Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48503 * 109.47211 * 239.99615 * 3 2 1 5 5 H 1.48490 * 109.47526 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46937 * 120.00239 * 3 2 1 7 7 C 1.38809 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00022 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00040 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.49872 * 299.93992 * 10 9 7 12 12 O 1.42902 * 109.47412 * 60.05994 * 11 10 9 13 13 C 1.53042 * 109.49539 * 60.00381 * 10 9 7 14 14 C 1.53035 * 109.54021 * 58.58287 * 13 10 9 15 15 C 1.53196 * 109.30995 * 61.36728 * 14 13 10 16 16 N 1.46929 * 108.77486 * 305.36045 * 15 14 13 17 17 C 1.34766 * 120.63348 * 233.63046 * 16 15 14 18 18 O 1.21280 * 120.00139 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99940 * 0.02562 * 17 16 15 20 20 H 1.08994 * 109.87294 * 303.98817 * 19 17 16 21 21 C 1.54099 * 109.88003 * 65.00228 * 19 17 16 22 22 C 1.54810 * 104.19168 * 121.45440 * 21 19 17 23 23 C 1.54997 * 102.09323 * 20.87687 * 22 21 19 24 24 H 1.09000 * 110.61450 * 81.47773 * 23 22 21 25 25 C 1.50696 * 110.61976 * 204.32117 * 23 22 21 26 26 N 1.34778 * 119.99684 * 294.99909 * 25 23 22 27 27 O 1.21283 * 120.00030 * 115.00234 * 25 23 22 28 28 O 1.43749 * 109.87959 * 182.82928 * 19 17 16 29 29 C 1.46924 * 118.73409 * 53.61317 * 16 15 14 30 30 H 0.96996 * 120.00117 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00233 * 0.02562 * 9 7 2 32 32 H 1.08993 * 109.47491 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47027 * 300.06527 * 11 10 9 34 34 H 0.96700 * 114.00123 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46156 * 298.56282 * 13 10 9 36 36 H 1.08999 * 109.45763 * 178.60993 * 13 10 9 37 37 H 1.09001 * 109.49969 * 301.41757 * 14 13 10 38 38 H 1.09001 * 109.50249 * 181.31372 * 14 13 10 39 39 H 1.08998 * 109.58804 * 65.15483 * 15 14 13 40 40 H 1.09003 * 109.58394 * 185.58059 * 15 14 13 41 41 H 1.09004 * 110.48806 * 240.13206 * 21 19 17 42 42 H 1.09005 * 110.48800 * 2.77388 * 21 19 17 43 43 H 1.08995 * 110.90784 * 139.08002 * 22 21 19 44 44 H 1.09005 * 110.90492 * 262.68210 * 22 21 19 45 45 H 0.97001 * 120.00005 * 0.02562 * 26 25 23 46 46 H 0.97004 * 119.99885 * 179.97438 * 26 25 23 47 47 H 1.08999 * 109.58511 * 186.60055 * 29 16 15 48 48 H 1.08999 * 109.58969 * 66.17655 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 2.9369 -3.7391 -1.2503 12 8 3.8667 -2.6539 -1.2512 13 6 2.9382 -3.7384 1.2489 14 6 2.0637 -3.6223 2.4994 15 6 1.0689 -4.7869 2.5318 16 7 0.3174 -4.8021 1.2692 17 6 -1.0302 -4.7980 1.2721 18 8 -1.6389 -4.8103 0.2232 19 6 -1.7809 -4.7769 2.5787 20 1 -1.4711 -5.6190 3.1976 21 6 -1.5069 -3.4536 3.3192 22 6 -2.9091 -2.8234 3.5018 23 6 -3.8398 -4.0540 3.3541 24 1 -3.8930 -4.6095 4.2905 25 6 -5.2163 -3.6284 2.9124 26 7 -5.9782 -2.8666 3.7221 27 8 -5.6384 -3.9713 1.8284 28 8 -3.1953 -4.8429 2.3310 29 6 1.0633 -4.8216 0.0036 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 3.4814 -4.6833 -1.2501 33 1 2.3097 -3.6809 -2.1399 34 1 4.4578 -2.6431 -2.0165 35 1 3.6634 -2.9248 1.2361 36 1 3.4641 -4.6931 1.2608 37 1 1.5186 -2.6787 2.4758 38 1 2.6935 -3.6571 3.3884 39 1 1.6096 -5.7263 2.6467 40 1 0.3794 -4.6553 3.3657 41 1 -1.0463 -3.6468 4.2881 42 1 -0.8720 -2.8037 2.7169 43 1 -3.0089 -2.3766 4.4910 44 1 -3.1096 -2.0883 2.7224 45 1 -5.6405 -2.5921 4.5890 46 1 -6.8641 -2.5923 3.4377 47 1 0.3702 -4.7131 -0.8307 48 1 1.6036 -5.7639 -0.0878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502588931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -171.283528 kcal Electronic energy + Delta-G solvation = -32589.951689 eV Core-core repulsion = 28258.303014 eV Total energy + Delta-G solvation = -4331.648675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.90878 -40.86191 -39.63730 -38.67278 -37.15275 -35.58473 -34.88853 -33.95587 -33.00089 -32.65695 -31.31164 -30.24015 -27.01608 -26.67590 -25.63056 -24.91225 -23.15437 -22.90215 -21.60370 -20.85026 -19.69918 -19.13520 -18.80091 -18.39438 -17.92019 -17.77061 -17.38774 -16.99276 -16.57077 -16.18670 -15.86661 -15.77035 -15.67123 -15.40112 -15.25668 -14.91006 -14.73334 -14.67146 -14.52546 -14.03885 -13.72998 -13.45937 -13.34589 -13.13905 -12.85376 -12.76520 -12.68248 -12.61772 -12.52477 -12.05824 -12.00298 -11.74067 -11.65543 -11.45803 -11.41008 -11.25974 -10.91955 -10.74803 -10.72226 -10.54557 -10.42041 -9.52950 -8.85519 -7.75451 -5.01392 1.46515 1.49832 1.49981 1.55300 1.58781 1.74263 2.29355 2.65895 3.03513 3.33302 3.44374 3.59012 3.69491 3.75904 3.80993 3.86877 4.00766 4.04000 4.10999 4.19163 4.29794 4.32135 4.41319 4.50528 4.55143 4.58951 4.66180 4.70053 4.80161 4.82781 4.94351 4.94837 5.04150 5.07139 5.13164 5.35314 5.51568 5.62701 5.68586 5.76513 5.87169 5.92858 6.42142 6.44049 6.47896 7.12882 7.22587 7.30447 7.51263 8.23018 8.47209 9.48013 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.004224 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.387451 B = 6627.338887 C = 7962.558917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.095 4.095 3 Si 0.960 3.040 4 H -0.289 1.289 5 H -0.309 1.309 6 H -0.279 1.279 7 C -0.177 4.177 8 H 0.095 0.905 9 N -0.714 5.714 10 C 0.177 3.823 11 C 0.075 3.925 12 O -0.565 6.565 13 C -0.109 4.109 14 C -0.125 4.125 15 C 0.103 3.897 16 N -0.592 5.592 17 C 0.501 3.499 18 O -0.586 6.586 19 C 0.065 3.935 20 H 0.144 0.856 21 C -0.140 4.140 22 C -0.136 4.136 23 C 0.055 3.945 24 H 0.155 0.845 25 C 0.513 3.487 26 N -0.824 5.824 27 O -0.589 6.589 28 O -0.366 6.366 29 C 0.118 3.882 30 H 0.238 0.762 31 H 0.362 0.638 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.376 0.624 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.144 0.856 42 H 0.057 0.943 43 H 0.144 0.856 44 H 0.041 0.959 45 H 0.423 0.577 46 H 0.411 0.589 47 H 0.053 0.947 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -12.580 17.429 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.284 4.284 3 Si 0.792 3.208 4 H -0.216 1.216 5 H -0.236 1.236 6 H -0.205 1.205 7 C -0.310 4.310 8 H 0.112 0.888 9 N -0.352 5.352 10 C 0.086 3.914 11 C -0.005 4.005 12 O -0.370 6.370 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.017 4.017 16 N -0.325 5.325 17 C 0.289 3.711 18 O -0.465 6.465 19 C 0.005 3.995 20 H 0.161 0.839 21 C -0.178 4.178 22 C -0.174 4.174 23 C -0.005 4.005 24 H 0.172 0.828 25 C 0.298 3.702 26 N -0.390 5.390 27 O -0.469 6.469 28 O -0.284 6.284 29 C -0.005 4.005 30 H 0.047 0.953 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.162 0.838 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.060 0.940 45 H 0.255 0.745 46 H 0.243 0.757 47 H 0.071 0.929 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.532 -12.762 16.572 20.924 hybrid contribution -0.163 1.805 -1.328 2.247 sum 0.369 -10.957 15.245 18.777 Atomic orbital electron populations 1.69883 1.06447 1.24643 1.62550 1.25407 0.95945 1.00431 1.06636 0.85373 0.76897 0.80657 0.77829 1.21578 1.23642 1.20524 1.19763 0.91927 0.83957 1.35309 0.88754 1.42571 1.04453 1.00666 1.87549 1.20378 0.90988 0.85812 0.94270 1.22630 0.91034 0.89212 0.97649 1.86711 1.50710 1.50558 1.49054 1.21733 0.97510 1.01282 0.94265 1.21762 0.97883 0.98269 0.98388 1.22217 0.95151 0.99970 0.84406 1.47898 1.04281 1.71973 1.08372 1.21236 0.82760 0.75435 0.91639 1.90707 1.68727 1.51275 1.35786 1.22910 0.81844 1.01967 0.92800 0.83933 1.23073 0.98242 0.93659 1.02805 1.23138 0.92967 0.96121 1.05146 1.23405 0.90061 0.93732 0.93301 0.82788 1.20738 0.87472 0.77963 0.84056 1.43471 1.20186 1.53514 1.21848 1.90786 1.74556 1.57142 1.24376 1.89095 1.16936 1.70219 1.52183 1.21629 0.93875 0.98477 0.86520 0.95343 0.80712 0.91297 0.96498 0.77689 0.93414 0.90157 0.93908 0.88769 0.87842 0.87547 0.83782 0.92432 0.83821 0.93972 0.74471 0.75714 0.92869 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.12 13.06 21.65 0.28 -62.83 16 2 C -0.09 -5.58 5.50 84.86 0.47 -5.11 16 3 Si 0.96 48.43 29.55 68.60 2.03 50.45 16 4 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.18 -9.69 8.29 84.03 0.70 -8.99 16 8 H 0.09 5.06 5.31 -2.91 -0.02 5.04 16 9 N -0.71 -35.52 4.22 -302.99 -1.28 -36.80 16 10 C 0.18 6.49 0.68 3.68 0.00 6.50 16 11 C 0.08 2.54 6.08 71.98 0.44 2.98 16 12 O -0.56 -20.29 9.97 -148.98 -1.49 -21.77 16 13 C -0.11 -3.31 4.39 30.62 0.13 -3.17 16 14 C -0.12 -3.34 5.93 30.67 0.18 -3.16 16 15 C 0.10 2.16 5.83 86.36 0.50 2.66 16 16 N -0.59 -18.50 2.87 -818.91 -2.35 -20.85 16 17 C 0.50 18.93 6.89 87.66 0.60 19.53 16 18 O -0.59 -29.84 15.94 15.68 0.25 -29.59 16 19 C 0.07 1.79 2.96 30.22 0.09 1.88 16 20 H 0.14 2.43 7.76 -2.39 -0.02 2.41 16 21 C -0.14 -3.20 4.94 31.58 0.16 -3.04 16 22 C -0.14 -2.95 6.57 31.90 0.21 -2.74 16 23 C 0.06 1.26 3.76 30.53 0.11 1.38 16 24 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 25 C 0.51 14.25 7.48 87.66 0.66 14.91 16 26 N -0.82 -12.40 8.86 -173.53 -1.54 -13.94 16 27 O -0.59 -24.82 17.41 15.11 0.26 -24.55 16 28 O -0.37 -12.66 10.03 -121.21 -1.22 -13.88 16 29 C 0.12 4.00 5.14 86.36 0.44 4.44 16 30 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.36 21.07 7.65 -92.71 -0.71 20.36 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.38 9.78 9.12 -74.06 -0.68 9.10 16 35 H 0.05 1.73 6.82 -2.38 -0.02 1.72 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.57 7.53 -2.39 -0.02 1.56 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.11 1.63 4.41 -2.39 -0.01 1.62 16 41 H 0.14 1.63 7.55 -2.39 -0.02 1.62 16 42 H 0.06 1.92 7.51 -2.38 -0.02 1.90 16 43 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.04 1.33 8.05 -2.38 -0.02 1.31 16 45 H 0.42 2.50 8.83 -92.71 -0.82 1.69 16 46 H 0.41 5.67 8.93 -92.71 -0.83 4.84 16 47 H 0.05 2.24 7.00 -2.39 -0.02 2.23 16 48 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -101.69 377.57 -2.33 -104.03 By element: Atomic # 1 Polarization: 43.65 SS G_CDS: -1.99 Total: 41.67 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 4.70 Total: 28.06 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -4.88 Total: -134.42 kcal Atomic # 8 Polarization: -87.60 SS G_CDS: -2.19 Total: -89.79 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.45 kcal Total: -101.69 -2.33 -104.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502588931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.258 kcal (2) G-P(sol) polarization free energy of solvation -101.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds