Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47207 * 2 1 4 4 C 1.53001 * 109.46866 * 240.00047 * 2 1 3 5 5 O 1.45194 * 109.46786 * 120.00226 * 2 1 3 6 6 C 1.34638 * 117.00554 * 62.60621 * 5 2 1 7 7 O 1.21517 * 119.99440 * 354.89254 * 6 5 2 8 8 N 1.34775 * 120.00363 * 174.89229 * 6 5 2 9 9 C 1.46502 * 119.99750 * 185.01098 * 8 6 5 10 10 C 1.50705 * 112.84820 * 66.30474 * 9 8 6 11 11 O 1.21287 * 119.99629 * 205.46187 * 10 9 8 12 12 N 1.34770 * 119.99855 * 25.46850 * 10 9 8 13 13 C 1.46501 * 119.99925 * 185.01668 * 12 10 9 14 14 C 1.50699 * 109.47424 * 185.03727 * 13 12 10 15 15 O 1.21299 * 119.99971 * 5.13265 * 14 13 12 16 16 N 1.34775 * 120.00324 * 185.13846 * 14 13 12 17 17 C 1.37098 * 120.00151 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00152 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00041 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00288 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99840 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46738 * 90.00524 * 21 19 17 23 23 H 1.48500 * 109.46995 * 210.00096 * 21 19 17 24 24 H 1.48493 * 109.47330 * 330.00320 * 21 19 17 25 25 C 1.53783 * 113.61843 * 295.10708 * 9 8 6 26 26 C 1.53785 * 87.08118 * 220.01903 * 25 9 8 27 27 C 1.53780 * 87.17267 * 25.38945 * 26 25 9 28 28 H 1.08999 * 109.46833 * 304.56286 * 1 2 3 29 29 H 1.09000 * 109.46583 * 64.55824 * 1 2 3 30 30 H 1.09002 * 109.47263 * 184.55332 * 1 2 3 31 31 H 1.09003 * 109.46816 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47113 * 300.00041 * 3 2 1 33 33 H 1.09003 * 109.46793 * 60.00184 * 3 2 1 34 34 H 1.09007 * 109.47094 * 299.99910 * 4 2 1 35 35 H 1.08995 * 109.47259 * 60.00079 * 4 2 1 36 36 H 1.09003 * 109.46949 * 180.02562 * 4 2 1 37 37 H 0.96999 * 119.99995 * 5.02004 * 8 6 5 38 38 H 0.97002 * 120.00478 * 5.00440 * 12 10 9 39 39 H 1.09005 * 109.47047 * 305.03520 * 13 12 10 40 40 H 1.08999 * 109.47301 * 65.03492 * 13 12 10 41 41 H 0.96998 * 119.99617 * 359.97438 * 16 14 13 42 42 H 0.96997 * 120.00511 * 179.97438 * 20 19 17 43 43 H 1.09001 * 113.61270 * 105.47406 * 25 9 8 44 44 H 1.08997 * 113.61045 * 334.56464 * 25 9 8 45 45 H 1.09001 * 113.61397 * 139.97590 * 26 25 9 46 46 H 1.08998 * 113.61365 * 270.80176 * 26 25 9 47 47 H 1.09003 * 113.61511 * 89.15975 * 27 26 25 48 48 H 1.09005 * 113.61551 * 220.05598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6973 -1.9871 1.3114 7 8 0.9583 -2.5135 0.5031 8 7 2.2000 -2.7070 2.3338 9 6 1.9453 -4.1477 2.4101 10 6 2.6018 -4.9179 1.2934 11 8 2.1429 -5.9836 0.9403 12 7 3.6989 -4.4226 0.6874 13 6 4.2727 -5.1152 -0.4691 14 6 5.5522 -4.4329 -0.8793 15 8 5.9951 -3.5224 -0.2115 16 7 6.2044 -4.8344 -1.9884 17 6 7.3682 -4.2133 -2.3619 18 1 7.7626 -3.4027 -1.7672 19 6 8.0403 -4.6268 -3.5055 20 7 9.1560 -4.0319 -3.8633 21 14 7.3584 -6.0295 -4.5337 22 1 6.4436 -5.4850 -5.5690 23 1 8.4776 -6.7503 -5.1919 24 1 6.6122 -6.9681 -3.6579 25 6 0.4626 -4.5013 2.6135 26 6 0.9381 -5.5982 3.5808 27 6 2.1993 -4.7473 3.8051 28 1 -0.3633 0.5830 0.8463 29 1 -0.3632 0.4415 -0.9280 30 1 -0.3634 -1.0244 0.0816 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 2.7303 -2.2713 3.0193 38 1 4.1086 -3.6073 1.0167 39 1 4.4823 -6.1517 -0.2046 40 1 3.5645 -5.0877 -1.2972 41 1 5.8504 -5.5627 -2.5222 42 1 9.6254 -4.3208 -4.6615 43 1 -0.0208 -4.8895 1.7170 44 1 -0.1121 -3.7117 3.0975 45 1 0.3145 -5.6972 4.4694 46 1 1.1367 -6.5532 3.0944 47 1 2.1002 -4.0250 4.6154 48 1 3.1159 -5.3336 3.8692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556511742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = -126.268697 kcal Electronic energy + Delta-G solvation = -31659.688607 eV Core-core repulsion = 27329.991921 eV Total energy + Delta-G solvation = -4329.696686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36644 -40.22167 -38.72061 -37.58331 -36.73973 -34.71094 -34.32956 -33.84566 -33.02365 -31.81401 -28.39256 -27.49188 -27.38078 -26.07716 -25.92187 -24.27405 -22.56415 -21.43529 -20.09029 -19.80997 -19.35003 -18.50331 -18.25429 -17.75142 -16.43543 -16.24200 -15.89374 -15.78859 -15.46361 -15.16373 -14.93821 -14.64584 -14.56956 -14.37931 -13.94228 -13.69142 -13.48434 -13.09072 -12.67900 -12.58783 -12.50430 -12.46368 -12.26657 -12.19655 -11.98701 -11.94444 -11.93095 -11.76147 -11.44573 -11.32755 -11.26992 -11.22558 -10.75889 -10.65635 -10.41183 -10.19129 -10.07628 -10.02910 -9.71298 -9.17056 -8.92014 -8.77065 -8.31938 -6.42281 -3.94798 1.96865 2.58325 2.76312 2.98529 3.03358 3.10825 3.18741 3.54587 3.96296 4.02305 4.17474 4.29785 4.48738 4.58988 4.64905 4.67438 4.70321 4.84478 5.09822 5.12589 5.36459 5.38303 5.43790 5.49557 5.54817 5.59880 5.64425 5.66252 5.73781 5.74986 5.76009 5.79529 5.84570 5.89656 5.94457 5.97403 6.19921 6.25310 6.39958 6.45491 6.52694 7.25589 7.42307 7.67462 7.98262 8.26373 8.32693 8.44143 8.79966 9.28163 9.61646 10.69833 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.003697 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.578638 B = 7572.333952 C = 9449.793932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.141 4.141 4 C -0.187 4.187 5 O -0.363 6.363 6 C 0.652 3.348 7 O -0.553 6.553 8 N -0.704 5.704 9 C 0.146 3.854 10 C 0.533 3.467 11 O -0.535 6.535 12 N -0.699 5.699 13 C 0.105 3.895 14 C 0.438 3.562 15 O -0.578 6.578 16 N -0.576 5.576 17 C -0.310 4.310 18 H 0.121 0.879 19 C 0.046 3.954 20 N -0.874 5.874 21 Si 0.878 3.122 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.113 4.113 26 C -0.137 4.137 27 C -0.124 4.124 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.411 0.589 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.374 0.626 42 H 0.276 0.724 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.823 4.050 12.753 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.102 3.898 3 C -0.198 4.198 4 C -0.244 4.244 5 O -0.277 6.277 6 C 0.406 3.594 7 O -0.441 6.441 8 N -0.365 5.365 9 C 0.057 3.943 10 C 0.316 3.684 11 O -0.412 6.412 12 N -0.352 5.352 13 C -0.022 4.022 14 C 0.224 3.776 15 O -0.462 6.462 16 N -0.213 5.213 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.158 4.158 20 N -0.513 5.513 21 Si 0.704 3.296 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.151 4.151 26 C -0.175 4.175 27 C -0.162 4.162 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.249 0.751 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.207 0.793 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.010 3.747 12.261 22.107 hybrid contribution 0.224 -0.367 -0.712 0.832 sum -17.786 3.380 11.549 21.474 Atomic orbital electron populations 1.22511 0.94137 1.04919 1.02301 1.22084 0.94091 0.91545 0.82100 1.21868 1.02716 0.92393 1.02853 1.22536 1.02425 1.03272 0.96152 1.86294 1.73276 1.22020 1.46149 1.18090 0.79215 0.80672 0.81456 1.90934 1.38431 1.71547 1.43147 1.44714 1.57594 1.07144 1.27066 1.22007 0.98943 0.77607 0.95720 1.19898 0.80189 0.85623 0.82641 1.90685 1.64125 1.21953 1.64407 1.45560 1.28534 1.29703 1.31385 1.21014 0.94936 0.97087 0.89198 1.19618 0.86854 0.87331 0.83808 1.90541 1.68894 1.32293 1.54486 1.42121 1.23435 1.32626 1.23131 1.19433 0.97987 1.16956 1.09440 0.86092 1.25054 0.95784 0.97938 0.97029 1.69614 1.15571 1.40810 1.25284 0.86687 0.79578 0.82200 0.81146 1.19374 1.19932 1.19235 1.23081 0.92874 0.98315 1.00870 1.22834 0.96225 0.98659 0.99785 1.23244 1.00600 0.99412 0.92966 0.92416 0.91219 0.89375 0.91119 0.90143 0.91660 0.89492 0.91152 0.91470 0.75442 0.75138 0.89277 0.89988 0.79270 0.91375 0.89484 0.89178 0.90442 0.88447 0.88097 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.47 37.16 0.31 -1.64 16 2 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 3 C -0.14 -1.34 8.85 37.15 0.33 -1.01 16 4 C -0.19 -2.54 8.33 37.16 0.31 -2.23 16 5 O -0.36 -4.79 9.94 -40.32 -0.40 -5.19 16 6 C 0.65 9.02 7.62 54.05 0.41 9.43 16 7 O -0.55 -8.84 10.93 -19.29 -0.21 -9.05 16 8 N -0.70 -7.94 4.49 -52.70 -0.24 -8.17 16 9 C 0.15 1.74 1.10 -132.06 -0.15 1.59 16 10 C 0.53 8.44 6.40 -10.99 -0.07 8.37 16 11 O -0.54 -9.66 15.22 5.55 0.08 -9.58 16 12 N -0.70 -11.85 5.35 -61.47 -0.33 -12.18 16 13 C 0.11 1.92 6.18 -5.19 -0.03 1.88 16 14 C 0.44 9.82 7.85 -10.99 -0.09 9.73 16 15 O -0.58 -14.72 15.27 5.54 0.08 -14.64 16 16 N -0.58 -13.54 5.09 -10.96 -0.06 -13.59 16 17 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 20 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 21 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 C -0.11 -1.24 6.33 -25.92 -0.16 -1.41 16 26 C -0.14 -1.26 7.67 -25.92 -0.20 -1.46 16 27 C -0.12 -1.07 7.40 -25.83 -0.19 -1.26 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.14 5.81 -51.93 -0.30 0.83 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.39 5.87 -51.93 -0.30 1.08 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.41 3.55 8.81 -40.82 -0.36 3.19 16 38 H 0.41 7.09 6.83 -40.82 -0.28 6.81 16 39 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 42 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.09 1.17 7.84 -51.93 -0.41 0.77 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 1.06 7.33 -51.93 -0.38 0.68 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -33.49 391.41 -6.29 -39.78 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -7.31 Total: 20.49 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 0.13 Total: 16.00 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.15 Total: -58.10 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.44 Total: -38.46 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.49 -6.29 -39.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556511742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.487 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds