 1.22199 0.94114 0.82847 1.04217 1.48127 1.47039 1.13844 1.25371 1.20951 0.78051 0.89116 0.81612 1.90707 1.56685 1.66575 1.31239 1.23041 0.92350 0.90439 0.94402 0.85647 1.23096 0.96197 0.94910 1.04048 1.22966 0.94922 0.98566 1.02248 1.23783 0.97250 0.79234 1.03979 1.89283 1.62771 1.22703 1.55927 1.22933 0.95276 0.99664 0.87762 1.23206 0.93753 0.82114 1.04470 1.87965 1.80891 1.24354 1.37625 0.91138 0.77410 0.86651 0.90220 0.83239 0.88078 0.92530 0.89358 0.88824 0.91959 0.85726 0.90944 0.87000 0.88373 0.89572 0.88392 0.85681 0.84958 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.96 21.66 0.30 -56.44 16 2 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 3 Si 0.97 38.99 27.74 68.60 1.90 40.89 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -19.57 10.16 84.04 0.85 -18.71 16 8 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -28.17 5.09 -307.00 -1.56 -29.73 16 10 C 0.45 20.60 7.82 87.66 0.69 21.28 16 11 O -0.61 -34.88 15.78 -3.06 -0.05 -34.93 16 12 C 0.06 1.90 6.17 85.56 0.53 2.43 16 13 N -0.69 -20.94 6.13 -517.92 -3.17 -24.12 16 14 C 0.07 1.53 5.39 86.30 0.47 1.99 16 15 C 0.09 1.87 3.02 30.69 0.09 1.96 16 16 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 17 C 0.09 1.64 5.93 86.35 0.51 2.15 16 18 N -0.61 -10.04 3.02 -817.35 -2.47 -12.51 16 19 C 0.51 11.04 7.01 87.66 0.61 11.65 16 20 O -0.57 -18.44 16.02 15.33 0.25 -18.20 16 21 C 0.06 0.82 2.76 30.35 0.08 0.90 16 22 H 0.13 0.92 7.83 -2.39 -0.02 0.90 16 23 C -0.14 -1.22 5.61 31.61 0.18 -1.04 16 24 C -0.15 -1.00 7.09 31.61 0.22 -0.78 16 25 C 0.03 0.33 7.63 72.48 0.55 0.88 16 26 O -0.39 -7.78 10.92 -130.61 -1.43 -9.21 16 27 C 0.07 0.55 6.25 86.35 0.54 1.09 16 28 C 0.04 0.51 6.99 72.08 0.50 1.01 16 29 O -0.39 -7.87 9.90 -148.98 -1.48 -9.35 16 30 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.39 15.32 5.76 -92.70 -0.53 14.79 16 32 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.35 11.79 7.99 -89.69 -0.72 11.08 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.93 7.08 -2.38 -0.02 1.91 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 0.80 7.87 -2.38 -0.02 0.79 16 40 H 0.12 0.13 6.58 -2.39 -0.02 0.12 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.60 16 42 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.13 0.30 4.10 -2.39 -0.01 0.29 16 47 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -90.84 385.35 -1.72 -92.56 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.31 Total: 36.61 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.30 Total: 24.42 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -6.90 Total: -122.80 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -2.70 Total: -71.69 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.90 Total: 40.89 kcal Total: -90.84 -1.72 -92.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502035695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.518 kcal (2) G-P(sol) polarization free energy of solvation -90.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds