Wall clock time and date at job start Sat Apr 11 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48503 * 109.47211 * 239.99615 * 3 2 1 5 5 H 1.48490 * 109.47526 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46937 * 120.00239 * 3 2 1 7 7 C 1.38809 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00022 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00040 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.49872 * 299.93992 * 10 9 7 12 12 O 1.42902 * 109.47412 * 60.05994 * 11 10 9 13 13 C 1.53042 * 109.49539 * 60.00381 * 10 9 7 14 14 C 1.53035 * 109.54021 * 58.58287 * 13 10 9 15 15 C 1.53196 * 109.30995 * 61.36728 * 14 13 10 16 16 N 1.46929 * 108.77486 * 305.36045 * 15 14 13 17 17 C 1.34766 * 120.63348 * 233.63046 * 16 15 14 18 18 O 1.21280 * 120.00139 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99940 * 0.02562 * 17 16 15 20 20 H 1.08994 * 109.87294 * 303.98817 * 19 17 16 21 21 C 1.54099 * 109.88003 * 65.00228 * 19 17 16 22 22 C 1.54810 * 104.19168 * 121.45440 * 21 19 17 23 23 C 1.54997 * 102.09323 * 20.87687 * 22 21 19 24 24 H 1.09000 * 110.61450 * 81.47773 * 23 22 21 25 25 C 1.50696 * 110.61976 * 204.32117 * 23 22 21 26 26 N 1.34778 * 119.99684 * 294.99909 * 25 23 22 27 27 O 1.21283 * 120.00030 * 115.00234 * 25 23 22 28 28 O 1.43749 * 109.87959 * 182.82928 * 19 17 16 29 29 C 1.46924 * 118.73409 * 53.61317 * 16 15 14 30 30 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00233 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47491 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47027 * 300.06527 * 11 10 9 34 34 H 0.96700 * 114.00123 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46156 * 298.56282 * 13 10 9 36 36 H 1.08999 * 109.45763 * 178.60993 * 13 10 9 37 37 H 1.09001 * 109.49969 * 301.41757 * 14 13 10 38 38 H 1.09001 * 109.50249 * 181.31372 * 14 13 10 39 39 H 1.08998 * 109.58804 * 65.15483 * 15 14 13 40 40 H 1.09003 * 109.58394 * 185.58059 * 15 14 13 41 41 H 1.09004 * 110.48806 * 240.13206 * 21 19 17 42 42 H 1.09005 * 110.48800 * 2.77388 * 21 19 17 43 43 H 1.08995 * 110.90784 * 139.08002 * 22 21 19 44 44 H 1.09005 * 110.90492 * 262.68210 * 22 21 19 45 45 H 0.97001 * 120.00005 * 0.02562 * 26 25 23 46 46 H 0.97004 * 119.99885 * 179.97438 * 26 25 23 47 47 H 1.08999 * 109.58511 * 186.60055 * 29 16 15 48 48 H 1.08999 * 109.58969 * 66.17655 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 2.9369 -3.7391 -1.2503 12 8 3.8667 -2.6539 -1.2512 13 6 2.9382 -3.7384 1.2489 14 6 2.0637 -3.6223 2.4994 15 6 1.0689 -4.7869 2.5318 16 7 0.3174 -4.8021 1.2692 17 6 -1.0302 -4.7980 1.2721 18 8 -1.6389 -4.8103 0.2232 19 6 -1.7809 -4.7769 2.5787 20 1 -1.4711 -5.6190 3.1976 21 6 -1.5069 -3.4536 3.3192 22 6 -2.9091 -2.8234 3.5018 23 6 -3.8398 -4.0540 3.3541 24 1 -3.8930 -4.6095 4.2905 25 6 -5.2163 -3.6284 2.9124 26 7 -5.9782 -2.8666 3.7221 27 8 -5.6384 -3.9713 1.8284 28 8 -3.1953 -4.8429 2.3310 29 6 1.0633 -4.8216 0.0036 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.4814 -4.6833 -1.2501 33 1 2.3097 -3.6809 -2.1399 34 1 4.4578 -2.6431 -2.0165 35 1 3.6634 -2.9248 1.2361 36 1 3.4641 -4.6931 1.2608 37 1 1.5186 -2.6787 2.4758 38 1 2.6935 -3.6571 3.3884 39 1 1.6096 -5.7263 2.6467 40 1 0.3794 -4.6553 3.3657 41 1 -1.0463 -3.6468 4.2881 42 1 -0.8720 -2.8037 2.7169 43 1 -3.0089 -2.3766 4.4910 44 1 -3.1096 -2.0883 2.7224 45 1 -5.6405 -2.5921 4.5890 46 1 -6.8641 -2.5923 3.4377 47 1 0.3702 -4.7131 -0.8307 48 1 1.6036 -5.7639 -0.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502588931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:43 Heat of formation + Delta-G solvation = -135.032740 kcal Electronic energy + Delta-G solvation = -32588.379737 eV Core-core repulsion = 28258.303014 eV Total energy + Delta-G solvation = -4330.076723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72707 -39.65041 -38.36637 -37.29726 -35.74557 -33.92247 -33.86335 -32.34962 -31.78404 -31.33543 -30.06233 -28.54260 -25.75494 -25.41382 -23.96942 -23.37301 -22.02344 -21.72868 -20.62213 -19.49103 -18.29512 -17.80958 -17.44468 -17.22077 -16.62569 -16.34193 -16.30544 -15.69951 -15.01050 -14.89482 -14.62721 -14.49904 -14.17631 -14.08080 -13.82100 -13.54262 -13.37452 -13.33320 -13.05439 -12.71324 -12.33526 -12.10220 -11.97514 -11.85850 -11.76465 -11.53741 -11.19392 -10.96390 -10.76766 -10.72385 -10.37835 -10.34288 -10.26679 -10.07070 -9.91174 -9.81266 -9.76714 -9.53347 -9.15603 -8.95751 -8.73837 -8.21078 -6.84219 -5.58462 -2.86294 2.54270 2.80174 2.94447 3.32922 3.51455 3.56855 3.57954 4.03797 4.34775 4.59096 4.70067 4.72051 4.77714 4.86157 4.89361 5.04924 5.07698 5.29270 5.35946 5.39777 5.44097 5.54974 5.61811 5.65806 5.75914 5.81245 5.88931 5.91992 5.94685 6.06483 6.12750 6.14519 6.15959 6.36415 6.50190 6.54163 6.69276 6.77004 6.90434 6.98145 7.09165 7.18267 7.72385 8.10075 8.18118 8.36165 8.55812 8.59137 9.70820 10.22804 10.59602 11.63726 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.004224 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.387451 B = 6627.338887 C = 7962.558917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.023 4.023 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.208 4.208 8 H 0.091 0.909 9 N -0.704 5.704 10 C 0.189 3.811 11 C 0.074 3.926 12 O -0.539 6.539 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.597 5.597 17 C 0.517 3.483 18 O -0.514 6.514 19 C 0.063 3.937 20 H 0.093 0.907 21 C -0.147 4.147 22 C -0.140 4.140 23 C 0.055 3.945 24 H 0.098 0.902 25 C 0.523 3.477 26 N -0.854 5.854 27 O -0.513 6.513 28 O -0.317 6.317 29 C 0.117 3.883 30 H 0.250 0.750 31 H 0.384 0.616 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.353 0.647 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.400 0.600 46 H 0.404 0.596 47 H 0.093 0.907 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -10.573 13.345 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.218 4.218 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.339 4.339 8 H 0.109 0.891 9 N -0.345 5.345 10 C 0.096 3.904 11 C -0.007 4.007 12 O -0.342 6.342 13 C -0.155 4.155 14 C -0.167 4.167 15 C -0.018 4.018 16 N -0.332 5.332 17 C 0.303 3.697 18 O -0.387 6.387 19 C 0.001 3.999 20 H 0.111 0.889 21 C -0.185 4.185 22 C -0.178 4.178 23 C -0.006 4.006 24 H 0.115 0.885 25 C 0.306 3.694 26 N -0.420 5.420 27 O -0.386 6.386 28 O -0.234 6.234 29 C -0.006 4.006 30 H 0.060 0.940 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.198 0.802 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.229 0.771 46 H 0.236 0.764 47 H 0.112 0.888 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.938 -10.751 12.395 16.522 hybrid contribution 0.479 1.245 -0.046 1.335 sum -1.460 -9.505 12.349 15.652 Atomic orbital electron populations 1.69685 1.04903 1.25122 1.59122 1.24735 0.95331 0.97359 1.04334 0.86328 0.78322 0.84230 0.77609 1.21656 1.22331 1.21780 1.19500 0.91857 0.83108 1.39466 0.89150 1.42415 1.05391 0.99140 1.87546 1.19948 0.90393 0.87707 0.92393 1.22715 0.91023 0.87494 0.99429 1.86826 1.50147 1.49719 1.47506 1.21839 0.98309 1.00362 0.95029 1.21823 0.97615 0.99425 0.97834 1.21883 0.95142 0.99240 0.85506 1.47746 1.04600 1.73482 1.07357 1.20210 0.82005 0.76804 0.90687 1.90748 1.67155 1.47838 1.33004 1.22654 0.83188 0.99241 0.94784 0.88933 1.23048 0.98423 0.95573 1.01434 1.23117 0.93488 0.97219 1.04000 1.23017 0.91659 0.93424 0.92513 0.88498 1.20174 0.86417 0.78165 0.84660 1.43699 1.20588 1.55962 1.21777 1.90819 1.72842 1.53848 1.21119 1.89130 1.15407 1.69253 1.49608 1.21686 0.94769 0.97404 0.86734 0.93990 0.78166 0.95839 0.94367 0.80202 0.90649 0.94058 0.89243 0.92216 0.91959 0.90376 0.89386 0.87725 0.89127 0.89023 0.77142 0.76415 0.88843 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.48 13.06 55.49 0.72 -27.75 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 3 Si 0.90 22.82 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.21 -5.55 8.29 -15.06 -0.12 -5.67 16 8 H 0.09 2.41 5.31 -52.48 -0.28 2.14 16 9 N -0.70 -16.90 4.22 -47.12 -0.20 -17.10 16 10 C 0.19 3.54 0.68 -131.70 -0.09 3.45 16 11 C 0.07 1.31 6.08 37.15 0.23 1.53 16 12 O -0.54 -10.02 9.97 -35.23 -0.35 -10.37 16 13 C -0.12 -1.93 4.39 -26.69 -0.12 -2.04 16 14 C -0.13 -1.92 5.93 -26.61 -0.16 -2.08 16 15 C 0.11 1.32 5.83 -3.71 -0.02 1.30 16 16 N -0.60 -9.66 2.87 -172.77 -0.50 -10.15 16 17 C 0.52 9.57 6.89 -10.99 -0.08 9.50 16 18 O -0.51 -12.13 15.94 -14.02 -0.22 -12.36 16 19 C 0.06 0.91 2.96 -27.31 -0.08 0.83 16 20 H 0.09 1.02 7.76 -51.93 -0.40 0.61 16 21 C -0.15 -1.84 4.94 -25.20 -0.12 -1.96 16 22 C -0.14 -1.63 6.57 -24.72 -0.16 -1.80 16 23 C 0.06 0.68 3.76 -26.83 -0.10 0.58 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 C 0.52 7.23 7.48 -10.99 -0.08 7.15 16 26 N -0.85 -7.04 8.86 31.22 0.28 -6.76 16 27 O -0.51 -10.15 17.41 -13.43 -0.23 -10.38 16 28 O -0.32 -5.47 10.03 -64.27 -0.64 -6.11 16 29 C 0.12 2.00 5.14 -3.71 -0.02 1.98 16 30 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.45 7.65 -40.82 -0.31 10.14 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.35 4.88 9.12 45.56 0.42 5.30 16 35 H 0.07 1.45 6.82 -51.93 -0.35 1.10 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.68 7.53 -51.93 -0.39 1.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.81 4.41 -51.93 -0.23 0.58 16 41 H 0.09 0.76 7.55 -51.93 -0.39 0.37 16 42 H 0.10 1.71 7.51 -51.93 -0.39 1.32 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 45 H 0.40 1.82 8.83 -40.82 -0.36 1.46 16 46 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 47 H 0.09 1.85 7.00 -51.93 -0.36 1.49 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -40.01 377.57 -7.86 -47.87 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -6.36 Total: 17.62 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.03 Total: 12.02 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.31 Total: -61.76 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.45 Total: -39.23 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -40.01 -7.86 -47.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502588931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.160 kcal (2) G-P(sol) polarization free energy of solvation -40.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds